Wall clock time and date at job start Tue Mar 31 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48497 * 109.47179 * 239.99570 * 3 2 1 5 5 H 1.48494 * 109.47438 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46863 * 120.00162 * 3 2 1 7 7 C 1.38805 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99945 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47136 * 325.00109 * 10 9 7 12 12 C 1.53006 * 109.47228 * 85.00006 * 10 9 7 13 13 C 1.53001 * 109.47149 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46985 * 300.00186 * 13 12 10 15 15 C 1.53001 * 109.47412 * 60.00273 * 14 13 12 16 16 H 1.08995 * 109.47222 * 59.99421 * 15 14 13 17 17 N 1.46501 * 109.47202 * 179.97438 * 15 14 13 18 18 C 1.34771 * 119.99610 * 274.99900 * 17 15 14 19 19 O 1.21274 * 120.00611 * 359.97438 * 18 17 15 20 20 C 1.50709 * 119.99709 * 180.02562 * 18 17 15 21 21 N 1.46498 * 109.47095 * 179.97438 * 20 18 17 22 22 C 1.35317 * 125.86775 * 124.99970 * 21 20 18 23 23 C 1.35353 * 106.17269 * 180.02562 * 22 21 20 24 24 C 1.50699 * 126.74639 * 180.02562 * 23 22 21 25 25 C 1.53000 * 117.50321 * 84.99945 * 24 23 22 26 26 C 1.52997 * 117.50247 * 16.37045 * 24 23 22 27 27 N 1.33772 * 106.50026 * 0.26147 * 23 22 21 28 28 N 1.28641 * 108.88367 * 359.56251 * 27 23 22 29 29 C 1.53000 * 109.47035 * 205.00056 * 10 9 7 30 30 H 0.96996 * 119.99822 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99906 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47042 * 299.99738 * 12 10 9 33 33 H 1.09000 * 109.46656 * 59.99654 * 12 10 9 34 34 H 1.09001 * 109.46790 * 59.99902 * 13 12 10 35 35 H 1.08993 * 109.47011 * 180.02562 * 13 12 10 36 36 H 1.08995 * 109.47400 * 299.99803 * 14 13 12 37 37 H 1.08999 * 109.46877 * 179.97438 * 14 13 12 38 38 H 0.96995 * 119.99820 * 94.99487 * 17 15 14 39 39 H 1.09000 * 109.46954 * 59.99406 * 20 18 17 40 40 H 1.08994 * 109.46825 * 300.00099 * 20 18 17 41 41 H 1.07999 * 126.90790 * 359.97438 * 22 21 20 42 42 H 1.09002 * 115.55636 * 230.68345 * 24 23 22 43 43 H 1.08990 * 117.49990 * 145.01584 * 25 24 23 44 44 H 1.09004 * 117.49237 * 359.97438 * 25 24 23 45 45 H 1.08999 * 117.49685 * 0.02562 * 26 24 23 46 46 H 1.08997 * 117.50044 * 214.98057 * 26 24 23 47 47 H 1.08998 * 109.47354 * 59.99599 * 29 10 9 48 48 H 1.09006 * 109.46801 * 300.00193 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9693 -3.5507 -0.5871 12 6 2.4210 -4.0349 1.4392 13 6 3.1855 -5.3602 1.4404 14 6 2.3083 -6.4555 0.8307 15 6 1.9456 -6.0774 -0.6068 16 1 2.8566 -5.9718 -1.1956 17 7 1.1061 -7.1265 -1.1907 18 6 1.6763 -8.2088 -1.7562 19 8 2.8841 -8.3141 -1.7822 20 6 0.8128 -9.2878 -2.3574 21 7 1.6645 -10.3470 -2.9040 22 6 1.5936 -11.6618 -2.5916 23 6 2.5562 -12.2746 -3.3196 24 6 2.8821 -13.7459 -3.3263 25 6 2.0665 -14.6460 -4.2567 26 6 1.8399 -14.7031 -2.7446 27 7 3.1647 -11.3167 -4.0279 28 7 2.6093 -10.1869 -3.7634 29 6 1.1815 -4.7524 -0.6082 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.0455 -3.2544 1.8736 33 1 1.5098 -4.1409 2.0279 34 1 4.0966 -5.2546 0.8515 35 1 3.4435 -5.6298 2.4644 36 1 1.3972 -6.5612 1.4196 37 1 2.8531 -7.3996 0.8312 38 1 0.1401 -7.0421 -1.1702 39 1 0.2040 -8.8633 -3.1558 40 1 0.1632 -9.7043 -1.5877 41 1 0.9076 -12.1280 -1.9000 42 1 3.9328 -13.9955 -3.1783 43 1 2.5806 -15.4877 -4.7207 44 1 1.2939 -14.1739 -4.8636 45 1 0.9183 -14.2687 -2.3574 46 1 2.2048 -15.5824 -2.2139 47 1 0.9230 -4.4829 -1.6322 48 1 0.2703 -4.8583 -0.0193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981135611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:13 Heat of formation + Delta-G solvation = 93.394616 kcal Electronic energy + Delta-G solvation = -27837.908660 eV Core-core repulsion = 23930.942144 eV Total energy + Delta-G solvation = -3906.966515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.52496 -40.20113 -38.16296 -37.63029 -34.90150 -34.65236 -33.45308 -31.19189 -30.98106 -30.18443 -28.49212 -27.67618 -24.41008 -23.83937 -23.27687 -22.62308 -21.96620 -21.39675 -20.81157 -20.44767 -19.51043 -18.01290 -17.78672 -17.04528 -16.23990 -16.22227 -16.04667 -15.41782 -15.05177 -14.82678 -14.59387 -14.45335 -13.99822 -13.88746 -13.65618 -13.26875 -13.18733 -12.78498 -12.57432 -12.23427 -12.13225 -11.98633 -11.80845 -11.46152 -11.15255 -11.05171 -11.02993 -10.89681 -10.79872 -10.73826 -10.55485 -10.42761 -10.33291 -10.23034 -10.10096 -9.76938 -9.65419 -9.28723 -9.17395 -8.90517 -7.00378 -5.80291 -3.09129 1.29178 1.84932 2.22449 2.28715 2.86263 3.37909 3.42542 3.47196 3.47885 3.83110 4.11661 4.22861 4.40778 4.42832 4.45838 4.52959 4.54652 4.84723 4.88511 4.98834 4.99548 5.19687 5.22572 5.40836 5.43385 5.46325 5.52345 5.60552 5.65183 5.66521 5.74832 5.78249 5.86844 5.89171 5.93970 6.06269 6.16571 6.18917 6.23868 6.40373 6.46024 6.52901 6.66010 6.90917 7.06488 7.20223 7.67570 7.88365 8.33180 8.38401 9.49716 10.06032 10.40817 11.42256 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.001827 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.644362 B =15319.035313 C =15543.752082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.150 3.850 16 H 0.090 0.910 17 N -0.717 5.717 18 C 0.500 3.500 19 O -0.508 6.508 20 C 0.095 3.905 21 N -0.281 5.281 22 C -0.050 4.050 23 C 0.009 3.991 24 C -0.071 4.071 25 C -0.165 4.165 26 C -0.170 4.170 27 N -0.264 5.264 28 N -0.048 5.048 29 C -0.129 4.129 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.401 0.599 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.189 0.811 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 -28.915 -2.220 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.162 4.162 15 C 0.046 3.954 16 H 0.108 0.892 17 N -0.368 5.368 18 C 0.282 3.718 19 O -0.382 6.382 20 C -0.031 4.031 21 N -0.074 5.074 22 C -0.200 4.200 23 C -0.128 4.128 24 C -0.091 4.091 25 C -0.203 4.203 26 C -0.208 4.208 27 N -0.131 5.131 28 N -0.028 5.028 29 C -0.168 4.168 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.235 0.765 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.206 0.794 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.088 0.912 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.256 -27.756 -3.123 27.959 hybrid contribution -1.134 0.420 0.912 1.514 sum -2.390 -27.336 -2.211 27.530 Atomic orbital electron populations 1.69647 1.05101 1.25777 1.57706 1.24731 0.95518 0.97682 1.02950 0.86274 0.78541 0.83525 0.77899 1.21244 1.21706 1.21257 1.19203 0.91021 0.84058 1.42750 0.91176 1.42376 1.05704 0.99663 1.88643 1.20095 0.94141 0.85530 0.92978 0.93302 1.22298 0.99721 0.95217 1.00487 1.21487 0.98553 0.95338 1.00004 1.21874 1.00147 0.98891 0.95261 1.21097 0.94495 0.85795 0.94013 0.89213 1.46041 1.10720 1.20831 1.59244 1.20160 0.89114 0.83245 0.79278 1.90849 1.13822 1.77283 1.56220 1.21921 0.91951 0.87614 1.01611 1.46727 1.24622 1.06815 1.29234 1.23222 1.05990 0.83755 1.06994 1.20984 0.96729 0.95792 0.99292 1.19995 0.98126 0.84621 1.06359 1.23001 1.02760 1.01569 0.92933 1.23019 1.00091 1.01108 0.96582 1.75104 1.21979 0.94828 1.21222 1.78496 0.99113 1.18882 1.06296 1.22089 0.99354 0.93173 1.02159 0.93488 0.78342 0.91805 0.92645 0.92115 0.92434 0.91972 0.92328 0.76451 0.85163 0.84720 0.79427 0.86009 0.88069 0.88683 0.88623 0.87932 0.91172 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.72 -17.36 5.12 -53.43 -0.27 -17.64 16 10 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 13 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.12 -1.54 5.49 -26.73 -0.15 -1.68 16 15 C 0.15 1.91 2.45 -67.95 -0.17 1.75 16 16 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 17 N -0.72 -6.79 5.08 -53.83 -0.27 -7.06 16 18 C 0.50 5.40 7.81 -10.98 -0.09 5.31 16 19 O -0.51 -8.21 15.34 5.56 0.09 -8.13 16 20 C 0.09 0.62 6.94 -5.19 -0.04 0.58 16 21 N -0.28 -2.94 3.20 -62.44 -0.20 -3.14 16 22 C -0.05 -0.43 10.89 -17.04 -0.19 -0.61 16 23 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 24 C -0.07 -0.55 6.33 -91.77 -0.58 -1.13 16 25 C -0.17 -0.99 10.24 -26.73 -0.27 -1.26 16 26 C -0.17 -0.83 10.02 -26.73 -0.27 -1.10 16 27 N -0.26 -3.87 12.41 33.29 0.41 -3.46 16 28 N -0.05 -0.71 12.13 60.35 0.73 0.02 16 29 C -0.13 -1.88 4.86 -26.75 -0.13 -2.01 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.40 2.46 8.60 -40.82 -0.35 2.11 16 39 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.13 0.28 8.07 -51.93 -0.42 -0.14 16 41 H 0.19 0.78 7.46 -52.49 -0.39 0.39 16 42 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.37 7.23 -51.93 -0.38 -0.01 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -36.56 395.54 -8.75 -45.31 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.71 Total: 6.55 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.18 Total: -8.71 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 1.12 Total: -58.14 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.56 -8.75 -45.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981135611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.702 kcal (2) G-P(sol) polarization free energy of solvation -36.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds