Wall clock time and date at job start Tue Mar 31 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99425 * 2 1 4 4 H 1.48505 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47119 * 299.99604 * 3 2 1 6 6 H 1.48505 * 109.47303 * 59.99865 * 3 2 1 7 7 C 1.38811 * 120.00697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99693 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99835 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47709 * 34.99982 * 10 9 7 12 12 C 1.52997 * 109.47126 * 275.00049 * 10 9 7 13 13 C 1.52998 * 109.47499 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47016 * 59.99753 * 13 12 10 15 15 C 1.52997 * 109.47188 * 300.00437 * 14 13 12 16 16 H 1.09001 * 109.46979 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.46930 * 300.00126 * 15 14 13 18 18 C 1.34777 * 119.99854 * 274.99613 * 17 15 14 19 19 O 1.21603 * 119.99960 * 0.02562 * 18 17 15 20 20 C 1.47523 * 120.00283 * 180.27861 * 18 17 15 21 21 C 1.36594 * 125.77562 * 179.73080 * 20 18 17 22 22 N 1.34813 * 106.84324 * 179.97438 * 21 20 18 23 23 C 1.46497 * 126.59743 * 179.97438 * 22 21 20 24 24 C 1.53782 * 113.61457 * 14.13349 * 23 22 21 25 25 C 1.53955 * 87.02090 * 220.05033 * 24 23 22 26 26 C 1.53780 * 87.11017 * 25.36442 * 25 24 23 27 27 N 1.40216 * 106.80599 * 359.97438 * 22 21 20 28 28 N 1.28758 * 108.37007 * 359.74519 * 27 22 21 29 29 C 1.52999 * 109.46947 * 155.00551 * 10 9 7 30 30 H 0.96996 * 120.00169 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99912 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.47320 * 300.00343 * 12 10 9 33 33 H 1.08999 * 109.47816 * 59.99835 * 12 10 9 34 34 H 1.09000 * 109.47770 * 179.97438 * 13 12 10 35 35 H 1.09007 * 109.46895 * 300.00334 * 13 12 10 36 36 H 1.09000 * 109.46807 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.47027 * 60.00683 * 14 13 12 38 38 H 0.96990 * 120.00418 * 95.00335 * 17 15 14 39 39 H 1.08008 * 126.57883 * 359.95020 * 21 20 18 40 40 H 1.09000 * 112.85132 * 145.33136 * 23 22 21 41 41 H 1.08997 * 113.61338 * 334.57092 * 24 23 22 42 42 H 1.08995 * 113.61566 * 105.46688 * 24 23 22 43 43 H 1.08991 * 113.53779 * 270.81026 * 25 24 23 44 44 H 1.09003 * 113.74054 * 139.94095 * 25 24 23 45 45 H 1.09003 * 113.61201 * 220.08739 * 26 25 24 46 46 H 1.09002 * 113.61533 * 89.19111 * 26 25 24 47 47 H 1.08998 * 109.47755 * 59.99511 * 29 10 9 48 48 H 1.09000 * 109.46973 * 299.99254 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2019 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0005 11 1 2.9690 -3.5504 0.5899 12 6 2.4223 -4.0354 -1.4364 13 6 3.1869 -5.3607 -1.4366 14 6 2.3092 -6.4558 -0.8271 15 6 1.9453 -6.0771 0.6098 16 1 1.3197 -6.8571 1.0438 17 7 3.1694 -5.9347 1.4022 18 6 3.7355 -7.0189 1.9684 19 8 3.2305 -8.1152 1.8212 20 6 4.9646 -6.8747 2.7714 21 6 5.6314 -7.8879 3.3997 22 7 6.6936 -7.3327 4.0169 23 6 7.7008 -8.0310 4.8194 24 6 7.6712 -9.5593 4.6511 25 6 7.9216 -9.6506 6.1674 26 6 7.2749 -8.2599 6.2792 27 7 6.6489 -5.9582 3.7430 28 7 5.6214 -5.7252 3.0028 29 6 1.1812 -4.7521 0.6100 30 1 -0.4850 0.8400 -0.0004 31 1 0.3558 -2.3881 -0.0002 32 1 1.5116 -4.1417 -2.0260 33 1 3.0471 -3.2551 -1.8709 34 1 3.4458 -5.6308 -2.4604 35 1 4.0976 -5.2548 -0.8470 36 1 2.8541 -7.3999 -0.8269 37 1 1.3986 -6.5618 -1.4167 38 1 3.5723 -5.0603 1.5194 39 1 5.3596 -8.9332 3.4019 40 1 8.6966 -7.5997 4.7175 41 1 6.6992 -9.9461 4.3451 42 1 8.4915 -9.9481 4.0479 43 1 8.9783 -9.6634 6.4341 44 1 7.3512 -10.4382 6.6598 45 1 7.7759 -7.6011 6.9886 46 1 6.1943 -8.2908 6.4192 47 1 0.2705 -4.8584 0.0206 48 1 0.9220 -4.4823 1.6338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981093952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:32 Heat of formation + Delta-G solvation = 82.293404 kcal Electronic energy + Delta-G solvation = -28622.275885 eV Core-core repulsion = 24714.827985 eV Total energy + Delta-G solvation = -3907.447900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46690 -39.92804 -39.28086 -37.76801 -34.43493 -33.51912 -32.83630 -31.22834 -31.02548 -29.43389 -27.80549 -26.56695 -26.44804 -24.03659 -23.55566 -22.63979 -21.98090 -21.09895 -20.72701 -20.12635 -18.78111 -18.54843 -17.14473 -16.64840 -16.49317 -15.90202 -15.64854 -15.32588 -14.89781 -14.68177 -14.33300 -14.18840 -13.78269 -13.55259 -13.40623 -13.26810 -13.12927 -12.98430 -12.53421 -12.38084 -12.23808 -12.00417 -11.81301 -11.67234 -11.51388 -11.38961 -11.10826 -10.94211 -10.84430 -10.69666 -10.48273 -10.32242 -10.11633 -10.09502 -10.02959 -9.67429 -9.47017 -9.44362 -8.87547 -8.76920 -6.90684 -5.71968 -3.00308 0.93960 1.64745 1.75941 3.22521 3.32081 3.47219 3.51988 3.53448 3.55345 3.70611 4.00168 4.04034 4.06222 4.49587 4.61662 4.62884 4.80530 4.88103 4.93664 5.06230 5.09692 5.15262 5.16470 5.22328 5.25112 5.28458 5.52737 5.55885 5.64184 5.68642 5.76058 5.84309 5.94480 6.03912 6.13205 6.14941 6.17166 6.32404 6.36762 6.58482 6.63576 6.70752 6.78820 7.02511 7.15939 7.57842 7.76549 7.87577 8.27290 8.46720 9.58103 10.15658 10.50278 11.50796 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002606 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.872074 B =10741.268411 C =12083.905468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.044 0.956 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.086 0.914 17 N -0.700 5.700 18 C 0.604 3.396 19 O -0.548 6.548 20 C -0.099 4.099 21 C 0.089 3.911 22 N -0.352 5.352 23 C 0.122 3.878 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.146 4.146 27 N -0.064 5.064 28 N -0.200 5.200 29 C -0.134 4.134 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.412 0.588 39 H 0.201 0.799 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.011 -23.599 9.879 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.062 0.938 12 C -0.176 4.176 13 C -0.155 4.155 14 C -0.165 4.165 15 C 0.047 3.953 16 H 0.104 0.896 17 N -0.351 5.351 18 C 0.388 3.612 19 O -0.426 6.426 20 C -0.238 4.238 21 C -0.068 4.068 22 N -0.137 5.137 23 C 0.020 3.980 24 C -0.186 4.186 25 C -0.173 4.173 26 C -0.184 4.184 27 N -0.043 5.043 28 N -0.073 5.073 29 C -0.172 4.172 30 H 0.063 0.937 31 H 0.217 0.783 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.218 0.782 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.464 -22.838 10.007 29.341 hybrid contribution 0.028 0.472 -0.105 0.485 sum 15.493 -22.366 9.902 28.954 Atomic orbital electron populations 1.69669 1.05076 1.25438 1.58049 1.24730 0.95500 0.97645 1.03209 0.86149 0.78891 0.84286 0.77105 1.20510 1.21980 1.21942 1.19291 0.91035 0.84081 1.42140 0.91109 1.42421 1.05760 0.99728 1.88538 1.20166 0.94062 0.85929 0.92974 0.93785 1.22275 0.99719 0.95194 1.00451 1.21517 0.98613 0.95634 0.99715 1.21901 1.00604 0.98606 0.95420 1.21012 0.84893 0.98557 0.90842 0.89589 1.46030 1.27517 1.10544 1.50994 1.16753 0.81574 0.84688 0.78222 1.90776 1.63454 1.25796 1.62555 1.21551 1.02433 0.89603 1.10232 1.23191 0.88072 1.01156 0.94332 1.50591 1.19363 1.08161 1.35577 1.23431 0.91564 0.92103 0.90901 1.23508 1.04333 0.92291 0.98441 1.22742 1.02074 0.97326 0.95201 1.23452 1.02569 0.97837 0.94565 1.82036 1.15772 0.90643 1.15896 1.74715 1.01316 1.23637 1.07680 1.22124 0.99248 0.93530 1.02341 0.93652 0.78288 0.92585 0.92071 0.92878 0.92512 0.92058 0.91036 0.75076 0.78237 0.84819 0.88534 0.89297 0.89004 0.89728 0.89554 0.88933 0.90415 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -18.02 5.12 -53.43 -0.27 -18.30 16 10 C 0.18 3.49 2.60 -67.93 -0.18 3.31 16 11 H 0.04 0.89 6.44 -51.93 -0.33 0.55 16 12 C -0.14 -2.44 5.50 -26.73 -0.15 -2.59 16 13 C -0.12 -1.73 5.77 -26.73 -0.15 -1.88 16 14 C -0.13 -1.75 5.60 -26.73 -0.15 -1.90 16 15 C 0.15 2.20 2.78 -67.95 -0.19 2.01 16 16 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 17 N -0.70 -10.31 4.23 -54.87 -0.23 -10.55 16 18 C 0.60 8.90 7.78 -12.48 -0.10 8.81 16 19 O -0.55 -8.88 16.53 5.27 0.09 -8.79 16 20 C -0.10 -1.32 6.99 -83.55 -0.58 -1.91 16 21 C 0.09 0.89 10.49 -16.84 -0.18 0.72 16 22 N -0.35 -3.36 3.83 -53.77 -0.21 -3.56 16 23 C 0.12 0.66 5.05 -67.12 -0.34 0.32 16 24 C -0.15 -0.47 7.47 -25.83 -0.19 -0.66 16 25 C -0.14 -0.32 8.09 -25.83 -0.21 -0.53 16 26 C -0.15 -0.63 7.88 -25.92 -0.20 -0.83 16 27 N -0.06 -0.86 13.78 60.35 0.83 -0.03 16 28 N -0.20 -2.97 12.04 32.85 0.40 -2.57 16 29 C -0.13 -2.19 5.07 -26.76 -0.14 -2.33 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.14 7.80 -40.82 -0.32 9.83 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.86 7.60 -51.93 -0.39 0.47 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 6.34 6.55 -40.82 -0.27 6.07 16 39 H 0.20 1.37 6.79 -52.48 -0.36 1.02 16 40 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.30 6.39 -51.93 -0.33 -0.03 16 42 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -33.67 387.09 -8.30 -41.97 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.44 Total: 10.60 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.00 Total: -4.67 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 1.24 Total: -62.67 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.67 -8.30 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981093952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.268 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds