Wall clock time and date at job start Tue Mar 31 2020 18:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47166 * 269.99889 * 3 2 1 5 5 H 1.48501 * 109.47423 * 30.00270 * 3 2 1 6 6 H 1.48508 * 109.46891 * 150.00071 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12 16 16 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 17 17 N 1.46496 * 109.47414 * 180.02562 * 15 14 13 18 18 C 1.34772 * 120.00151 * 84.99440 * 17 15 14 19 19 O 1.21599 * 120.00311 * 0.02562 * 18 17 15 20 20 C 1.47526 * 120.00160 * 179.97438 * 18 17 15 21 21 C 1.36596 * 125.77190 * 180.02562 * 20 18 17 22 22 N 1.34814 * 106.83874 * 179.97438 * 21 20 18 23 23 C 1.46502 * 126.59497 * 179.97438 * 22 21 20 24 24 C 1.53783 * 113.61475 * 14.13416 * 23 22 21 25 25 C 1.53953 * 87.02203 * 220.04980 * 24 23 22 26 26 C 1.53778 * 87.11103 * 25.36435 * 25 24 23 27 27 N 1.40208 * 106.81064 * 0.02562 * 22 21 20 28 28 N 1.28763 * 108.36752 * 359.74625 * 27 22 21 29 29 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 30 30 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 33 33 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 34 34 H 1.08993 * 109.47662 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47075 * 300.00932 * 13 12 10 36 36 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 37 37 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 38 38 H 0.96994 * 120.00122 * 265.00254 * 17 15 14 39 39 H 1.07998 * 126.58029 * 0.02562 * 21 20 18 40 40 H 1.08999 * 112.85093 * 145.33354 * 23 22 21 41 41 H 1.09005 * 113.61389 * 334.57279 * 24 23 22 42 42 H 1.09001 * 113.61523 * 105.46760 * 24 23 22 43 43 H 1.08993 * 113.53518 * 270.81037 * 25 24 23 44 44 H 1.08995 * 113.74319 * 139.94406 * 25 24 23 45 45 H 1.08997 * 113.61600 * 220.09070 * 26 25 24 46 46 H 1.09003 * 113.69233 * 89.19907 * 26 25 24 47 47 H 1.08996 * 109.47853 * 300.00060 * 29 10 9 48 48 H 1.09002 * 109.47153 * 60.00089 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5889 12 6 2.4218 -4.0356 -1.4376 13 6 3.1874 -5.3603 -1.4376 14 6 2.3107 -6.4559 -0.8277 15 6 1.9468 -6.0771 0.6093 16 1 2.8575 -5.9704 1.1987 17 7 1.1078 -7.1265 1.1935 18 6 1.6784 -8.2080 1.7600 19 8 2.8896 -8.3128 1.7868 20 6 0.8336 -9.2645 2.3488 21 6 1.2846 -10.4048 2.9505 22 7 0.1959 -11.0933 3.3482 23 6 0.1838 -12.3838 4.0417 24 6 1.5524 -12.7881 4.6146 25 6 1.2326 -14.2214 4.1524 26 6 0.3074 -13.5916 3.0978 27 7 -0.9226 -10.3375 2.9694 28 7 -0.5098 -9.2652 2.3882 29 6 1.1808 -4.7521 0.6091 30 1 -0.4849 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 1.5112 -4.1419 -2.0270 33 1 3.0468 -3.2553 -1.8718 34 1 3.4470 -5.6300 -2.4612 35 1 4.0981 -5.2537 -0.8481 36 1 1.4000 -6.5626 -1.4170 37 1 2.8562 -7.3996 -0.8273 38 1 0.1417 -7.0429 1.1724 39 1 2.3155 -10.6982 3.0830 40 1 -0.6328 -12.4715 4.7584 41 1 2.3955 -12.3381 4.0902 42 1 1.6210 -12.6825 5.6973 43 1 0.7038 -14.8120 4.9003 44 1 2.0874 -14.7459 3.7258 45 1 -0.6278 -14.1337 2.9578 46 1 0.8081 -13.3613 2.1573 47 1 0.9215 -4.4823 1.6328 48 1 0.2701 -4.8583 0.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981093949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:23 Heat of formation + Delta-G solvation = 78.872113 kcal Electronic energy + Delta-G solvation = -27975.859207 eV Core-core repulsion = 24068.262948 eV Total energy + Delta-G solvation = -3907.596258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56200 -39.84739 -39.30043 -37.80328 -34.65786 -33.61938 -33.12158 -31.29626 -31.04808 -29.23648 -27.74230 -26.61656 -26.50662 -24.09338 -23.56824 -22.72506 -21.90787 -21.24792 -20.32004 -20.14409 -19.51117 -18.50052 -17.10529 -16.60170 -16.55670 -16.17084 -15.97053 -15.11139 -14.89718 -14.66717 -14.34857 -14.06671 -13.81309 -13.61425 -13.46204 -13.34689 -13.21409 -13.08601 -12.66981 -12.58234 -12.32617 -12.08841 -12.01631 -11.58068 -11.48312 -11.20117 -10.95683 -10.88560 -10.83686 -10.66423 -10.57241 -10.34038 -10.29117 -10.14327 -10.09969 -9.69499 -9.58139 -9.52688 -8.91322 -8.81051 -6.91344 -5.72381 -3.00808 0.84871 1.54252 1.66676 3.11705 3.23629 3.44772 3.46813 3.52016 3.53539 3.64092 3.93994 3.96221 3.98632 4.40956 4.54694 4.62070 4.72943 4.81221 4.87247 4.99636 5.04488 5.10061 5.14666 5.16766 5.21015 5.38480 5.45739 5.55515 5.58643 5.67508 5.75090 5.81305 5.94205 6.03256 6.06078 6.08981 6.19747 6.36665 6.39474 6.57705 6.59918 6.68605 6.78929 7.02350 7.18247 7.47351 7.74830 7.76465 8.19063 8.46363 9.57409 10.15405 10.50190 11.50351 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.001949 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.931660 B =14366.029476 C =14805.303840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.090 0.910 17 N -0.706 5.706 18 C 0.604 3.396 19 O -0.542 6.542 20 C -0.099 4.099 21 C 0.091 3.909 22 N -0.351 5.351 23 C 0.121 3.879 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.145 4.145 27 N -0.066 5.066 28 N -0.204 5.204 29 C -0.130 4.130 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.202 0.798 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -31.612 7.601 32.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.108 0.892 17 N -0.355 5.355 18 C 0.387 3.613 19 O -0.419 6.419 20 C -0.238 4.238 21 C -0.066 4.066 22 N -0.136 5.136 23 C 0.020 3.980 24 C -0.186 4.186 25 C -0.173 4.173 26 C -0.184 4.184 27 N -0.045 5.045 28 N -0.077 5.077 29 C -0.169 4.169 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.243 0.757 39 H 0.218 0.782 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.627 -31.441 7.663 32.402 hybrid contribution 0.588 0.802 0.016 0.994 sum 2.214 -30.639 7.679 31.664 Atomic orbital electron populations 1.69665 1.05077 1.25567 1.57884 1.24739 0.95514 0.97652 1.03184 0.86204 0.78659 0.83955 0.77470 1.21789 1.21853 1.20781 1.19248 0.91016 0.84086 1.42375 0.91146 1.42404 1.05777 0.99694 1.88575 1.20097 0.94091 0.85529 0.92959 0.93342 1.22294 0.99732 0.95223 1.00495 1.21481 0.98496 0.95367 0.99914 1.21892 1.00197 0.98820 0.95378 1.21100 0.94418 0.85948 0.94008 0.89244 1.45964 1.11208 1.20360 1.57977 1.16747 0.86309 0.80697 0.77512 1.90802 1.13143 1.78364 1.59561 1.21555 0.90544 0.99552 1.12154 1.23224 0.95105 0.92166 0.96084 1.50578 1.05532 1.17539 1.39941 1.23456 1.01541 0.77362 0.95681 1.23516 0.95332 0.96945 1.02813 1.22741 1.00352 0.95626 0.98614 1.23450 1.01681 0.94921 0.98346 1.82002 1.06883 0.99237 1.16385 1.74659 1.10041 1.12557 1.10489 1.22107 0.99407 0.93193 1.02190 0.93581 0.78297 0.92626 0.91915 0.92522 0.92157 0.91949 0.92147 0.75743 0.78153 0.84784 0.88498 0.89226 0.88966 0.89682 0.89569 0.88954 0.91202 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.72 -18.13 5.12 -53.43 -0.27 -18.41 16 10 C 0.18 3.64 2.77 -67.93 -0.19 3.45 16 11 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 12 C -0.14 -2.45 5.50 -26.73 -0.15 -2.60 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.12 -1.74 5.49 -26.73 -0.15 -1.89 16 15 C 0.15 2.20 2.46 -67.90 -0.17 2.03 16 16 H 0.09 1.43 7.57 -51.93 -0.39 1.04 16 17 N -0.71 -9.58 5.07 -54.82 -0.28 -9.86 16 18 C 0.60 8.47 7.78 -12.48 -0.10 8.37 16 19 O -0.54 -8.74 16.53 5.28 0.09 -8.65 16 20 C -0.10 -1.21 6.99 -83.55 -0.58 -1.80 16 21 C 0.09 0.84 10.49 -16.83 -0.18 0.66 16 22 N -0.35 -3.00 3.83 -53.77 -0.21 -3.21 16 23 C 0.12 0.56 5.05 -67.11 -0.34 0.22 16 24 C -0.15 -0.39 7.47 -25.83 -0.19 -0.58 16 25 C -0.14 -0.24 8.09 -25.83 -0.21 -0.45 16 26 C -0.15 -0.50 7.88 -25.92 -0.20 -0.71 16 27 N -0.07 -0.78 13.78 60.35 0.83 0.05 16 28 N -0.20 -2.68 12.04 32.85 0.40 -2.28 16 29 C -0.13 -2.16 4.86 -26.71 -0.13 -2.29 16 30 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.41 5.14 8.29 -40.82 -0.34 4.80 16 39 H 0.20 1.27 6.78 -52.49 -0.36 0.91 16 40 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.25 6.39 -51.93 -0.33 -0.08 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 391.52 15.07 5.90 5.90 Total: -1.00 -33.72 391.52 -8.45 -42.17 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.62 Total: 9.00 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.99 Total: -4.65 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 1.19 Total: -61.36 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.72 -8.45 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981093949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.039 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds