Wall clock time and date at job start Tue Mar 31 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48503 * 109.47368 * 269.99827 * 3 2 1 5 5 H 1.48500 * 109.47462 * 29.99674 * 3 2 1 6 6 H 1.48498 * 109.47420 * 150.00288 * 3 2 1 7 7 C 1.38806 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00173 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46955 * 34.99431 * 10 9 7 12 12 C 1.53002 * 109.46688 * 274.99450 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 16 16 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 17 17 N 1.46506 * 109.46691 * 179.97438 * 15 14 13 18 18 C 1.34781 * 119.99773 * 85.00675 * 17 15 14 19 19 O 1.21595 * 119.99986 * 359.97438 * 18 17 15 20 20 C 1.47516 * 119.99935 * 179.97438 * 18 17 15 21 21 C 1.36601 * 125.77075 * 179.71050 * 20 18 17 22 22 N 1.34815 * 106.83907 * 179.89973 * 21 20 18 23 23 C 1.46501 * 126.59573 * 180.13803 * 22 21 20 24 24 C 1.52993 * 109.47409 * 125.23992 * 23 22 21 25 25 C 1.52993 * 117.50022 * 243.74508 * 24 23 22 26 26 C 1.53004 * 117.49706 * 175.08597 * 24 23 22 27 27 N 1.40213 * 106.81157 * 0.35670 * 22 21 20 28 28 N 1.28761 * 108.36654 * 359.77609 * 27 22 21 29 29 C 1.52996 * 109.47258 * 154.99816 * 10 9 7 30 30 H 0.97001 * 120.00197 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99819 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47070 * 60.00104 * 12 10 9 33 33 H 1.08996 * 109.47407 * 299.99704 * 12 10 9 34 34 H 1.09001 * 109.47502 * 300.00518 * 13 12 10 35 35 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 37 37 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 38 38 H 0.96996 * 120.00068 * 264.99808 * 17 15 14 39 39 H 1.07993 * 126.57789 * 0.04553 * 21 20 18 40 40 H 1.08994 * 109.46882 * 245.24868 * 23 22 21 41 41 H 1.09004 * 109.47023 * 5.23819 * 23 22 21 42 42 H 1.08998 * 115.54998 * 29.42394 * 24 23 22 43 43 H 1.08997 * 117.50242 * 0.02562 * 25 24 23 44 44 H 1.09008 * 117.49904 * 145.02607 * 25 24 23 45 45 H 1.09007 * 117.49637 * 214.98143 * 26 24 23 46 46 H 1.08999 * 117.49895 * 359.97438 * 26 24 23 47 47 H 1.09001 * 109.46993 * 300.00050 * 29 10 9 48 48 H 1.09000 * 109.47380 * 59.99156 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0101 -1.2021 0.0005 8 1 3.0901 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9683 -3.5502 0.5917 12 6 2.4229 -4.0362 -1.4350 13 6 3.1884 -5.3609 -1.4337 14 6 2.3112 -6.4563 -0.8240 15 6 1.9465 -6.0768 0.6125 16 1 2.8567 -5.9699 1.2025 17 7 1.1061 -7.1254 1.1962 18 6 1.6754 -8.2073 1.7637 19 8 2.8864 -8.3133 1.7908 20 6 0.8292 -9.2629 2.3518 21 6 1.2786 -10.4063 2.9490 22 7 0.1891 -11.0920 3.3494 23 6 0.1754 -12.3824 4.0428 24 6 -0.6307 -12.2574 5.3371 25 6 0.1148 -12.4663 6.6566 26 6 -0.8611 -13.5319 6.1517 27 7 -0.9285 -10.3350 2.9701 28 7 -0.5144 -9.2650 2.3855 29 6 1.1804 -4.7519 0.6111 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0481 -3.2561 -1.8692 33 1 1.5126 -4.1428 -2.0250 34 1 4.0987 -5.2540 -0.8438 35 1 3.4487 -5.6311 -2.4572 36 1 1.4010 -6.5633 -1.4140 37 1 2.8565 -7.4002 -0.8236 38 1 0.1401 -7.0410 1.1742 39 1 2.3090 -10.7028 3.0779 40 1 -0.2824 -13.1349 3.4007 41 1 1.1974 -12.6792 4.2784 42 1 -1.4311 -11.5177 5.3228 43 1 1.1798 -12.6923 6.6027 44 1 -0.1953 -11.8641 7.5107 45 1 -1.8130 -13.6304 6.6737 46 1 -0.4388 -14.4595 5.7653 47 1 0.9204 -4.4815 1.6346 48 1 0.2701 -4.8583 0.0212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981423088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:21 Heat of formation + Delta-G solvation = 82.777519 kcal Electronic energy + Delta-G solvation = -27674.279208 eV Core-core repulsion = 23766.852301 eV Total energy + Delta-G solvation = -3907.426907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47735 -39.73137 -38.32642 -37.79644 -34.73307 -34.42027 -33.24180 -31.31954 -31.05611 -29.42357 -28.27249 -27.64392 -24.13965 -23.59634 -23.10032 -22.91686 -21.90984 -21.61462 -20.93052 -20.17776 -19.42973 -18.37389 -17.11719 -16.72238 -16.45878 -16.17975 -15.66181 -15.11511 -14.86345 -14.70541 -14.66204 -14.34273 -13.99215 -13.82123 -13.66769 -13.44919 -13.09447 -12.68380 -12.63784 -12.29107 -12.17916 -12.09198 -12.01516 -11.55579 -11.20752 -10.95758 -10.92704 -10.88314 -10.83736 -10.66477 -10.56184 -10.34111 -10.29138 -10.14346 -10.10044 -9.69528 -9.58583 -9.53621 -8.91473 -8.81143 -6.91418 -5.72460 -3.00900 0.84763 1.53346 1.63308 3.03743 3.14847 3.23538 3.46699 3.51984 3.53498 3.66432 3.97261 4.07517 4.24458 4.29157 4.49109 4.54608 4.62008 4.70283 4.71778 4.99476 5.03956 5.08980 5.15197 5.24316 5.38672 5.44544 5.46831 5.53006 5.55719 5.67367 5.75033 5.81206 5.94177 6.01070 6.03271 6.08864 6.19756 6.36614 6.39395 6.57716 6.59872 6.68539 6.78868 7.02321 7.18207 7.46690 7.74595 7.75290 8.18931 8.46275 9.57347 10.15333 10.50133 11.50276 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020622 B = 0.001925 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.431159 B =14544.539968 C =15280.675812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.150 3.850 16 H 0.090 0.910 17 N -0.706 5.706 18 C 0.604 3.396 19 O -0.542 6.542 20 C -0.099 4.099 21 C 0.093 3.907 22 N -0.359 5.359 23 C 0.154 3.846 24 C -0.178 4.178 25 C -0.176 4.176 26 C -0.165 4.165 27 N -0.062 5.062 28 N -0.203 5.203 29 C -0.130 4.130 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.204 0.796 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 -30.754 9.037 32.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.108 0.892 17 N -0.355 5.355 18 C 0.387 3.613 19 O -0.418 6.418 20 C -0.238 4.238 21 C -0.064 4.064 22 N -0.144 5.144 23 C 0.034 3.966 24 C -0.196 4.196 25 C -0.213 4.213 26 C -0.202 4.202 27 N -0.043 5.043 28 N -0.077 5.077 29 C -0.169 4.169 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.243 0.757 39 H 0.221 0.779 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.395 -30.608 9.093 31.933 hybrid contribution 0.640 0.749 0.026 0.986 sum 1.036 -29.859 9.119 31.238 Atomic orbital electron populations 1.69662 1.05080 1.25570 1.57884 1.24734 0.95509 0.97648 1.03178 0.86205 0.78661 0.83957 0.77472 1.21789 1.21854 1.20782 1.19248 0.91021 0.84089 1.42381 0.91144 1.42404 1.05774 0.99692 1.88580 1.20100 0.94091 0.85531 0.92967 0.93340 1.22292 0.99731 0.95221 1.00491 1.21484 0.98496 0.95371 0.99920 1.21891 1.00200 0.98823 0.95383 1.21097 0.94391 0.85953 0.94013 0.89239 1.45972 1.11203 1.20394 1.57962 1.16748 0.86312 0.80710 0.77508 1.90804 1.13161 1.78337 1.59540 1.21561 0.90517 0.99469 1.12275 1.23377 0.94773 0.92136 0.96115 1.50460 1.05719 1.18053 1.40168 1.21598 1.02581 0.80139 0.92332 1.22544 1.03311 1.02905 0.90883 1.23164 0.98269 1.02722 0.97116 1.23008 1.01709 0.92803 1.02682 1.81987 1.06783 0.99424 1.16088 1.74668 1.10010 1.12647 1.10337 1.22109 0.99406 0.93205 1.02188 0.93580 0.78300 0.91919 0.92626 0.92155 0.92521 0.91950 0.92135 0.75744 0.77916 0.87853 0.87570 0.86095 0.88270 0.88220 0.87982 0.88186 0.91204 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.11 5.12 -53.43 -0.27 -18.38 16 10 C 0.18 3.63 2.77 -67.93 -0.19 3.44 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.58 16 12 C -0.14 -2.45 5.50 -26.73 -0.15 -2.59 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16 15 C 0.15 2.19 2.46 -67.90 -0.17 2.02 16 16 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 17 N -0.71 -9.49 5.07 -54.83 -0.28 -9.77 16 18 C 0.60 8.36 7.78 -12.48 -0.10 8.26 16 19 O -0.54 -8.67 16.53 5.28 0.09 -8.58 16 20 C -0.10 -1.18 6.99 -83.55 -0.58 -1.77 16 21 C 0.09 0.81 11.27 -16.83 -0.19 0.62 16 22 N -0.36 -2.90 3.69 -61.06 -0.23 -3.12 16 23 C 0.15 0.63 6.82 -4.04 -0.03 0.60 16 24 C -0.18 -0.83 5.93 -90.62 -0.54 -1.37 16 25 C -0.18 -0.67 10.18 -26.70 -0.27 -0.94 16 26 C -0.16 -0.51 10.25 -26.69 -0.27 -0.78 16 27 N -0.06 -0.72 13.48 60.35 0.81 0.10 16 28 N -0.20 -2.59 12.04 32.85 0.40 -2.20 16 29 C -0.13 -2.15 4.86 -26.71 -0.13 -2.28 16 30 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.41 5.08 8.29 -40.82 -0.34 4.74 16 39 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 0.15 7.82 -51.93 -0.41 -0.25 16 42 H 0.12 0.82 7.94 -51.93 -0.41 0.41 16 43 H 0.10 0.27 8.03 -51.93 -0.42 -0.14 16 44 H 0.10 0.42 8.14 -51.92 -0.42 -0.01 16 45 H 0.10 0.31 8.14 -51.92 -0.42 -0.12 16 46 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -33.74 398.96 -8.68 -42.42 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.75 Total: 9.31 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -3.16 Total: -5.73 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 1.16 Total: -61.01 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.74 -8.68 -42.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981423088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.200 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds