Wall clock time and date at job start Tue Mar 31 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47333 * 270.00032 * 3 2 1 5 5 H 1.48501 * 109.47331 * 30.00067 * 3 2 1 6 6 H 1.48507 * 109.47129 * 150.00191 * 3 2 1 7 7 C 1.38820 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99578 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99811 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47889 * 34.99403 * 10 9 7 12 12 C 1.53006 * 109.46960 * 274.99817 * 10 9 7 13 13 C 1.52998 * 109.47394 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47235 * 59.99808 * 13 12 10 15 15 C 1.53006 * 109.47086 * 300.00381 * 14 13 12 16 16 H 1.09001 * 109.47022 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.47051 * 299.99687 * 15 14 13 18 18 C 1.34775 * 120.00119 * 275.00160 * 17 15 14 19 19 O 1.21594 * 120.00218 * 359.97438 * 18 17 15 20 20 C 1.47523 * 120.00334 * 179.97438 * 18 17 15 21 21 C 1.36601 * 125.77195 * 180.23178 * 20 18 17 22 22 N 1.34815 * 106.83796 * 180.14285 * 21 20 18 23 23 C 1.46498 * 126.59337 * 179.90791 * 22 21 20 24 24 C 1.53006 * 109.46726 * 124.71438 * 23 22 21 25 25 C 1.53001 * 117.49866 * 243.62197 * 24 23 22 26 26 C 1.53000 * 117.49497 * 174.99789 * 24 23 22 27 27 N 1.40211 * 106.81050 * 359.65287 * 22 21 20 28 28 N 1.28765 * 108.36995 * 0.21940 * 27 22 21 29 29 C 1.52998 * 109.47394 * 59.99717 * 15 14 13 30 30 H 0.97004 * 119.99934 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00459 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47042 * 299.99872 * 12 10 9 33 33 H 1.08997 * 109.46824 * 60.00003 * 12 10 9 34 34 H 1.08996 * 109.47653 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47199 * 300.00297 * 13 12 10 36 36 H 1.08992 * 109.47709 * 180.02562 * 14 13 12 37 37 H 1.09002 * 109.47337 * 59.99912 * 14 13 12 38 38 H 0.97004 * 120.00123 * 94.99965 * 17 15 14 39 39 H 1.07994 * 126.57903 * 0.02562 * 21 20 18 40 40 H 1.08995 * 109.47463 * 4.71873 * 23 22 21 41 41 H 1.09000 * 109.47136 * 244.71439 * 23 22 21 42 42 H 1.08996 * 115.55031 * 29.33683 * 24 23 22 43 43 H 1.08996 * 117.49555 * 359.97438 * 25 24 23 44 44 H 1.08995 * 117.49577 * 145.02406 * 25 24 23 45 45 H 1.08998 * 117.49694 * 214.97781 * 26 24 23 46 46 H 1.08998 * 117.50118 * 359.97438 * 26 24 23 47 47 H 1.09003 * 109.47199 * 59.99703 * 29 15 14 48 48 H 1.09001 * 109.47206 * 180.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5506 0.5888 12 6 2.4218 -4.0356 -1.4376 13 6 3.1873 -5.3603 -1.4377 14 6 2.3107 -6.4560 -0.8278 15 6 1.9469 -6.0772 0.6093 16 1 1.3227 -6.8580 1.0439 17 7 3.1709 -5.9338 1.4013 18 6 3.7380 -7.0174 1.9675 19 8 3.2334 -8.1140 1.8214 20 6 4.9709 -6.8732 2.7646 21 6 5.6444 -7.8873 3.3843 22 7 6.7060 -7.3311 4.0017 23 6 7.7182 -8.0298 4.7976 24 6 9.1084 -7.7244 4.2362 25 6 9.9127 -8.8945 3.6660 26 6 10.3152 -8.2689 5.0031 27 7 6.6583 -5.9563 3.7306 28 7 5.6241 -5.7224 3.0000 29 6 1.1813 -4.7525 0.6094 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 1.5111 -4.1418 -2.0270 33 1 3.0467 -3.2552 -1.8719 34 1 3.4469 -5.6299 -2.4613 35 1 4.0981 -5.2537 -0.8483 36 1 2.8561 -7.3996 -0.8274 37 1 1.3999 -6.5627 -1.4170 38 1 3.5733 -5.0589 1.5182 39 1 5.3766 -8.9335 3.3818 40 1 7.5368 -9.1036 4.7545 41 1 7.6624 -7.6931 5.8328 42 1 9.2167 -6.7547 3.7504 43 1 9.4516 -9.8818 3.6913 44 1 10.5501 -8.6947 2.8048 45 1 11.2174 -7.6577 5.0214 46 1 10.1187 -8.8443 5.9078 47 1 0.2706 -4.8591 0.0200 48 1 0.9226 -4.4824 1.6332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981423087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:17 Heat of formation + Delta-G solvation = 64.003267 kcal Electronic energy + Delta-G solvation = -28355.608579 eV Core-core repulsion = 24447.367559 eV Total energy + Delta-G solvation = -3908.241020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.23403 -41.04921 -39.13739 -38.61056 -36.14232 -35.18415 -34.33764 -32.92479 -32.11361 -30.79474 -29.51960 -28.76903 -25.71022 -24.95805 -23.67873 -23.26961 -23.21600 -22.51585 -22.21661 -21.27739 -20.05474 -19.38413 -19.00188 -17.56834 -17.19012 -16.97528 -16.74970 -16.25783 -16.11273 -15.79531 -15.60288 -15.32887 -15.16540 -15.02129 -14.84966 -14.75704 -14.34527 -13.86147 -13.51548 -13.30328 -13.08620 -13.01583 -12.89663 -12.82446 -12.77568 -12.41874 -12.23414 -12.21494 -12.04252 -11.94252 -11.63762 -11.58981 -11.45181 -11.32809 -11.16060 -10.98638 -10.97335 -10.83230 -10.38040 -9.96348 -8.97233 -7.92186 -5.19538 0.16396 0.62966 1.09321 1.47266 1.48222 1.56788 2.17461 2.26488 2.57251 2.78313 3.20272 3.26389 3.40830 3.66150 3.75839 3.86203 3.90404 3.92220 3.95072 3.97789 4.05065 4.15471 4.32217 4.32755 4.38424 4.44293 4.54462 4.59120 4.68458 4.74427 4.77234 4.78272 4.85886 4.98371 4.99059 5.11106 5.13270 5.20623 5.22452 5.25747 5.38518 5.48228 5.49836 5.52775 5.56988 5.67697 6.30585 6.44687 6.90979 7.15037 7.36758 8.13383 8.36525 9.31196 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.002589 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.449485 B =10811.378777 C =12282.503701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.233 4.233 8 H 0.071 0.929 9 N -0.736 5.736 10 C 0.175 3.825 11 H 0.037 0.963 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.120 4.120 15 C 0.158 3.842 16 H 0.093 0.907 17 N -0.703 5.703 18 C 0.607 3.393 19 O -0.564 6.564 20 C -0.128 4.128 21 C 0.114 3.886 22 N -0.345 5.345 23 C 0.147 3.853 24 C -0.193 4.193 25 C -0.175 4.175 26 C -0.154 4.154 27 N -0.091 5.091 28 N -0.232 5.232 29 C -0.122 4.122 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.407 0.593 39 H 0.242 0.758 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.084 0.916 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.910 -25.416 9.355 32.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.055 0.945 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.158 4.158 15 C 0.054 3.946 16 H 0.111 0.889 17 N -0.354 5.354 18 C 0.392 3.608 19 O -0.443 6.443 20 C -0.268 4.268 21 C -0.044 4.044 22 N -0.129 5.129 23 C 0.028 3.972 24 C -0.212 4.212 25 C -0.212 4.212 26 C -0.191 4.191 27 N -0.071 5.071 28 N -0.105 5.105 29 C -0.161 4.161 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.244 0.756 39 H 0.258 0.742 40 H 0.162 0.838 41 H 0.135 0.865 42 H 0.109 0.891 43 H 0.135 0.865 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.139 0.861 47 H 0.103 0.897 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.413 -24.708 9.527 32.253 hybrid contribution -0.285 1.139 -0.247 1.200 sum 18.128 -23.569 9.280 31.149 Atomic orbital electron populations 1.69803 1.06417 1.25838 1.59903 1.25486 0.96355 1.00821 1.04199 0.85228 0.77748 0.80017 0.77352 1.21526 1.22240 1.19713 1.19565 0.91233 0.85333 1.40382 0.91073 1.42598 1.05439 1.00866 1.88619 1.20371 0.93884 0.84886 0.94173 0.94550 1.22091 0.99577 0.96370 0.98626 1.21413 0.98076 0.94032 1.00901 1.21862 1.01050 0.98185 0.94721 1.20955 0.84853 0.97199 0.91624 0.88856 1.46059 1.27551 1.10538 1.51240 1.16888 0.81830 0.84207 0.77871 1.90755 1.64230 1.26077 1.63231 1.21582 1.02763 0.90453 1.11992 1.23882 0.86870 1.01935 0.91755 1.50760 1.19665 1.07246 1.35270 1.22072 0.82617 0.98230 0.94278 1.22432 0.91775 0.99696 1.07267 1.23239 1.02910 0.97233 0.97784 1.23089 0.96757 1.02821 0.96432 1.81936 1.15392 0.92789 1.16963 1.74695 1.01988 1.24937 1.08863 1.21982 0.99157 0.93466 1.01452 0.94152 0.79486 0.92784 0.94386 0.91129 0.92944 0.91360 0.89612 0.75631 0.74193 0.83754 0.86520 0.89119 0.86466 0.89172 0.88373 0.86143 0.89703 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 2 C -0.08 -4.48 5.50 84.87 0.47 -4.01 16 3 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.23 -13.17 9.93 84.04 0.83 -12.33 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -37.33 5.12 -322.92 -1.65 -38.99 16 10 C 0.18 6.89 2.60 45.00 0.12 7.00 16 11 H 0.04 1.49 6.44 -2.38 -0.02 1.48 16 12 C -0.13 -4.50 5.50 30.60 0.17 -4.33 16 13 C -0.11 -2.98 5.77 30.59 0.18 -2.80 16 14 C -0.12 -3.05 5.60 30.60 0.17 -2.88 16 15 C 0.16 4.39 2.78 44.99 0.13 4.51 16 16 H 0.09 2.53 7.57 -2.39 -0.02 2.51 16 17 N -0.70 -20.26 4.23 -445.71 -1.88 -22.15 16 18 C 0.61 17.10 7.78 86.69 0.67 17.77 16 19 O -0.56 -17.13 16.52 -4.01 -0.07 -17.19 16 20 C -0.13 -3.24 6.99 40.82 0.29 -2.96 16 21 C 0.11 1.90 11.27 83.85 0.95 2.85 16 22 N -0.35 -5.63 3.69 -347.10 -1.28 -6.91 16 23 C 0.15 1.02 6.82 86.38 0.59 1.61 16 24 C -0.19 -1.80 5.93 -10.79 -0.06 -1.86 16 25 C -0.17 -1.12 10.18 30.60 0.31 -0.80 16 26 C -0.15 -0.81 10.25 30.60 0.31 -0.50 16 27 N -0.09 -2.34 13.48 37.02 0.50 -1.84 16 28 N -0.23 -6.80 12.04 -49.99 -0.60 -7.40 16 29 C -0.12 -3.95 5.08 30.59 0.16 -3.80 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.53 7.60 -2.39 -0.02 1.51 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.41 12.63 6.55 -92.71 -0.61 12.02 16 39 H 0.24 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.14 -0.09 7.82 -2.39 -0.02 -0.11 16 41 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.09 1.43 7.94 -2.39 -0.02 1.42 16 43 H 0.12 0.31 8.03 -2.39 -0.02 0.30 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -74.53 394.52 2.24 -72.29 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.35 Total: 35.09 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.27 Total: -2.54 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -4.64 Total: -137.08 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.07 Total: -17.19 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -74.53 2.24 -72.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981423087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.288 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds