Wall clock time and date at job start Tue Mar 31 2020 18:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47166 * 269.99889 * 3 2 1 5 5 H 1.48501 * 109.47423 * 30.00270 * 3 2 1 6 6 H 1.48508 * 109.46891 * 150.00071 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12 16 16 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 17 17 N 1.46496 * 109.47414 * 180.02562 * 15 14 13 18 18 C 1.34772 * 120.00151 * 84.99440 * 17 15 14 19 19 O 1.21599 * 120.00311 * 0.02562 * 18 17 15 20 20 C 1.47526 * 120.00160 * 179.97438 * 18 17 15 21 21 C 1.36596 * 125.77190 * 180.02562 * 20 18 17 22 22 N 1.34814 * 106.83874 * 179.97438 * 21 20 18 23 23 C 1.46502 * 126.59497 * 179.97438 * 22 21 20 24 24 C 1.53783 * 113.61475 * 14.13416 * 23 22 21 25 25 C 1.53953 * 87.02203 * 220.04980 * 24 23 22 26 26 C 1.53778 * 87.11103 * 25.36435 * 25 24 23 27 27 N 1.40208 * 106.81064 * 0.02562 * 22 21 20 28 28 N 1.28763 * 108.36752 * 359.74625 * 27 22 21 29 29 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 30 30 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 33 33 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 34 34 H 1.08993 * 109.47662 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47075 * 300.00932 * 13 12 10 36 36 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 37 37 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 38 38 H 0.96994 * 120.00122 * 265.00254 * 17 15 14 39 39 H 1.07998 * 126.58029 * 0.02562 * 21 20 18 40 40 H 1.08999 * 112.85093 * 145.33354 * 23 22 21 41 41 H 1.09005 * 113.61389 * 334.57279 * 24 23 22 42 42 H 1.09001 * 113.61523 * 105.46760 * 24 23 22 43 43 H 1.08993 * 113.53518 * 270.81037 * 25 24 23 44 44 H 1.08995 * 113.74319 * 139.94406 * 25 24 23 45 45 H 1.08997 * 113.61600 * 220.09070 * 26 25 24 46 46 H 1.09003 * 113.69233 * 89.19907 * 26 25 24 47 47 H 1.08996 * 109.47853 * 300.00060 * 29 10 9 48 48 H 1.09002 * 109.47153 * 60.00089 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5889 12 6 2.4218 -4.0356 -1.4376 13 6 3.1874 -5.3603 -1.4376 14 6 2.3107 -6.4559 -0.8277 15 6 1.9468 -6.0771 0.6093 16 1 2.8575 -5.9704 1.1987 17 7 1.1078 -7.1265 1.1935 18 6 1.6784 -8.2080 1.7600 19 8 2.8896 -8.3128 1.7868 20 6 0.8336 -9.2645 2.3488 21 6 1.2846 -10.4048 2.9505 22 7 0.1959 -11.0933 3.3482 23 6 0.1838 -12.3838 4.0417 24 6 1.5524 -12.7881 4.6146 25 6 1.2326 -14.2214 4.1524 26 6 0.3074 -13.5916 3.0978 27 7 -0.9226 -10.3375 2.9694 28 7 -0.5098 -9.2652 2.3882 29 6 1.1808 -4.7521 0.6091 30 1 -0.4849 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 1.5112 -4.1419 -2.0270 33 1 3.0468 -3.2553 -1.8718 34 1 3.4470 -5.6300 -2.4612 35 1 4.0981 -5.2537 -0.8481 36 1 1.4000 -6.5626 -1.4170 37 1 2.8562 -7.3996 -0.8273 38 1 0.1417 -7.0429 1.1724 39 1 2.3155 -10.6982 3.0830 40 1 -0.6328 -12.4715 4.7584 41 1 2.3955 -12.3381 4.0902 42 1 1.6210 -12.6825 5.6973 43 1 0.7038 -14.8120 4.9003 44 1 2.0874 -14.7459 3.7258 45 1 -0.6278 -14.1337 2.9578 46 1 0.8081 -13.3613 2.1573 47 1 0.9215 -4.4823 1.6328 48 1 0.2701 -4.8583 0.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981093949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:22 Heat of formation + Delta-G solvation = 55.958725 kcal Electronic energy + Delta-G solvation = -27976.852806 eV Core-core repulsion = 24068.262948 eV Total energy + Delta-G solvation = -3908.589857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.34576 -40.93155 -39.75911 -39.13704 -36.24071 -34.89581 -34.09143 -32.93130 -32.15170 -30.55970 -29.36985 -27.06276 -26.81994 -25.71304 -24.92408 -23.37525 -23.17694 -22.52223 -21.41275 -20.88398 -20.52344 -19.49830 -18.92028 -17.55412 -17.39375 -17.16729 -16.53002 -16.44985 -16.02195 -15.75108 -15.70129 -15.41310 -15.12878 -14.97277 -14.78635 -14.22809 -14.13906 -13.78481 -13.56232 -13.49464 -13.39561 -13.25226 -12.91723 -12.90073 -12.79290 -12.25811 -12.15119 -12.05364 -12.01869 -11.95804 -11.85375 -11.63305 -11.57378 -11.49723 -11.37123 -11.14302 -11.03536 -10.85255 -10.42183 -10.02223 -8.98307 -7.92006 -5.20034 0.10300 0.58225 1.04904 1.48114 1.49580 1.57914 2.06780 2.21058 2.58110 3.06093 3.15992 3.37669 3.41155 3.59511 3.65888 3.74536 3.75595 3.87405 3.88839 4.06499 4.15017 4.26945 4.33342 4.41345 4.47681 4.54139 4.59457 4.60384 4.66306 4.70053 4.76601 4.78323 4.90452 4.94105 5.04665 5.06412 5.13264 5.19383 5.25026 5.27956 5.37547 5.45196 5.50943 5.52392 5.55186 5.68166 6.30274 6.41411 6.87516 7.11175 7.36347 8.12588 8.36069 9.31493 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.001949 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.931660 B =14366.029476 C =14805.303840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.178 3.822 11 H 0.041 0.959 12 C -0.127 4.127 13 C -0.104 4.104 14 C -0.117 4.117 15 C 0.160 3.840 16 H 0.079 0.921 17 N -0.703 5.703 18 C 0.606 3.394 19 O -0.565 6.565 20 C -0.123 4.123 21 C 0.108 3.892 22 N -0.336 5.336 23 C 0.103 3.897 24 C -0.143 4.143 25 C -0.123 4.123 26 C -0.146 4.146 27 N -0.091 5.091 28 N -0.226 5.226 29 C -0.117 4.117 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.412 0.588 39 H 0.231 0.769 40 H 0.144 0.856 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -33.986 8.082 35.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.376 5.376 10 C 0.069 3.931 11 H 0.059 0.941 12 C -0.167 4.167 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.055 3.945 16 H 0.097 0.903 17 N -0.352 5.352 18 C 0.391 3.609 19 O -0.444 6.444 20 C -0.263 4.263 21 C -0.050 4.050 22 N -0.121 5.121 23 C 0.003 3.997 24 C -0.181 4.181 25 C -0.161 4.161 26 C -0.184 4.184 27 N -0.070 5.070 28 N -0.099 5.099 29 C -0.156 4.156 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.248 0.752 39 H 0.247 0.753 40 H 0.162 0.838 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.011 -33.876 8.152 34.973 hybrid contribution 0.176 1.381 -0.076 1.395 sum 3.186 -32.495 8.075 33.635 Atomic orbital electron populations 1.69820 1.06530 1.25885 1.59846 1.25534 0.96378 1.00975 1.04107 0.85176 0.77712 0.79740 0.77374 1.21478 1.22348 1.19515 1.19613 0.91398 0.85237 1.40523 0.90732 1.42598 1.05435 1.00877 1.88688 1.20312 0.93828 0.84545 0.94394 0.94135 1.22103 0.99624 0.96628 0.98385 1.21406 0.98087 0.93409 1.01401 1.21826 1.00449 0.98703 0.94544 1.20867 0.93677 0.85273 0.94676 0.90296 1.45867 1.11324 1.20104 1.57945 1.16911 0.86174 0.80799 0.76969 1.90780 1.14061 1.78947 1.60571 1.21465 0.90436 1.00397 1.14008 1.23629 0.96318 0.90893 0.94209 1.50894 1.04509 1.17976 1.38674 1.24059 1.03492 0.75805 0.96327 1.23570 0.93887 0.97196 1.03454 1.22732 1.00135 0.95219 0.98020 1.23464 1.02310 0.94426 0.98221 1.81916 1.08343 0.99576 1.17182 1.74625 1.10582 1.13417 1.11307 1.21902 0.99155 0.93264 1.01253 0.94155 0.79571 0.93084 0.93754 0.90439 0.91820 0.91248 0.91454 0.75186 0.75265 0.83802 0.88222 0.88145 0.87621 0.88933 0.89262 0.89887 0.92264 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.97 46.94 29.55 68.60 2.03 48.96 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.24 -13.26 9.93 84.03 0.83 -12.43 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -37.55 5.12 -322.94 -1.65 -39.20 16 10 C 0.18 7.08 2.77 44.99 0.12 7.21 16 11 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 12 C -0.13 -4.49 5.50 30.60 0.17 -4.32 16 13 C -0.10 -2.86 5.92 30.59 0.18 -2.68 16 14 C -0.12 -3.06 5.49 30.60 0.17 -2.90 16 15 C 0.16 4.58 2.46 45.01 0.11 4.69 16 16 H 0.08 2.48 7.57 -2.39 -0.02 2.46 16 17 N -0.70 -18.74 5.07 -445.63 -2.26 -21.00 16 18 C 0.61 16.60 7.78 86.69 0.67 17.27 16 19 O -0.57 -17.64 16.53 -4.03 -0.07 -17.70 16 20 C -0.12 -2.94 6.99 40.82 0.29 -2.65 16 21 C 0.11 1.81 10.49 83.85 0.88 2.69 16 22 N -0.34 -5.28 3.83 -324.03 -1.24 -6.52 16 23 C 0.10 0.74 5.05 45.52 0.23 0.97 16 24 C -0.14 -0.35 7.47 31.18 0.23 -0.12 16 25 C -0.12 -0.08 8.09 31.18 0.25 0.17 16 26 C -0.15 -0.72 7.88 31.12 0.25 -0.47 16 27 N -0.09 -2.13 13.78 37.02 0.51 -1.62 16 28 N -0.23 -5.91 12.04 -49.99 -0.60 -6.51 16 29 C -0.12 -3.88 4.86 30.61 0.15 -3.73 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.37 20.36 7.80 -92.71 -0.72 19.64 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.41 10.31 8.29 -92.71 -0.77 9.54 16 39 H 0.23 2.30 6.78 -2.91 -0.02 2.28 16 40 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 0.22 6.39 -2.38 -0.02 0.20 16 42 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -73.28 391.52 1.49 -71.78 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.51 Total: 32.06 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.00 Total: -0.37 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -4.96 Total: -134.74 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.07 Total: -17.70 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -73.28 1.49 -71.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981093949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.743 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds