Wall clock time and date at job start Tue Mar 31 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99425 * 2 1 4 4 H 1.48505 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47119 * 299.99604 * 3 2 1 6 6 H 1.48505 * 109.47303 * 59.99865 * 3 2 1 7 7 C 1.38811 * 120.00697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99693 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99835 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47709 * 34.99982 * 10 9 7 12 12 C 1.52997 * 109.47126 * 275.00049 * 10 9 7 13 13 C 1.52998 * 109.47499 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47016 * 59.99753 * 13 12 10 15 15 C 1.52997 * 109.47188 * 300.00437 * 14 13 12 16 16 H 1.09001 * 109.46979 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.46930 * 300.00126 * 15 14 13 18 18 C 1.34777 * 119.99854 * 274.99613 * 17 15 14 19 19 O 1.21603 * 119.99960 * 0.02562 * 18 17 15 20 20 C 1.47523 * 120.00283 * 180.27861 * 18 17 15 21 21 C 1.36594 * 125.77562 * 179.73080 * 20 18 17 22 22 N 1.34813 * 106.84324 * 179.97438 * 21 20 18 23 23 C 1.46497 * 126.59743 * 179.97438 * 22 21 20 24 24 C 1.53782 * 113.61457 * 14.13349 * 23 22 21 25 25 C 1.53955 * 87.02090 * 220.05033 * 24 23 22 26 26 C 1.53780 * 87.11017 * 25.36442 * 25 24 23 27 27 N 1.40216 * 106.80599 * 359.97438 * 22 21 20 28 28 N 1.28758 * 108.37007 * 359.74519 * 27 22 21 29 29 C 1.52999 * 109.46947 * 155.00551 * 10 9 7 30 30 H 0.96996 * 120.00169 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99912 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.47320 * 300.00343 * 12 10 9 33 33 H 1.08999 * 109.47816 * 59.99835 * 12 10 9 34 34 H 1.09000 * 109.47770 * 179.97438 * 13 12 10 35 35 H 1.09007 * 109.46895 * 300.00334 * 13 12 10 36 36 H 1.09000 * 109.46807 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.47027 * 60.00683 * 14 13 12 38 38 H 0.96990 * 120.00418 * 95.00335 * 17 15 14 39 39 H 1.08008 * 126.57883 * 359.95020 * 21 20 18 40 40 H 1.09000 * 112.85132 * 145.33136 * 23 22 21 41 41 H 1.08997 * 113.61338 * 334.57092 * 24 23 22 42 42 H 1.08995 * 113.61566 * 105.46688 * 24 23 22 43 43 H 1.08991 * 113.53779 * 270.81026 * 25 24 23 44 44 H 1.09003 * 113.74054 * 139.94095 * 25 24 23 45 45 H 1.09003 * 113.61201 * 220.08739 * 26 25 24 46 46 H 1.09002 * 113.61533 * 89.19111 * 26 25 24 47 47 H 1.08998 * 109.47755 * 59.99511 * 29 10 9 48 48 H 1.09000 * 109.46973 * 299.99254 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2019 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0005 11 1 2.9690 -3.5504 0.5899 12 6 2.4223 -4.0354 -1.4364 13 6 3.1869 -5.3607 -1.4366 14 6 2.3092 -6.4558 -0.8271 15 6 1.9453 -6.0771 0.6098 16 1 1.3197 -6.8571 1.0438 17 7 3.1694 -5.9347 1.4022 18 6 3.7355 -7.0189 1.9684 19 8 3.2305 -8.1152 1.8212 20 6 4.9646 -6.8747 2.7714 21 6 5.6314 -7.8879 3.3997 22 7 6.6936 -7.3327 4.0169 23 6 7.7008 -8.0310 4.8194 24 6 7.6712 -9.5593 4.6511 25 6 7.9216 -9.6506 6.1674 26 6 7.2749 -8.2599 6.2792 27 7 6.6489 -5.9582 3.7430 28 7 5.6214 -5.7252 3.0028 29 6 1.1812 -4.7521 0.6100 30 1 -0.4850 0.8400 -0.0004 31 1 0.3558 -2.3881 -0.0002 32 1 1.5116 -4.1417 -2.0260 33 1 3.0471 -3.2551 -1.8709 34 1 3.4458 -5.6308 -2.4604 35 1 4.0976 -5.2548 -0.8470 36 1 2.8541 -7.3999 -0.8269 37 1 1.3986 -6.5618 -1.4167 38 1 3.5723 -5.0603 1.5194 39 1 5.3596 -8.9332 3.4019 40 1 8.6966 -7.5997 4.7175 41 1 6.6992 -9.9461 4.3451 42 1 8.4915 -9.9481 4.0479 43 1 8.9783 -9.6634 6.4341 44 1 7.3512 -10.4382 6.6598 45 1 7.7759 -7.6011 6.9886 46 1 6.1943 -8.2908 6.4192 47 1 0.2705 -4.8584 0.0206 48 1 0.9220 -4.4823 1.6338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981093952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:32 Heat of formation + Delta-G solvation = 59.753304 kcal Electronic energy + Delta-G solvation = -28623.253297 eV Core-core repulsion = 24714.827985 eV Total energy + Delta-G solvation = -3908.425312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.33339 -41.08881 -39.76709 -39.07767 -36.14811 -34.60598 -33.99781 -32.92572 -32.13209 -30.71778 -29.48016 -27.06977 -26.81875 -25.70920 -24.90254 -23.38233 -23.23611 -22.51585 -21.86685 -20.58555 -20.05788 -19.50573 -19.03292 -17.59953 -17.18178 -16.91603 -16.75501 -16.47058 -16.20627 -15.74547 -15.69907 -15.48910 -15.03206 -14.98162 -14.75399 -14.18900 -13.88387 -13.74396 -13.52922 -13.50168 -13.24692 -13.07870 -13.02579 -12.90775 -12.87729 -12.80464 -12.20084 -12.03810 -12.01950 -11.94905 -11.84406 -11.59923 -11.50651 -11.45511 -11.19626 -11.13474 -10.98945 -10.84394 -10.40284 -9.97792 -8.97455 -7.92573 -5.19967 0.12037 0.60317 1.07288 1.46941 1.47450 1.57413 2.15187 2.23839 2.56906 3.07413 3.18745 3.37961 3.40588 3.59510 3.69860 3.75446 3.77009 3.89300 3.89879 3.94777 4.16386 4.31525 4.32352 4.38105 4.45069 4.57605 4.60267 4.65737 4.69545 4.74067 4.76351 4.85023 4.90661 4.93909 4.97854 5.06286 5.10837 5.20291 5.25473 5.28737 5.38256 5.48981 5.52232 5.52685 5.56793 5.67348 6.30410 6.42970 6.88841 7.12919 7.36520 8.12995 8.36081 9.31028 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002606 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.872074 B =10741.268411 C =12083.905468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.232 4.232 8 H 0.072 0.928 9 N -0.736 5.736 10 C 0.175 3.825 11 H 0.037 0.963 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.120 4.120 15 C 0.158 3.842 16 H 0.093 0.907 17 N -0.703 5.703 18 C 0.607 3.393 19 O -0.564 6.564 20 C -0.125 4.125 21 C 0.109 3.891 22 N -0.336 5.336 23 C 0.102 3.898 24 C -0.140 4.140 25 C -0.122 4.122 26 C -0.148 4.148 27 N -0.094 5.094 28 N -0.231 5.231 29 C -0.122 4.122 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.407 0.593 39 H 0.234 0.766 40 H 0.143 0.857 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.657 -26.130 10.283 32.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.364 4.364 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.055 0.945 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.158 4.158 15 C 0.054 3.946 16 H 0.111 0.889 17 N -0.353 5.353 18 C 0.392 3.608 19 O -0.443 6.443 20 C -0.265 4.265 21 C -0.050 4.050 22 N -0.120 5.120 23 C 0.002 3.998 24 C -0.178 4.178 25 C -0.160 4.160 26 C -0.186 4.186 27 N -0.073 5.073 28 N -0.104 5.104 29 C -0.160 4.160 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.244 0.756 39 H 0.250 0.750 40 H 0.161 0.839 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.176 -25.400 10.425 32.386 hybrid contribution -0.398 1.142 -0.151 1.219 sum 16.778 -24.258 10.274 31.233 Atomic orbital electron populations 1.69810 1.06419 1.25770 1.60006 1.25485 0.96356 1.00821 1.04236 0.85162 0.78252 0.80338 0.76603 1.19306 1.22081 1.22180 1.19601 0.91243 0.85312 1.40201 0.91046 1.42610 1.05449 1.00879 1.88600 1.20368 0.93875 0.84877 0.94196 0.94539 1.22090 0.99598 0.96370 0.98604 1.21417 0.98077 0.94021 1.00921 1.21863 1.01068 0.98203 0.94688 1.20956 0.84820 0.97235 0.91638 0.88854 1.46052 1.27545 1.10489 1.51210 1.16870 0.81772 0.84252 0.77899 1.90756 1.64099 1.26114 1.63287 1.21572 1.02779 0.90426 1.11744 1.23641 0.87075 1.01843 0.92393 1.50917 1.19514 1.07048 1.34558 1.24062 0.91109 0.93412 0.91189 1.23559 1.05145 0.89838 0.99295 1.22731 1.02830 0.95941 0.94509 1.23476 1.02141 0.99417 0.93605 1.81938 1.15850 0.92923 1.16617 1.74680 1.02139 1.24871 1.08704 1.21972 0.99167 0.93447 1.01458 0.94153 0.79483 0.92768 0.94351 0.91089 0.92939 0.91365 0.89578 0.75605 0.74966 0.83906 0.88101 0.87979 0.87624 0.88861 0.89470 0.89976 0.89677 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.14 13.06 21.65 0.28 -59.85 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 47.45 29.55 68.60 2.03 49.47 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 7 C -0.23 -13.08 9.93 84.03 0.83 -12.25 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -37.35 5.12 -322.96 -1.65 -39.00 16 10 C 0.18 6.89 2.60 44.99 0.12 7.01 16 11 H 0.04 1.50 6.44 -2.39 -0.02 1.48 16 12 C -0.13 -4.50 5.50 30.59 0.17 -4.33 16 13 C -0.11 -2.98 5.77 30.60 0.18 -2.81 16 14 C -0.12 -3.05 5.60 30.60 0.17 -2.88 16 15 C 0.16 4.40 2.78 44.97 0.13 4.52 16 16 H 0.09 2.54 7.58 -2.39 -0.02 2.52 16 17 N -0.70 -20.42 4.23 -445.77 -1.88 -22.30 16 18 C 0.61 17.41 7.78 86.69 0.67 18.09 16 19 O -0.56 -17.37 16.53 -4.04 -0.07 -17.44 16 20 C -0.12 -3.28 6.99 40.82 0.29 -3.00 16 21 C 0.11 2.00 10.49 83.85 0.88 2.88 16 22 N -0.34 -5.99 3.83 -324.04 -1.24 -7.23 16 23 C 0.10 0.91 5.05 45.52 0.23 1.14 16 24 C -0.14 -0.46 7.47 31.18 0.23 -0.23 16 25 C -0.12 -0.22 8.09 31.18 0.25 0.04 16 26 C -0.15 -1.01 7.88 31.12 0.25 -0.76 16 27 N -0.09 -2.52 13.78 37.02 0.51 -2.01 16 28 N -0.23 -6.94 12.04 -49.99 -0.60 -7.54 16 29 C -0.12 -3.96 5.07 30.58 0.16 -3.80 16 30 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.37 20.24 7.80 -92.71 -0.72 19.52 16 32 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.53 7.60 -2.38 -0.02 1.52 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.41 12.72 6.55 -92.72 -0.61 12.11 16 39 H 0.23 2.50 6.79 -2.91 -0.02 2.48 16 40 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 0.27 6.39 -2.39 -0.02 0.26 16 42 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -73.60 387.09 2.04 -71.56 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.34 Total: 34.76 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.01 Total: -0.42 kcal Atomic # 7 Polarization: -133.35 SS G_CDS: -4.59 Total: -137.93 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.07 Total: -17.44 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -73.60 2.04 -71.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981093952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.312 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds