Wall clock time and date at job start Tue Mar 31 2020 18:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47333 * 270.00032 * 3 2 1 5 5 H 1.48501 * 109.47331 * 30.00067 * 3 2 1 6 6 H 1.48507 * 109.47129 * 150.00191 * 3 2 1 7 7 C 1.38820 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99578 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99811 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47889 * 34.99403 * 10 9 7 12 12 C 1.53006 * 109.46960 * 274.99817 * 10 9 7 13 13 C 1.52998 * 109.47394 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47235 * 59.99808 * 13 12 10 15 15 C 1.53006 * 109.47086 * 300.00381 * 14 13 12 16 16 H 1.09001 * 109.47022 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.47051 * 299.99687 * 15 14 13 18 18 C 1.34775 * 120.00119 * 275.00160 * 17 15 14 19 19 O 1.21594 * 120.00218 * 359.97438 * 18 17 15 20 20 C 1.47523 * 120.00334 * 179.97438 * 18 17 15 21 21 C 1.36601 * 125.77195 * 180.23178 * 20 18 17 22 22 N 1.34815 * 106.83796 * 180.14285 * 21 20 18 23 23 C 1.46498 * 126.59337 * 179.90791 * 22 21 20 24 24 C 1.53006 * 109.46726 * 124.71438 * 23 22 21 25 25 C 1.53001 * 117.49866 * 243.62197 * 24 23 22 26 26 C 1.53000 * 117.49497 * 174.99789 * 24 23 22 27 27 N 1.40211 * 106.81050 * 359.65287 * 22 21 20 28 28 N 1.28765 * 108.36995 * 0.21940 * 27 22 21 29 29 C 1.52998 * 109.47394 * 59.99717 * 15 14 13 30 30 H 0.97004 * 119.99934 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00459 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47042 * 299.99872 * 12 10 9 33 33 H 1.08997 * 109.46824 * 60.00003 * 12 10 9 34 34 H 1.08996 * 109.47653 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47199 * 300.00297 * 13 12 10 36 36 H 1.08992 * 109.47709 * 180.02562 * 14 13 12 37 37 H 1.09002 * 109.47337 * 59.99912 * 14 13 12 38 38 H 0.97004 * 120.00123 * 94.99965 * 17 15 14 39 39 H 1.07994 * 126.57903 * 0.02562 * 21 20 18 40 40 H 1.08995 * 109.47463 * 4.71873 * 23 22 21 41 41 H 1.09000 * 109.47136 * 244.71439 * 23 22 21 42 42 H 1.08996 * 115.55031 * 29.33683 * 24 23 22 43 43 H 1.08996 * 117.49555 * 359.97438 * 25 24 23 44 44 H 1.08995 * 117.49577 * 145.02406 * 25 24 23 45 45 H 1.08998 * 117.49694 * 214.97781 * 26 24 23 46 46 H 1.08998 * 117.50118 * 359.97438 * 26 24 23 47 47 H 1.09003 * 109.47199 * 59.99703 * 29 15 14 48 48 H 1.09001 * 109.47206 * 180.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5506 0.5888 12 6 2.4218 -4.0356 -1.4376 13 6 3.1873 -5.3603 -1.4377 14 6 2.3107 -6.4560 -0.8278 15 6 1.9469 -6.0772 0.6093 16 1 1.3227 -6.8580 1.0439 17 7 3.1709 -5.9338 1.4013 18 6 3.7380 -7.0174 1.9675 19 8 3.2334 -8.1140 1.8214 20 6 4.9709 -6.8732 2.7646 21 6 5.6444 -7.8873 3.3843 22 7 6.7060 -7.3311 4.0017 23 6 7.7182 -8.0298 4.7976 24 6 9.1084 -7.7244 4.2362 25 6 9.9127 -8.8945 3.6660 26 6 10.3152 -8.2689 5.0031 27 7 6.6583 -5.9563 3.7306 28 7 5.6241 -5.7224 3.0000 29 6 1.1813 -4.7525 0.6094 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 1.5111 -4.1418 -2.0270 33 1 3.0467 -3.2552 -1.8719 34 1 3.4469 -5.6299 -2.4613 35 1 4.0981 -5.2537 -0.8483 36 1 2.8561 -7.3996 -0.8274 37 1 1.3999 -6.5627 -1.4170 38 1 3.5733 -5.0589 1.5182 39 1 5.3766 -8.9335 3.3818 40 1 7.5368 -9.1036 4.7545 41 1 7.6624 -7.6931 5.8328 42 1 9.2167 -6.7547 3.7504 43 1 9.4516 -9.8818 3.6913 44 1 10.5501 -8.6947 2.8048 45 1 11.2174 -7.6577 5.0214 46 1 10.1187 -8.8443 5.9078 47 1 0.2706 -4.8591 0.0200 48 1 0.9226 -4.4824 1.6332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981423087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:18 Heat of formation + Delta-G solvation = 86.258647 kcal Electronic energy + Delta-G solvation = -28354.643513 eV Core-core repulsion = 24447.367559 eV Total energy + Delta-G solvation = -3907.275954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38080 -39.85123 -38.28119 -37.75784 -34.54531 -34.31105 -32.93426 -31.24526 -31.03963 -29.57992 -28.21249 -27.75236 -24.08099 -23.57839 -23.04437 -22.84121 -21.96858 -21.53846 -20.97244 -20.43333 -18.74174 -18.41516 -17.15362 -16.73836 -16.39681 -15.80963 -15.44449 -15.33207 -14.92893 -14.70135 -14.57030 -14.33884 -14.11746 -13.84244 -13.51448 -13.39541 -12.97998 -12.61311 -12.38141 -12.20821 -12.11998 -12.00669 -11.82354 -11.67911 -11.41524 -11.14636 -10.94605 -10.85236 -10.82445 -10.69632 -10.48321 -10.32444 -10.14083 -10.10012 -10.03170 -9.67423 -9.47668 -9.44927 -8.87238 -8.76720 -6.90755 -5.71801 -3.00114 0.93877 1.63827 1.72658 3.09711 3.25538 3.32058 3.47640 3.53155 3.54689 3.73494 4.06404 4.13429 4.30244 4.35132 4.56876 4.61835 4.62959 4.76943 4.80758 5.03856 5.09230 5.16416 5.17862 5.25062 5.28685 5.49208 5.53368 5.55825 5.61611 5.66358 5.75993 5.84258 5.94405 6.03925 6.10127 6.13187 6.17126 6.32349 6.36721 6.58427 6.63566 6.70718 6.78772 7.02447 7.15938 7.57222 7.76042 7.86195 8.27177 8.46860 9.58176 10.15781 10.50451 11.50894 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.002589 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.449485 B =10811.378777 C =12282.503701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.044 0.956 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.086 0.914 17 N -0.700 5.700 18 C 0.604 3.396 19 O -0.548 6.548 20 C -0.099 4.099 21 C 0.091 3.909 22 N -0.360 5.360 23 C 0.155 3.845 24 C -0.177 4.177 25 C -0.176 4.176 26 C -0.165 4.165 27 N -0.061 5.061 28 N -0.199 5.199 29 C -0.134 4.134 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.412 0.588 39 H 0.203 0.797 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.483 -22.670 8.667 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.062 0.938 12 C -0.176 4.176 13 C -0.155 4.155 14 C -0.165 4.165 15 C 0.047 3.953 16 H 0.104 0.896 17 N -0.351 5.351 18 C 0.388 3.612 19 O -0.426 6.426 20 C -0.238 4.238 21 C -0.066 4.066 22 N -0.145 5.145 23 C 0.034 3.966 24 C -0.196 4.196 25 C -0.213 4.213 26 C -0.202 4.202 27 N -0.041 5.041 28 N -0.073 5.073 29 C -0.173 4.173 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.220 0.780 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.917 -21.934 8.828 29.073 hybrid contribution 0.049 0.400 -0.087 0.412 sum 16.966 -21.534 8.741 28.775 Atomic orbital electron populations 1.69658 1.05080 1.25549 1.57941 1.24729 0.95498 0.97639 1.03183 0.86218 0.78741 0.83986 0.77460 1.21825 1.21865 1.20703 1.19244 0.90999 0.84094 1.42305 0.91169 1.42409 1.05753 0.99712 1.88552 1.20170 0.94065 0.85933 0.92966 0.93799 1.22275 0.99711 0.95193 1.00459 1.21514 0.98608 0.95637 0.99712 1.21901 1.00608 0.98599 0.95424 1.21021 0.84890 0.98551 0.90840 0.89587 1.46033 1.27527 1.10555 1.50988 1.16751 0.81593 0.84686 0.78216 1.90777 1.63548 1.25763 1.62465 1.21559 1.02414 0.89531 1.10332 1.23343 0.88085 1.01138 0.94008 1.50476 1.19441 1.08366 1.36220 1.21583 0.84132 0.96479 0.94433 1.22553 0.90659 1.00492 1.05860 1.23147 1.03420 0.96968 0.97765 1.22995 0.97947 1.03441 0.95858 1.82022 1.15438 0.90415 1.16263 1.74726 1.01137 1.23603 1.07789 1.22134 0.99244 0.93532 1.02340 0.93603 0.78286 0.92579 0.92084 0.92886 0.92520 0.92059 0.91037 0.75078 0.78003 0.87646 0.87855 0.86059 0.88320 0.88264 0.88001 0.88205 0.90411 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -17.99 5.12 -53.42 -0.27 -18.26 16 10 C 0.18 3.48 2.60 -67.93 -0.18 3.30 16 11 H 0.04 0.88 6.44 -51.93 -0.33 0.55 16 12 C -0.14 -2.43 5.50 -26.73 -0.15 -2.58 16 13 C -0.12 -1.72 5.77 -26.73 -0.15 -1.87 16 14 C -0.13 -1.75 5.60 -26.73 -0.15 -1.89 16 15 C 0.15 2.19 2.78 -67.93 -0.19 2.00 16 16 H 0.09 1.24 7.57 -51.93 -0.39 0.84 16 17 N -0.70 -10.24 4.23 -54.85 -0.23 -10.47 16 18 C 0.60 8.80 7.78 -12.48 -0.10 8.70 16 19 O -0.55 -8.82 16.52 5.28 0.09 -8.73 16 20 C -0.10 -1.30 6.99 -83.55 -0.58 -1.88 16 21 C 0.09 0.87 11.27 -16.83 -0.19 0.68 16 22 N -0.36 -3.27 3.69 -61.06 -0.23 -3.50 16 23 C 0.15 0.76 6.82 -4.04 -0.03 0.73 16 24 C -0.18 -0.96 5.93 -90.62 -0.54 -1.50 16 25 C -0.18 -0.75 10.18 -26.73 -0.27 -1.03 16 26 C -0.16 -0.62 10.25 -26.73 -0.27 -0.89 16 27 N -0.06 -0.79 13.48 60.35 0.81 0.02 16 28 N -0.20 -2.89 12.04 32.85 0.40 -2.49 16 29 C -0.13 -2.19 5.08 -26.73 -0.14 -2.32 16 30 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.85 7.60 -51.93 -0.39 0.46 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 6.29 6.55 -40.82 -0.27 6.02 16 39 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.11 0.22 7.82 -51.93 -0.41 -0.18 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 0.93 7.94 -51.93 -0.41 0.52 16 43 H 0.10 0.31 8.03 -51.93 -0.42 -0.11 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -33.65 394.52 -8.53 -42.18 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -7.56 Total: 10.99 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -3.18 Total: -5.75 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 1.20 Total: -62.32 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.65 -8.53 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981423087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.437 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds