Wall clock time and date at job start Tue Mar 31 2020 18:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48497 * 109.47179 * 239.99570 * 3 2 1 5 5 H 1.48494 * 109.47438 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46863 * 120.00162 * 3 2 1 7 7 C 1.38805 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99945 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47136 * 325.00109 * 10 9 7 12 12 C 1.53006 * 109.47228 * 85.00006 * 10 9 7 13 13 C 1.53001 * 109.47149 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46985 * 300.00186 * 13 12 10 15 15 C 1.53001 * 109.47412 * 60.00273 * 14 13 12 16 16 H 1.08995 * 109.47222 * 59.99421 * 15 14 13 17 17 N 1.46501 * 109.47202 * 179.97438 * 15 14 13 18 18 C 1.34771 * 119.99610 * 274.99900 * 17 15 14 19 19 O 1.21274 * 120.00611 * 359.97438 * 18 17 15 20 20 C 1.50709 * 119.99709 * 180.02562 * 18 17 15 21 21 N 1.46498 * 109.47095 * 179.97438 * 20 18 17 22 22 C 1.35317 * 125.86775 * 124.99970 * 21 20 18 23 23 C 1.35353 * 106.17269 * 180.02562 * 22 21 20 24 24 C 1.50699 * 126.74639 * 180.02562 * 23 22 21 25 25 C 1.53000 * 117.50321 * 84.99945 * 24 23 22 26 26 C 1.52997 * 117.50247 * 16.37045 * 24 23 22 27 27 N 1.33772 * 106.50026 * 0.26147 * 23 22 21 28 28 N 1.28641 * 108.88367 * 359.56251 * 27 23 22 29 29 C 1.53000 * 109.47035 * 205.00056 * 10 9 7 30 30 H 0.96996 * 119.99822 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99906 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47042 * 299.99738 * 12 10 9 33 33 H 1.09000 * 109.46656 * 59.99654 * 12 10 9 34 34 H 1.09001 * 109.46790 * 59.99902 * 13 12 10 35 35 H 1.08993 * 109.47011 * 180.02562 * 13 12 10 36 36 H 1.08995 * 109.47400 * 299.99803 * 14 13 12 37 37 H 1.08999 * 109.46877 * 179.97438 * 14 13 12 38 38 H 0.96995 * 119.99820 * 94.99487 * 17 15 14 39 39 H 1.09000 * 109.46954 * 59.99406 * 20 18 17 40 40 H 1.08994 * 109.46825 * 300.00099 * 20 18 17 41 41 H 1.07999 * 126.90790 * 359.97438 * 22 21 20 42 42 H 1.09002 * 115.55636 * 230.68345 * 24 23 22 43 43 H 1.08990 * 117.49990 * 145.01584 * 25 24 23 44 44 H 1.09004 * 117.49237 * 359.97438 * 25 24 23 45 45 H 1.08999 * 117.49685 * 0.02562 * 26 24 23 46 46 H 1.08997 * 117.50044 * 214.98057 * 26 24 23 47 47 H 1.08998 * 109.47354 * 59.99599 * 29 10 9 48 48 H 1.09006 * 109.46801 * 300.00193 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9693 -3.5507 -0.5871 12 6 2.4210 -4.0349 1.4392 13 6 3.1855 -5.3602 1.4404 14 6 2.3083 -6.4555 0.8307 15 6 1.9456 -6.0774 -0.6068 16 1 2.8566 -5.9718 -1.1956 17 7 1.1061 -7.1265 -1.1907 18 6 1.6763 -8.2088 -1.7562 19 8 2.8841 -8.3141 -1.7822 20 6 0.8128 -9.2878 -2.3574 21 7 1.6645 -10.3470 -2.9040 22 6 1.5936 -11.6618 -2.5916 23 6 2.5562 -12.2746 -3.3196 24 6 2.8821 -13.7459 -3.3263 25 6 2.0665 -14.6460 -4.2567 26 6 1.8399 -14.7031 -2.7446 27 7 3.1647 -11.3167 -4.0279 28 7 2.6093 -10.1869 -3.7634 29 6 1.1815 -4.7524 -0.6082 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.0455 -3.2544 1.8736 33 1 1.5098 -4.1409 2.0279 34 1 4.0966 -5.2546 0.8515 35 1 3.4435 -5.6298 2.4644 36 1 1.3972 -6.5612 1.4196 37 1 2.8531 -7.3996 0.8312 38 1 0.1401 -7.0421 -1.1702 39 1 0.2040 -8.8633 -3.1558 40 1 0.1632 -9.7043 -1.5877 41 1 0.9076 -12.1280 -1.9000 42 1 3.9328 -13.9955 -3.1783 43 1 2.5806 -15.4877 -4.7207 44 1 1.2939 -14.1739 -4.8636 45 1 0.9183 -14.2687 -2.3574 46 1 2.2048 -15.5824 -2.2139 47 1 0.9230 -4.4829 -1.6322 48 1 0.2703 -4.8583 -0.0193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981135611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:12 Heat of formation + Delta-G solvation = 66.979948 kcal Electronic energy + Delta-G solvation = -27839.054086 eV Core-core repulsion = 23930.942144 eV Total energy + Delta-G solvation = -3908.111941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.27857 -41.15787 -39.37147 -38.14164 -36.31170 -35.43706 -34.89123 -32.96012 -31.69018 -31.22281 -29.77421 -28.85460 -25.72378 -25.02830 -24.13209 -23.32898 -23.06235 -22.34583 -21.68222 -21.31135 -20.77845 -19.27264 -18.59389 -18.45836 -17.31232 -17.01801 -16.66647 -16.43691 -16.19540 -15.88351 -15.51687 -15.42600 -15.27750 -15.10625 -15.02149 -14.68651 -14.27736 -13.90893 -13.54533 -13.43811 -13.19293 -12.91744 -12.81046 -12.55047 -12.30678 -12.28926 -12.19483 -12.10320 -12.06725 -11.98587 -11.83424 -11.67202 -11.55498 -11.41820 -11.27450 -11.14436 -10.88599 -10.75260 -10.14033 -9.96918 -9.00362 -7.94977 -5.22384 0.58046 1.26011 1.43721 1.46737 1.48454 1.50290 1.54522 2.07870 2.55720 2.90483 3.26670 3.38167 3.51364 3.62165 3.74826 3.85060 3.91657 4.00620 4.01962 4.04395 4.08657 4.23603 4.29405 4.31294 4.41687 4.42846 4.51489 4.56225 4.64574 4.75384 4.79905 4.87111 4.99551 4.99837 5.08798 5.14330 5.20174 5.21261 5.24125 5.32432 5.33066 5.40794 5.48964 5.52174 5.56542 5.64126 6.27988 6.44701 7.13332 7.34715 7.53029 8.10217 8.34378 9.27830 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.001827 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.644362 B =15319.035313 C =15543.752082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.030 0.970 12 C -0.126 4.126 13 C -0.109 4.109 14 C -0.113 4.113 15 C 0.161 3.839 16 H 0.060 0.940 17 N -0.701 5.701 18 C 0.498 3.502 19 O -0.568 6.568 20 C 0.095 3.905 21 N -0.279 5.279 22 C -0.030 4.030 23 C -0.010 4.010 24 C -0.098 4.098 25 C -0.168 4.168 26 C -0.143 4.143 27 N -0.313 5.313 28 N -0.105 5.105 29 C -0.113 4.113 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.422 0.578 39 H 0.159 0.841 40 H 0.193 0.807 41 H 0.239 0.761 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.062 0.938 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 -31.342 -0.877 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.066 3.934 11 H 0.048 0.952 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.152 4.152 15 C 0.055 3.945 16 H 0.078 0.922 17 N -0.354 5.354 18 C 0.283 3.717 19 O -0.446 6.446 20 C -0.029 4.029 21 N -0.073 5.073 22 C -0.181 4.181 23 C -0.148 4.148 24 C -0.118 4.118 25 C -0.205 4.205 26 C -0.180 4.180 27 N -0.179 5.179 28 N -0.083 5.083 29 C -0.152 4.152 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.260 0.740 39 H 0.176 0.824 40 H 0.211 0.789 41 H 0.256 0.744 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.132 0.868 46 H 0.136 0.864 47 H 0.080 0.920 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.285 -30.198 -1.789 30.429 hybrid contribution -0.484 1.097 0.505 1.301 sum -3.770 -29.101 -1.284 29.372 Atomic orbital electron populations 1.69781 1.06301 1.26012 1.59530 1.25452 0.96365 1.00695 1.03889 0.85314 0.77312 0.79752 0.78012 1.20823 1.21990 1.20597 1.19527 0.91239 0.85453 1.41032 0.91286 1.42524 1.05450 1.00654 1.88739 1.20314 0.93820 0.84990 0.94261 0.95211 1.22090 0.99738 0.96189 0.98560 1.21422 0.98037 0.94068 1.01213 1.21784 1.00637 0.97936 0.94812 1.20704 0.93594 0.85916 0.94276 0.92206 1.45767 1.11469 1.19683 1.58479 1.20888 0.88800 0.83827 0.78209 1.90842 1.16703 1.78598 1.58446 1.22364 0.90774 0.85981 1.03767 1.47040 1.23821 1.08272 1.28147 1.23974 1.05298 0.82826 1.05953 1.21587 0.97221 0.96641 0.99363 1.20065 0.98642 0.83778 1.09334 1.23051 1.02253 1.01174 0.94037 1.23172 0.99288 1.00127 0.95427 1.75015 1.23711 0.95976 1.23174 1.78410 1.01516 1.19409 1.08994 1.21855 0.99226 0.92617 1.01513 0.94040 0.79259 0.94328 0.92302 0.93052 0.90595 0.89858 0.92373 0.73988 0.82362 0.78948 0.74446 0.86953 0.87263 0.89302 0.86768 0.86367 0.91971 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.24 -13.25 9.93 84.03 0.83 -12.42 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -35.68 5.12 -322.94 -1.65 -37.34 16 10 C 0.17 6.60 2.77 44.99 0.12 6.73 16 11 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 12 C -0.13 -4.21 5.50 30.60 0.17 -4.04 16 13 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16 14 C -0.11 -2.58 5.49 30.59 0.17 -2.41 16 15 C 0.16 3.90 2.45 44.98 0.11 4.01 16 16 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 17 N -0.70 -11.46 5.08 -442.61 -2.25 -13.71 16 18 C 0.50 9.75 7.81 87.66 0.68 10.43 16 19 O -0.57 -18.39 15.34 -3.01 -0.05 -18.43 16 20 C 0.09 0.88 6.94 85.64 0.59 1.47 16 21 N -0.28 -5.27 3.20 -351.46 -1.12 -6.39 16 22 C -0.03 -0.43 10.89 83.49 0.91 0.48 16 23 C -0.01 -0.21 6.88 41.60 0.29 0.08 16 24 C -0.10 -1.43 6.33 -11.54 -0.07 -1.51 16 25 C -0.17 -1.76 10.24 30.60 0.31 -1.44 16 26 C -0.14 -0.94 10.02 30.60 0.31 -0.63 16 27 N -0.31 -9.51 12.41 -48.60 -0.60 -10.11 16 28 N -0.10 -3.13 12.13 37.02 0.45 -2.68 16 29 C -0.11 -3.20 4.86 30.58 0.15 -3.05 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.38 19.20 7.80 -92.71 -0.72 18.47 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.42 3.49 8.60 -92.71 -0.80 2.69 16 39 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.19 -0.48 8.07 -2.39 -0.02 -0.50 16 41 H 0.24 0.59 7.46 -2.91 -0.02 0.57 16 42 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.11 0.32 7.23 -2.39 -0.02 0.31 16 46 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -86.09 395.54 1.77 -84.33 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.54 Total: 22.32 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.22 Total: -8.59 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -4.90 Total: -127.73 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.05 Total: -18.43 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -86.09 1.77 -84.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981135611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.308 kcal (2) G-P(sol) polarization free energy of solvation -86.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds