Wall clock time and date at job start Tue Mar 31 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48503 * 109.47368 * 269.99827 * 3 2 1 5 5 H 1.48500 * 109.47462 * 29.99674 * 3 2 1 6 6 H 1.48498 * 109.47420 * 150.00288 * 3 2 1 7 7 C 1.38806 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00173 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46955 * 34.99431 * 10 9 7 12 12 C 1.53002 * 109.46688 * 274.99450 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 16 16 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 17 17 N 1.46506 * 109.46691 * 179.97438 * 15 14 13 18 18 C 1.34781 * 119.99773 * 85.00675 * 17 15 14 19 19 O 1.21595 * 119.99986 * 359.97438 * 18 17 15 20 20 C 1.47516 * 119.99935 * 179.97438 * 18 17 15 21 21 C 1.36601 * 125.77075 * 179.71050 * 20 18 17 22 22 N 1.34815 * 106.83907 * 179.89973 * 21 20 18 23 23 C 1.46501 * 126.59573 * 180.13803 * 22 21 20 24 24 C 1.52993 * 109.47409 * 125.23992 * 23 22 21 25 25 C 1.52993 * 117.50022 * 243.74508 * 24 23 22 26 26 C 1.53004 * 117.49706 * 175.08597 * 24 23 22 27 27 N 1.40213 * 106.81157 * 0.35670 * 22 21 20 28 28 N 1.28761 * 108.36654 * 359.77609 * 27 22 21 29 29 C 1.52996 * 109.47258 * 154.99816 * 10 9 7 30 30 H 0.97001 * 120.00197 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99819 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47070 * 60.00104 * 12 10 9 33 33 H 1.08996 * 109.47407 * 299.99704 * 12 10 9 34 34 H 1.09001 * 109.47502 * 300.00518 * 13 12 10 35 35 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 37 37 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 38 38 H 0.96996 * 120.00068 * 264.99808 * 17 15 14 39 39 H 1.07993 * 126.57789 * 0.04553 * 21 20 18 40 40 H 1.08994 * 109.46882 * 245.24868 * 23 22 21 41 41 H 1.09004 * 109.47023 * 5.23819 * 23 22 21 42 42 H 1.08998 * 115.54998 * 29.42394 * 24 23 22 43 43 H 1.08997 * 117.50242 * 0.02562 * 25 24 23 44 44 H 1.09008 * 117.49904 * 145.02607 * 25 24 23 45 45 H 1.09007 * 117.49637 * 214.98143 * 26 24 23 46 46 H 1.08999 * 117.49895 * 359.97438 * 26 24 23 47 47 H 1.09001 * 109.46993 * 300.00050 * 29 10 9 48 48 H 1.09000 * 109.47380 * 59.99156 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0101 -1.2021 0.0005 8 1 3.0901 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9683 -3.5502 0.5917 12 6 2.4229 -4.0362 -1.4350 13 6 3.1884 -5.3609 -1.4337 14 6 2.3112 -6.4563 -0.8240 15 6 1.9465 -6.0768 0.6125 16 1 2.8567 -5.9699 1.2025 17 7 1.1061 -7.1254 1.1962 18 6 1.6754 -8.2073 1.7637 19 8 2.8864 -8.3133 1.7908 20 6 0.8292 -9.2629 2.3518 21 6 1.2786 -10.4063 2.9490 22 7 0.1891 -11.0920 3.3494 23 6 0.1754 -12.3824 4.0428 24 6 -0.6307 -12.2574 5.3371 25 6 0.1148 -12.4663 6.6566 26 6 -0.8611 -13.5319 6.1517 27 7 -0.9285 -10.3350 2.9701 28 7 -0.5144 -9.2650 2.3855 29 6 1.1804 -4.7519 0.6111 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0481 -3.2561 -1.8692 33 1 1.5126 -4.1428 -2.0250 34 1 4.0987 -5.2540 -0.8438 35 1 3.4487 -5.6311 -2.4572 36 1 1.4010 -6.5633 -1.4140 37 1 2.8565 -7.4002 -0.8236 38 1 0.1401 -7.0410 1.1742 39 1 2.3090 -10.7028 3.0779 40 1 -0.2824 -13.1349 3.4007 41 1 1.1974 -12.6792 4.2784 42 1 -1.4311 -11.5177 5.3228 43 1 1.1798 -12.6923 6.6027 44 1 -0.1953 -11.8641 7.5107 45 1 -1.8130 -13.6304 6.6737 46 1 -0.4388 -14.4595 5.7653 47 1 0.9204 -4.4815 1.6346 48 1 0.2701 -4.8583 0.0212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981423088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:21 Heat of formation + Delta-G solvation = 60.093615 kcal Electronic energy + Delta-G solvation = -27675.262856 eV Core-core repulsion = 23766.852301 eV Total energy + Delta-G solvation = -3908.410555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.24499 -40.88460 -39.19031 -38.61462 -36.23605 -35.22622 -34.67647 -32.93039 -32.13094 -30.63887 -29.46279 -28.70886 -25.71867 -24.97699 -23.69140 -23.27072 -23.15263 -22.56715 -21.86832 -21.21719 -20.70005 -19.40049 -18.87182 -17.58093 -17.34829 -17.19548 -16.53710 -16.19859 -16.04876 -15.75626 -15.48708 -15.36080 -15.19560 -15.06053 -14.95560 -14.66941 -14.39538 -14.16004 -13.55438 -13.38489 -13.32744 -12.90007 -12.83867 -12.79187 -12.42868 -12.27288 -12.23843 -12.14519 -12.01642 -11.95575 -11.64997 -11.62757 -11.54727 -11.36777 -11.32037 -11.02348 -10.97254 -10.85067 -10.39852 -10.00709 -8.98220 -7.91983 -5.20012 0.14767 0.60945 1.06993 1.48163 1.49581 1.57939 2.09031 2.23826 2.58168 2.77906 3.17476 3.25132 3.41271 3.64454 3.72638 3.84771 3.88688 3.91819 3.96752 4.04026 4.07224 4.14784 4.28000 4.33776 4.43342 4.45100 4.53562 4.56723 4.60143 4.69100 4.77724 4.78321 4.79453 4.99027 5.05164 5.12791 5.14004 5.19970 5.22216 5.25438 5.37939 5.45972 5.46647 5.52563 5.55468 5.68492 6.30327 6.43188 6.89759 7.13324 7.36390 8.12683 8.36155 9.31531 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020622 B = 0.001925 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.431159 B =14544.539968 C =15280.675812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.178 3.822 11 H 0.041 0.959 12 C -0.127 4.127 13 C -0.105 4.105 14 C -0.117 4.117 15 C 0.160 3.840 16 H 0.079 0.921 17 N -0.704 5.704 18 C 0.606 3.394 19 O -0.565 6.565 20 C -0.126 4.126 21 C 0.113 3.887 22 N -0.345 5.345 23 C 0.147 3.853 24 C -0.191 4.191 25 C -0.178 4.178 26 C -0.152 4.152 27 N -0.087 5.087 28 N -0.227 5.227 29 C -0.117 4.117 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.412 0.588 39 H 0.239 0.761 40 H 0.120 0.880 41 H 0.143 0.857 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.121 0.879 47 H 0.058 0.942 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 -33.387 9.276 34.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.376 5.376 10 C 0.069 3.931 11 H 0.059 0.941 12 C -0.167 4.167 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.055 3.945 16 H 0.097 0.903 17 N -0.353 5.353 18 C 0.391 3.609 19 O -0.444 6.444 20 C -0.266 4.266 21 C -0.045 4.045 22 N -0.129 5.129 23 C 0.028 3.972 24 C -0.211 4.211 25 C -0.215 4.215 26 C -0.190 4.190 27 N -0.068 5.068 28 N -0.100 5.100 29 C -0.156 4.156 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.248 0.752 39 H 0.255 0.745 40 H 0.137 0.863 41 H 0.160 0.840 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.107 0.893 45 H 0.117 0.883 46 H 0.139 0.861 47 H 0.077 0.923 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.026 -33.301 9.342 34.646 hybrid contribution 0.139 1.423 0.036 1.430 sum 2.164 -31.878 9.378 33.300 Atomic orbital electron populations 1.69817 1.06535 1.25889 1.59847 1.25528 0.96370 1.00968 1.04098 0.85176 0.77711 0.79744 0.77378 1.21470 1.22354 1.19519 1.19615 0.91406 0.85247 1.40532 0.90729 1.42598 1.05431 1.00878 1.88693 1.20316 0.93830 0.84549 0.94406 0.94141 1.22101 0.99618 0.96632 0.98375 1.21410 0.98092 0.93419 1.01407 1.21825 1.00441 0.98703 0.94552 1.20856 0.93645 0.85285 0.94676 0.90317 1.45879 1.11300 1.20176 1.57980 1.16933 0.86195 0.80810 0.76922 1.90781 1.14100 1.78941 1.60578 1.21472 0.90390 1.00413 1.14302 1.23869 0.96088 0.90673 0.93913 1.50733 1.04687 1.18563 1.38952 1.22073 1.04856 0.78452 0.91821 1.22439 1.03261 1.03563 0.91797 1.23249 0.99292 1.02851 0.96135 1.23100 1.01522 0.92916 1.01416 1.81912 1.08291 0.99759 1.16801 1.74639 1.10627 1.13575 1.11190 1.21904 0.99154 0.93307 1.01228 0.94153 0.79578 0.93775 0.93089 0.91824 0.90443 0.91259 0.91408 0.75211 0.74492 0.86256 0.83962 0.88930 0.86634 0.89259 0.88287 0.86125 0.92294 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.93 29.55 68.60 2.03 48.95 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.24 -13.28 9.93 84.03 0.83 -12.44 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -37.54 5.12 -322.94 -1.65 -39.20 16 10 C 0.18 7.07 2.77 44.99 0.12 7.20 16 11 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 12 C -0.13 -4.48 5.50 30.59 0.17 -4.31 16 13 C -0.10 -2.86 5.92 30.60 0.18 -2.68 16 14 C -0.12 -3.05 5.49 30.60 0.17 -2.88 16 15 C 0.16 4.57 2.46 45.01 0.11 4.68 16 16 H 0.08 2.46 7.58 -2.39 -0.02 2.44 16 17 N -0.70 -18.57 5.07 -445.63 -2.26 -20.83 16 18 C 0.61 16.26 7.78 86.69 0.67 16.94 16 19 O -0.57 -17.38 16.53 -4.02 -0.07 -17.44 16 20 C -0.13 -2.89 6.99 40.81 0.29 -2.60 16 21 C 0.11 1.70 11.27 83.85 0.95 2.65 16 22 N -0.35 -4.89 3.69 -347.11 -1.28 -6.17 16 23 C 0.15 0.76 6.82 86.38 0.59 1.35 16 24 C -0.19 -1.51 5.93 -10.80 -0.06 -1.57 16 25 C -0.18 -1.02 10.18 30.62 0.31 -0.70 16 26 C -0.15 -0.61 10.25 30.62 0.31 -0.30 16 27 N -0.09 -1.96 13.48 37.02 0.50 -1.46 16 28 N -0.23 -5.76 12.04 -50.00 -0.60 -6.36 16 29 C -0.12 -3.88 4.86 30.61 0.15 -3.73 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.41 10.21 8.29 -92.71 -0.77 9.45 16 39 H 0.24 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.14 -0.25 7.82 -2.38 -0.02 -0.26 16 42 H 0.09 1.28 7.94 -2.39 -0.02 1.27 16 43 H 0.12 0.27 8.03 -2.39 -0.02 0.26 16 44 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.12 0.00 8.14 -2.39 -0.02 -0.01 16 47 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -74.32 398.96 1.69 -72.63 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.51 Total: 32.23 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.26 Total: -2.47 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -5.02 Total: -133.91 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.07 Total: -17.44 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -74.32 1.69 -72.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981423088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.726 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds