Wall clock time and date at job start Tue Mar 31 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99716 * 2 1 4 4 H 1.48499 * 109.47299 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47220 * 120.00079 * 3 2 1 6 6 H 1.48506 * 109.47037 * 239.99893 * 3 2 1 7 7 C 1.38803 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00514 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64839 * 14.64044 * 9 7 2 11 11 C 1.54908 * 104.83157 * 155.83160 * 10 9 7 12 12 C 1.55160 * 101.58117 * 37.00868 * 11 10 9 13 13 C 1.47024 * 125.64802 * 194.33011 * 9 7 2 14 14 H 1.08998 * 109.88044 * 300.51471 * 13 9 7 15 15 C 1.53000 * 109.88260 * 61.68067 * 13 9 7 16 16 H 1.09008 * 109.49568 * 298.05557 * 15 13 9 17 17 C 1.53033 * 109.50034 * 58.12140 * 15 13 9 18 18 C 1.53040 * 109.54142 * 181.28426 * 17 15 13 19 19 C 1.53189 * 109.33706 * 298.68343 * 18 17 15 20 20 N 1.46930 * 108.77419 * 54.61962 * 19 18 17 21 21 C 1.34780 * 120.62703 * 126.41437 * 20 19 18 22 22 O 1.21286 * 119.99597 * 179.97438 * 21 20 19 23 23 C 1.50697 * 120.00161 * 359.97322 * 21 20 19 24 24 N 1.46502 * 109.46924 * 180.02562 * 23 21 20 25 25 N 1.28599 * 124.61825 * 269.69648 * 24 23 21 26 26 C 1.31383 * 108.71962 * 179.83072 * 25 24 23 27 27 C 1.39673 * 105.89584 * 0.41507 * 26 25 24 28 28 N 1.28603 * 124.62166 * 89.99875 * 24 23 21 29 29 C 1.46922 * 118.73927 * 306.38804 * 20 19 18 30 30 H 0.97006 * 120.00501 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.36602 * 274.67076 * 10 9 7 32 32 H 1.08994 * 110.36566 * 36.99441 * 10 9 7 33 33 H 1.09003 * 111.00205 * 155.08289 * 11 10 9 34 34 H 1.08996 * 111.00284 * 278.89464 * 11 10 9 35 35 H 1.09005 * 110.71748 * 82.85841 * 12 11 10 36 36 H 1.09000 * 110.72166 * 205.95252 * 12 11 10 37 37 H 1.09004 * 109.45932 * 301.33861 * 17 15 13 38 38 H 1.09002 * 109.46032 * 61.29468 * 17 15 13 39 39 H 1.08995 * 109.49463 * 178.71820 * 18 17 15 40 40 H 1.08997 * 109.49639 * 58.65428 * 18 17 15 41 41 H 1.08997 * 109.59066 * 294.83270 * 19 18 17 42 42 H 1.09001 * 109.70103 * 174.47429 * 19 18 17 43 43 H 1.09005 * 109.47272 * 299.99857 * 23 21 20 44 44 H 1.08999 * 109.47132 * 60.00273 * 23 21 20 45 45 H 1.08004 * 127.04689 * 180.16304 * 26 25 24 46 46 H 1.08002 * 127.04444 * 179.76760 * 27 26 25 47 47 H 1.09000 * 109.58552 * 293.82058 * 29 20 19 48 48 H 1.09004 * 109.58601 * 173.39778 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1079 -2.5528 -0.3005 11 6 -0.2473 -4.0215 -0.7729 12 6 0.7650 -4.7444 0.1545 13 6 1.8998 -3.7086 0.2980 14 1 2.6995 -3.9320 -0.4081 15 6 2.4431 -3.7308 1.7281 16 1 3.2405 -2.9939 1.8257 17 6 1.3161 -3.3967 2.7079 18 6 1.8656 -3.3871 4.1362 19 6 2.4096 -4.7774 4.4798 20 7 3.3912 -5.1668 3.4581 21 6 4.6324 -5.5556 3.8113 22 8 5.4334 -5.8751 2.9585 23 6 5.0249 -5.5933 5.2658 24 7 6.4134 -6.0451 5.3853 25 7 6.7737 -7.2728 5.5140 26 6 8.0844 -7.3219 5.5899 27 6 8.5223 -5.9982 5.5060 28 7 7.4377 -5.2674 5.3813 29 6 2.9937 -5.1249 2.0443 30 1 -0.4851 0.8401 -0.0004 31 1 -0.7062 -2.3838 0.5949 32 1 -0.4094 -1.8689 -1.0939 33 1 -1.2599 -4.3902 -0.6087 34 1 0.0386 -4.1240 -1.8196 35 1 0.3133 -4.9634 1.1221 36 1 1.1326 -5.6576 -0.3134 37 1 0.9065 -2.4151 2.4693 38 1 0.5300 -4.1474 2.6269 39 1 1.0675 -3.1268 4.8313 40 1 2.6681 -2.6534 4.2124 41 1 1.5911 -5.4970 4.4932 42 1 2.8904 -4.7525 5.4577 43 1 4.9298 -4.5953 5.6938 44 1 4.3711 -6.2820 5.8008 45 1 8.6973 -8.2044 5.6993 46 1 9.5433 -5.6474 5.5370 47 1 2.2228 -5.8729 1.8591 48 1 3.8605 -5.3269 1.4149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963306982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:25 Heat of formation + Delta-G solvation = 84.911250 kcal Electronic energy + Delta-G solvation = -29768.561768 eV Core-core repulsion = 25861.227386 eV Total energy + Delta-G solvation = -3907.334382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.48373 -41.47992 -39.88240 -37.84817 -35.01728 -34.58797 -33.72683 -33.38536 -32.54408 -31.23304 -29.70256 -28.05386 -26.48662 -26.24204 -24.02884 -23.81234 -23.15335 -22.46477 -21.88099 -20.58808 -19.76233 -18.90872 -18.57941 -18.31904 -17.14669 -16.94335 -16.79580 -16.39835 -16.29255 -15.79393 -15.69177 -15.54966 -15.24567 -15.11413 -14.61537 -14.22348 -14.20519 -13.84265 -13.64538 -13.43808 -13.31676 -13.17138 -12.89622 -12.74746 -12.56869 -12.47184 -12.06958 -11.96346 -11.84870 -11.79474 -11.76119 -11.64286 -11.48007 -11.35853 -11.33039 -11.15809 -10.94383 -10.64092 -10.24244 -9.72938 -8.75351 -7.85624 -5.19878 0.73192 1.23539 1.32927 1.42021 1.42864 1.49440 1.62486 1.96565 2.47880 3.19843 3.29225 3.32542 3.64039 3.78594 3.87805 3.94171 3.99441 4.07184 4.11481 4.15944 4.26366 4.28436 4.33086 4.42928 4.49221 4.58361 4.59192 4.74354 4.79234 4.83888 4.85891 4.91276 5.06914 5.08492 5.19833 5.22187 5.31823 5.35171 5.38705 5.48227 5.51057 5.59464 5.67159 5.68508 5.72078 5.83197 6.23703 6.27322 6.90236 7.13981 7.36892 7.82247 8.49184 9.24701 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.003100 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.879418 B = 9029.605623 C = 9925.345161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.053 4.053 3 Si 0.962 3.038 4 H -0.291 1.291 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.230 4.230 8 H 0.061 0.939 9 N -0.606 5.606 10 C 0.180 3.820 11 C -0.138 4.138 12 C -0.115 4.115 13 C 0.157 3.843 14 H 0.015 0.985 15 C -0.091 4.091 16 H 0.028 0.972 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.104 3.896 20 N -0.598 5.598 21 C 0.498 3.502 22 O -0.582 6.582 23 C 0.123 3.877 24 N -0.159 5.159 25 N -0.309 5.309 26 C -0.024 4.024 27 C -0.027 4.027 28 N -0.318 5.318 29 C 0.128 3.872 30 H 0.247 0.753 31 H 0.003 0.997 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.118 0.882 43 H 0.160 0.840 44 H 0.174 0.826 45 H 0.234 0.766 46 H 0.230 0.770 47 H 0.095 0.905 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -16.050 15.341 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.360 4.360 8 H 0.079 0.921 9 N -0.330 5.330 10 C 0.056 3.944 11 C -0.176 4.176 12 C -0.153 4.153 13 C 0.050 3.950 14 H 0.033 0.967 15 C -0.113 4.113 16 H 0.046 0.954 17 C -0.135 4.135 18 C -0.169 4.169 19 C -0.017 4.017 20 N -0.330 5.330 21 C 0.284 3.716 22 O -0.462 6.462 23 C 0.000 4.000 24 N -0.058 5.058 25 N -0.150 5.150 26 C -0.207 4.207 27 C -0.210 4.210 28 N -0.158 5.158 29 C 0.005 3.995 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.136 0.864 43 H 0.178 0.822 44 H 0.191 0.809 45 H 0.250 0.750 46 H 0.246 0.754 47 H 0.113 0.887 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.081 -15.549 14.782 22.047 hybrid contribution 1.431 1.473 -0.637 2.150 sum 6.512 -14.075 14.145 20.991 Atomic orbital electron populations 1.70104 1.05847 1.25143 1.57800 1.25467 0.96386 1.00195 1.02608 0.85413 0.77440 0.80144 0.77904 1.21671 1.20799 1.21002 1.19055 0.90074 0.83970 1.42872 0.92110 1.44619 1.06455 1.01739 1.80169 1.21186 0.84361 0.92558 0.96341 1.22895 0.99713 0.96172 0.98834 1.22662 0.95200 0.96829 1.00572 1.21076 0.94866 0.86295 0.92762 0.96718 1.21702 0.97460 0.95015 0.97103 0.95372 1.21346 0.96934 1.01364 0.93852 1.21911 1.01142 0.96958 0.96918 1.22194 0.92521 0.96237 0.90763 1.48195 1.11751 1.64486 1.08532 1.21041 0.81887 0.77110 0.91514 1.90746 1.51498 1.50566 1.53350 1.22058 0.76354 1.06972 0.94642 1.47589 1.07408 1.00657 1.50183 1.73981 1.17524 1.04564 1.18903 1.25470 0.89853 1.00630 1.04745 1.25457 0.99537 0.91389 1.04598 1.74037 0.95855 1.26716 1.19214 1.21587 0.99858 0.97033 0.81040 0.94409 0.97872 0.95488 0.89641 0.92505 0.89428 0.89634 0.94447 0.90702 0.88485 0.93505 0.87803 0.86436 0.82250 0.80876 0.75004 0.75394 0.88731 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.48 10.57 21.65 0.23 -55.25 16 2 C -0.05 -2.98 5.47 84.86 0.46 -2.52 16 3 Si 0.96 46.42 29.55 68.60 2.03 48.45 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.23 -12.90 9.85 84.03 0.83 -12.07 16 8 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 9 N -0.61 -30.04 2.29 -668.29 -1.53 -31.56 16 10 C 0.18 8.56 5.41 86.86 0.47 9.03 16 11 C -0.14 -4.80 7.08 31.99 0.23 -4.58 16 12 C -0.12 -3.52 5.08 31.78 0.16 -3.36 16 13 C 0.16 6.21 2.96 45.33 0.13 6.34 16 14 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 15 C -0.09 -3.20 2.10 -10.72 -0.02 -3.23 16 16 H 0.03 1.20 8.04 -2.38 -0.02 1.18 16 17 C -0.10 -3.07 4.74 30.62 0.15 -2.93 16 18 C -0.13 -2.94 6.08 30.67 0.19 -2.76 16 19 C 0.10 1.57 6.34 86.36 0.55 2.11 16 20 N -0.60 -14.12 2.97 -818.90 -2.43 -16.55 16 21 C 0.50 13.36 7.77 87.66 0.68 14.04 16 22 O -0.58 -22.01 15.84 -3.05 -0.05 -22.06 16 23 C 0.12 2.24 5.36 85.63 0.46 2.70 16 24 N -0.16 -3.95 3.44 -190.80 -0.66 -4.61 16 25 N -0.31 -7.56 12.05 -56.86 -0.69 -8.25 16 26 C -0.02 -0.45 12.20 85.11 1.04 0.59 16 27 C -0.03 -0.53 12.19 85.11 1.04 0.51 16 28 N -0.32 -8.38 12.05 -56.87 -0.69 -9.07 16 29 C 0.13 3.67 5.57 86.36 0.48 4.15 16 30 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 31 H 0.00 0.17 8.06 -2.38 -0.02 0.15 16 32 H 0.03 1.47 6.93 -2.39 -0.02 1.46 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.09 2.34 5.53 -2.38 -0.01 2.33 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.59 7.53 -2.39 -0.02 1.57 16 38 H 0.07 2.05 6.11 -2.39 -0.01 2.03 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.12 0.86 5.93 -2.39 -0.01 0.85 16 43 H 0.16 2.07 7.70 -2.38 -0.02 2.05 16 44 H 0.17 1.70 7.94 -2.39 -0.02 1.69 16 45 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 46 H 0.23 2.50 8.06 -2.91 -0.02 2.48 16 47 H 0.09 2.25 6.93 -2.39 -0.02 2.24 16 48 H 0.06 2.10 7.01 -2.38 -0.02 2.09 16 Total: -1.00 -83.07 375.25 4.02 -79.06 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.96 Total: 11.81 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.84 Total: 8.04 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -5.76 Total: -125.29 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -83.07 4.02 -79.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963306982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.970 kcal (2) G-P(sol) polarization free energy of solvation -83.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds