Wall clock time and date at job start Tue Mar 31 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99716 * 2 1 4 4 H 1.48499 * 109.47299 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47220 * 120.00079 * 3 2 1 6 6 H 1.48506 * 109.47037 * 239.99893 * 3 2 1 7 7 C 1.38803 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00514 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64839 * 14.64044 * 9 7 2 11 11 C 1.54908 * 104.83157 * 155.83160 * 10 9 7 12 12 C 1.55160 * 101.58117 * 37.00868 * 11 10 9 13 13 C 1.47024 * 125.64802 * 194.33011 * 9 7 2 14 14 H 1.08998 * 109.88044 * 300.51471 * 13 9 7 15 15 C 1.53000 * 109.88260 * 61.68067 * 13 9 7 16 16 H 1.09008 * 109.49568 * 298.05557 * 15 13 9 17 17 C 1.53033 * 109.50034 * 58.12140 * 15 13 9 18 18 C 1.53040 * 109.54142 * 181.28426 * 17 15 13 19 19 C 1.53189 * 109.33706 * 298.68343 * 18 17 15 20 20 N 1.46930 * 108.77419 * 54.61962 * 19 18 17 21 21 C 1.34780 * 120.62703 * 126.41437 * 20 19 18 22 22 O 1.21286 * 119.99597 * 179.97438 * 21 20 19 23 23 C 1.50697 * 120.00161 * 359.97322 * 21 20 19 24 24 N 1.46502 * 109.46924 * 180.02562 * 23 21 20 25 25 N 1.28599 * 124.61825 * 269.69648 * 24 23 21 26 26 C 1.31383 * 108.71962 * 179.83072 * 25 24 23 27 27 C 1.39673 * 105.89584 * 0.41507 * 26 25 24 28 28 N 1.28603 * 124.62166 * 89.99875 * 24 23 21 29 29 C 1.46922 * 118.73927 * 306.38804 * 20 19 18 30 30 H 0.97006 * 120.00501 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.36602 * 274.67076 * 10 9 7 32 32 H 1.08994 * 110.36566 * 36.99441 * 10 9 7 33 33 H 1.09003 * 111.00205 * 155.08289 * 11 10 9 34 34 H 1.08996 * 111.00284 * 278.89464 * 11 10 9 35 35 H 1.09005 * 110.71748 * 82.85841 * 12 11 10 36 36 H 1.09000 * 110.72166 * 205.95252 * 12 11 10 37 37 H 1.09004 * 109.45932 * 301.33861 * 17 15 13 38 38 H 1.09002 * 109.46032 * 61.29468 * 17 15 13 39 39 H 1.08995 * 109.49463 * 178.71820 * 18 17 15 40 40 H 1.08997 * 109.49639 * 58.65428 * 18 17 15 41 41 H 1.08997 * 109.59066 * 294.83270 * 19 18 17 42 42 H 1.09001 * 109.70103 * 174.47429 * 19 18 17 43 43 H 1.09005 * 109.47272 * 299.99857 * 23 21 20 44 44 H 1.08999 * 109.47132 * 60.00273 * 23 21 20 45 45 H 1.08004 * 127.04689 * 180.16304 * 26 25 24 46 46 H 1.08002 * 127.04444 * 179.76760 * 27 26 25 47 47 H 1.09000 * 109.58552 * 293.82058 * 29 20 19 48 48 H 1.09004 * 109.58601 * 173.39778 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1079 -2.5528 -0.3005 11 6 -0.2473 -4.0215 -0.7729 12 6 0.7650 -4.7444 0.1545 13 6 1.8998 -3.7086 0.2980 14 1 2.6995 -3.9320 -0.4081 15 6 2.4431 -3.7308 1.7281 16 1 3.2405 -2.9939 1.8257 17 6 1.3161 -3.3967 2.7079 18 6 1.8656 -3.3871 4.1362 19 6 2.4096 -4.7774 4.4798 20 7 3.3912 -5.1668 3.4581 21 6 4.6324 -5.5556 3.8113 22 8 5.4334 -5.8751 2.9585 23 6 5.0249 -5.5933 5.2658 24 7 6.4134 -6.0451 5.3853 25 7 6.7737 -7.2728 5.5140 26 6 8.0844 -7.3219 5.5899 27 6 8.5223 -5.9982 5.5060 28 7 7.4377 -5.2674 5.3813 29 6 2.9937 -5.1249 2.0443 30 1 -0.4851 0.8401 -0.0004 31 1 -0.7062 -2.3838 0.5949 32 1 -0.4094 -1.8689 -1.0939 33 1 -1.2599 -4.3902 -0.6087 34 1 0.0386 -4.1240 -1.8196 35 1 0.3133 -4.9634 1.1221 36 1 1.1326 -5.6576 -0.3134 37 1 0.9065 -2.4151 2.4693 38 1 0.5300 -4.1474 2.6269 39 1 1.0675 -3.1268 4.8313 40 1 2.6681 -2.6534 4.2124 41 1 1.5911 -5.4970 4.4932 42 1 2.8904 -4.7525 5.4577 43 1 4.9298 -4.5953 5.6938 44 1 4.3711 -6.2820 5.8008 45 1 8.6973 -8.2044 5.6993 46 1 9.5433 -5.6474 5.5370 47 1 2.2228 -5.8729 1.8591 48 1 3.8605 -5.3269 1.4149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963306982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:26 Heat of formation + Delta-G solvation = 107.969820 kcal Electronic energy + Delta-G solvation = -29767.561873 eV Core-core repulsion = 25861.227386 eV Total energy + Delta-G solvation = -3906.334487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.65821 -40.34530 -38.44505 -36.52810 -34.03178 -32.93053 -32.52261 -32.33346 -31.34297 -29.40927 -28.70987 -26.65685 -25.16725 -24.55061 -23.00899 -22.76721 -22.15739 -21.24487 -20.24059 -19.34565 -18.40873 -17.93267 -17.44867 -16.68272 -16.09349 -15.84607 -15.51232 -15.11925 -14.92587 -14.62779 -14.39742 -14.24099 -14.06499 -13.83272 -13.43703 -13.19909 -12.90223 -12.49974 -12.20658 -12.12156 -11.89203 -11.76104 -11.59361 -11.17072 -10.92018 -10.91219 -10.84841 -10.77927 -10.49380 -10.43051 -10.30876 -10.28241 -10.12426 -9.94442 -9.74505 -9.67425 -9.47999 -9.35764 -8.61581 -8.57510 -6.77867 -5.75586 -3.10266 1.60533 2.00128 2.35065 2.39125 2.93167 3.38753 3.43789 3.44767 3.99414 4.08887 4.47825 4.55004 4.64659 4.73774 4.92040 5.03367 5.12664 5.18961 5.20907 5.34089 5.41671 5.50309 5.66950 5.70025 5.73465 5.75971 5.85365 5.89148 5.91055 6.01970 6.04444 6.10007 6.23651 6.32106 6.39879 6.46982 6.50906 6.58281 6.64336 6.74291 6.96474 6.99561 7.12791 7.24845 7.54301 7.62089 7.80120 7.93794 8.20314 8.28191 9.20202 9.81099 10.50069 11.36268 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.003100 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.879418 B = 9029.605623 C = 9925.345161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.072 0.928 9 N -0.590 5.590 10 C 0.175 3.825 11 C -0.150 4.150 12 C -0.130 4.130 13 C 0.168 3.832 14 H 0.033 0.967 15 C -0.104 4.104 16 H 0.071 0.929 17 C -0.106 4.106 18 C -0.135 4.135 19 C 0.103 3.897 20 N -0.599 5.599 21 C 0.502 3.498 22 O -0.525 6.525 23 C 0.123 3.877 24 N -0.143 5.143 25 N -0.283 5.283 26 C -0.027 4.027 27 C -0.026 4.026 28 N -0.279 5.279 29 C 0.117 3.883 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.197 0.803 46 H 0.198 0.802 47 H 0.069 0.931 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 -13.521 12.951 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.089 0.911 9 N -0.314 5.314 10 C 0.050 3.950 11 C -0.189 4.189 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.051 0.949 15 C -0.126 4.126 16 H 0.089 0.911 17 C -0.143 4.143 18 C -0.174 4.174 19 C -0.019 4.019 20 N -0.333 5.333 21 C 0.286 3.714 22 O -0.401 6.401 23 C -0.001 4.001 24 N -0.043 5.043 25 N -0.124 5.124 26 C -0.210 4.210 27 C -0.209 4.209 28 N -0.120 5.120 29 C -0.005 4.005 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.214 0.786 46 H 0.214 0.786 47 H 0.087 0.913 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.952 -13.005 12.364 18.616 hybrid contribution 1.394 0.695 0.150 1.565 sum 6.346 -12.310 12.515 18.666 Atomic orbital electron populations 1.69922 1.04866 1.25167 1.56465 1.24833 0.95600 0.97557 1.01925 0.86300 0.78594 0.83483 0.77994 1.21655 1.21178 1.21191 1.18894 0.90238 0.82317 1.43890 0.91058 1.44450 1.06011 1.01010 1.79881 1.21402 0.85093 0.89934 0.98582 1.23015 0.97425 0.99821 0.98611 1.22689 0.97260 0.97184 0.99647 1.20866 0.94011 0.87319 0.91851 0.94933 1.21968 0.98288 0.94313 0.98016 0.91066 1.21490 0.97163 1.03984 0.91655 1.21953 1.01028 0.95237 0.99134 1.21897 0.92122 0.97819 0.90084 1.48124 1.11226 1.65122 1.08832 1.20340 0.82486 0.78370 0.90176 1.90776 1.49940 1.47978 1.51427 1.21781 0.76437 1.04522 0.97361 1.47358 1.06860 1.00713 1.49400 1.74023 1.16094 1.04274 1.17967 1.24770 0.90309 0.99434 1.06443 1.24789 0.98706 0.91262 1.06187 1.74077 0.94693 1.25366 1.17822 1.21884 1.00414 0.98647 0.79585 0.93723 0.95720 0.91376 0.92589 0.92515 0.91470 0.92633 0.89084 0.92601 0.90907 0.91531 0.90741 0.90648 0.84574 0.84685 0.78568 0.78553 0.91273 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.84 10.57 55.49 0.59 -25.25 16 2 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -5.98 9.85 -15.06 -0.15 -6.13 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.59 -13.98 2.29 -162.58 -0.37 -14.35 16 10 C 0.17 4.00 5.41 -2.53 -0.01 3.99 16 11 C -0.15 -2.71 7.08 -24.58 -0.17 -2.88 16 12 C -0.13 -2.13 5.08 -24.90 -0.13 -2.25 16 13 C 0.17 3.25 2.96 -66.96 -0.20 3.05 16 14 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.10 -1.79 2.10 -90.50 -0.19 -1.98 16 16 H 0.07 1.44 8.04 -51.92 -0.42 1.02 16 17 C -0.11 -1.69 4.74 -26.69 -0.13 -1.81 16 18 C -0.14 -1.65 6.08 -26.61 -0.16 -1.81 16 19 C 0.10 0.99 6.34 -3.71 -0.02 0.97 16 20 N -0.60 -7.71 2.97 -172.77 -0.51 -8.22 16 21 C 0.50 7.08 7.77 -10.99 -0.09 7.00 16 22 O -0.53 -9.87 15.84 5.55 0.09 -9.78 16 23 C 0.12 1.29 5.36 -5.19 -0.03 1.26 16 24 N -0.14 -1.91 3.44 -11.66 -0.04 -1.95 16 25 N -0.28 -3.73 12.05 30.68 0.37 -3.36 16 26 C -0.03 -0.28 12.20 -17.21 -0.21 -0.49 16 27 C -0.03 -0.28 12.19 -17.21 -0.21 -0.49 16 28 N -0.28 -3.85 12.05 30.67 0.37 -3.48 16 29 C 0.12 1.73 5.57 -3.71 -0.02 1.71 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 32 H 0.07 1.78 6.93 -51.93 -0.36 1.42 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.02 5.53 -51.93 -0.29 0.73 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.88 7.53 -51.93 -0.39 1.48 16 38 H 0.06 0.83 6.11 -51.93 -0.32 0.51 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 43 H 0.14 1.10 7.70 -51.93 -0.40 0.70 16 44 H 0.14 0.96 7.94 -51.93 -0.41 0.55 16 45 H 0.20 1.22 8.06 -52.48 -0.42 0.80 16 46 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.07 0.93 6.93 -51.93 -0.36 0.57 16 48 H 0.09 1.46 7.01 -51.93 -0.36 1.10 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -34.43 375.25 -8.08 -42.51 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.39 Total: 1.52 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.81 Total: -0.03 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.40 Total: -56.61 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.43 -8.08 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963306982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.475 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds