Wall clock time and date at job start Tue Mar 31 2020 18:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99696 * 2 1 4 4 H 1.48496 * 109.47227 * 270.00312 * 3 2 1 5 5 H 1.48505 * 109.47018 * 30.00293 * 3 2 1 6 6 H 1.48492 * 109.47055 * 149.99770 * 3 2 1 7 7 C 1.38809 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99807 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99750 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00100 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46953 * 324.99712 * 10 9 7 12 12 C 1.52998 * 109.47147 * 84.99501 * 10 9 7 13 13 C 1.53007 * 109.47423 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46477 * 300.00262 * 13 12 10 15 15 C 1.53000 * 109.47797 * 60.00026 * 14 13 12 16 16 H 1.09000 * 109.46980 * 59.99014 * 15 14 13 17 17 N 1.46492 * 109.47360 * 179.97438 * 15 14 13 18 18 C 1.34778 * 120.00113 * 274.99590 * 17 15 14 19 19 O 1.21595 * 119.99630 * 0.02562 * 18 17 15 20 20 C 1.47522 * 120.00280 * 179.97438 * 18 17 15 21 21 C 1.36589 * 125.77161 * 179.97438 * 20 18 17 22 22 N 1.34817 * 106.83946 * 180.02562 * 21 20 18 23 23 C 1.46503 * 126.59595 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47116 * 125.00163 * 23 22 21 25 25 C 1.52997 * 117.49927 * 243.62102 * 24 23 22 26 26 C 1.53001 * 60.00156 * 252.51260 * 25 24 23 27 27 N 1.40212 * 106.81108 * 0.02562 * 22 21 20 28 28 N 1.28764 * 108.36638 * 359.97438 * 27 22 21 29 29 C 1.52998 * 109.47560 * 204.99751 * 10 9 7 30 30 H 0.97001 * 120.00550 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00517 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47320 * 60.00216 * 12 10 9 33 33 H 1.09003 * 109.47145 * 299.99908 * 12 10 9 34 34 H 1.08999 * 109.47066 * 179.97438 * 13 12 10 35 35 H 1.09005 * 109.46405 * 59.99969 * 13 12 10 36 36 H 1.08997 * 109.47385 * 299.98742 * 14 13 12 37 37 H 1.09007 * 109.46422 * 180.02562 * 14 13 12 38 38 H 0.97004 * 120.00086 * 94.99777 * 17 15 14 39 39 H 1.07995 * 126.58198 * 359.97438 * 21 20 18 40 40 H 1.08997 * 109.47393 * 245.00780 * 23 22 21 41 41 H 1.09005 * 109.46588 * 5.00277 * 23 22 21 42 42 H 1.08997 * 115.54965 * 29.33298 * 24 23 22 43 43 H 1.09001 * 117.50027 * 0.02562 * 25 24 23 44 44 H 1.08995 * 117.49703 * 145.02194 * 25 24 23 45 45 H 1.08996 * 117.49840 * 252.50734 * 26 25 24 46 46 H 1.09001 * 117.50043 * 107.49192 * 26 25 24 47 47 H 1.08997 * 109.47085 * 59.99582 * 29 10 9 48 48 H 1.09002 * 109.46956 * 299.99959 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4706 0.0000 11 1 3.5647 -3.2064 0.5891 12 6 4.2589 -2.9749 -1.4370 13 6 5.0235 -4.3002 -1.4371 14 6 6.4104 -4.0887 -0.8267 15 6 6.2638 -3.5845 0.6104 16 1 5.7159 -4.3200 1.1994 17 7 7.5918 -3.3825 1.1949 18 6 8.2432 -4.4175 1.7616 19 8 7.7286 -5.5189 1.7873 20 6 9.5807 -4.2143 2.3497 21 6 10.3427 -5.1750 2.9515 22 7 11.4837 -4.5766 3.3485 23 6 12.6074 -5.2115 4.0418 24 6 13.8964 -4.9658 3.2552 25 6 14.6132 -6.1865 2.6746 26 6 15.2072 -5.4510 3.8776 27 7 11.3882 -3.2299 2.9703 28 7 10.2552 -3.0522 2.3849 29 6 5.4992 -2.2587 0.6101 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3619 0.0004 32 1 4.8063 -2.2393 -2.0262 33 1 3.2707 -3.1260 -1.8717 34 1 5.1275 -4.6596 -2.4608 35 1 4.4755 -5.0357 -0.8480 36 1 6.9583 -3.3533 -1.4158 37 1 6.9553 -5.0328 -0.8271 38 1 8.0024 -2.5039 1.1741 39 1 10.0810 -6.2143 3.0845 40 1 12.7047 -4.7867 5.0408 41 1 12.4275 -6.2838 4.1190 42 1 13.9255 -4.0424 2.6768 43 1 14.1662 -7.1645 2.8527 44 1 15.1139 -6.0663 1.7139 45 1 16.0986 -4.8471 3.7084 46 1 15.1512 -5.9453 4.8475 47 1 5.3948 -1.8995 1.6339 48 1 6.0467 -1.5230 0.0210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981423089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:25 Heat of formation + Delta-G solvation = 86.898486 kcal Electronic energy + Delta-G solvation = -27742.616633 eV Core-core repulsion = 23835.368424 eV Total energy + Delta-G solvation = -3907.248209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52530 -39.80558 -38.37690 -37.90239 -34.84084 -34.49895 -33.30398 -31.39739 -31.24864 -29.54808 -28.48852 -27.94791 -24.17860 -23.39829 -23.13037 -22.95546 -22.00672 -21.63081 -20.89181 -20.22591 -19.58291 -18.48681 -17.47065 -16.84552 -16.53936 -16.21160 -15.70303 -15.08718 -15.03014 -14.77809 -14.56134 -14.48040 -14.11309 -13.92205 -13.67739 -13.49019 -13.19073 -12.75986 -12.63342 -12.33639 -12.22045 -12.21589 -12.19549 -11.61320 -11.25451 -11.22721 -10.99096 -10.96333 -10.94401 -10.81182 -10.60537 -10.40774 -10.30622 -10.28676 -10.01228 -9.75184 -9.60697 -9.54961 -8.98418 -8.85122 -7.23357 -5.73369 -3.08751 0.80390 1.48047 1.58988 2.99151 3.08573 3.18064 3.40625 3.43637 3.48394 3.62392 3.92519 4.03614 4.20193 4.25205 4.44567 4.50413 4.62463 4.66493 4.67227 4.88332 4.95542 5.04097 5.05757 5.19914 5.30777 5.40217 5.41776 5.46263 5.50070 5.56951 5.63871 5.68238 5.83309 5.86482 5.96674 5.98122 6.11392 6.26247 6.28484 6.42213 6.51190 6.58137 6.69156 6.93171 7.07463 7.39992 7.69292 8.03566 8.12776 8.45781 9.24471 9.97044 10.16928 11.44973 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.001996 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.130313 B =14025.579212 C =14745.534646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.188 3.812 11 H 0.058 0.942 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.150 3.850 16 H 0.092 0.908 17 N -0.707 5.707 18 C 0.604 3.396 19 O -0.540 6.540 20 C -0.099 4.099 21 C 0.094 3.906 22 N -0.359 5.359 23 C 0.154 3.846 24 C -0.178 4.178 25 C -0.176 4.176 26 C -0.164 4.164 27 N -0.062 5.062 28 N -0.204 5.204 29 C -0.134 4.134 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.407 0.593 39 H 0.205 0.795 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.623 -14.403 7.072 35.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.078 3.922 11 H 0.076 0.924 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.046 3.954 16 H 0.110 0.890 17 N -0.357 5.357 18 C 0.388 3.612 19 O -0.416 6.416 20 C -0.239 4.239 21 C -0.063 4.063 22 N -0.144 5.144 23 C 0.033 3.967 24 C -0.196 4.196 25 C -0.213 4.213 26 C -0.202 4.202 27 N -0.043 5.043 28 N -0.078 5.078 29 C -0.173 4.173 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.242 0.758 39 H 0.221 0.779 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 31.695 -13.895 7.134 35.335 hybrid contribution 0.466 0.715 0.029 0.854 sum 32.161 -13.180 7.163 35.488 Atomic orbital electron populations 1.69700 1.05094 1.25753 1.57704 1.24667 0.95218 0.97166 1.02152 0.86555 0.79228 0.85056 0.77727 1.21152 1.21842 1.20309 1.19081 0.80555 0.94714 1.42744 0.89137 1.42766 1.03991 1.01953 1.90316 1.20073 0.89397 0.89285 0.93413 0.92436 1.22256 1.00214 0.95288 0.99983 1.21479 0.94965 0.98711 1.00123 1.21900 0.98165 1.01024 0.95256 1.21073 0.81624 0.98566 0.94170 0.89020 1.45953 1.19342 1.12248 1.58118 1.16743 0.82334 0.84667 0.77493 1.90812 1.67261 1.24152 1.59394 1.21547 0.99819 0.90324 1.12180 1.23385 0.86140 1.00919 0.95877 1.50460 1.14085 1.09244 1.40564 1.21611 0.81676 0.98076 0.95327 1.22542 0.91816 1.00742 1.04539 1.23152 1.03690 0.95868 0.98569 1.22999 0.95850 1.03388 0.97948 1.81984 1.13456 0.92627 1.16214 1.74662 1.00213 1.22542 1.10361 1.22147 0.97396 0.95577 1.02171 0.93121 0.80702 0.92736 0.91391 0.92337 0.91931 0.91995 0.91998 0.75820 0.77875 0.87800 0.87526 0.86129 0.88256 0.88255 0.87980 0.88152 0.91114 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.26 27.74 -169.99 -4.71 17.55 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.24 -6.78 10.41 -15.06 -0.16 -6.93 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.54 4.92 -53.43 -0.26 -17.80 16 10 C 0.19 3.55 2.77 -67.93 -0.19 3.36 16 11 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 12 C -0.14 -2.35 5.50 -26.73 -0.15 -2.49 16 13 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 14 C -0.12 -1.66 5.49 -26.73 -0.15 -1.80 16 15 C 0.15 2.08 2.45 -67.91 -0.17 1.92 16 16 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 17 N -0.71 -9.03 5.07 -54.83 -0.28 -9.30 16 18 C 0.60 8.05 7.78 -12.48 -0.10 7.95 16 19 O -0.54 -8.39 16.52 5.28 0.09 -8.30 16 20 C -0.10 -1.14 6.99 -83.55 -0.58 -1.73 16 21 C 0.09 0.78 11.27 -16.84 -0.19 0.59 16 22 N -0.36 -2.77 3.69 -61.06 -0.23 -3.00 16 23 C 0.15 0.58 6.82 -4.04 -0.03 0.55 16 24 C -0.18 -0.75 5.93 -90.62 -0.54 -1.29 16 25 C -0.18 -0.58 10.18 -26.73 -0.27 -0.85 16 26 C -0.16 -0.45 10.25 -26.73 -0.27 -0.72 16 27 N -0.06 -0.69 13.48 60.35 0.81 0.12 16 28 N -0.20 -2.51 12.04 32.85 0.40 -2.11 16 29 C -0.13 -2.07 4.86 -26.71 -0.13 -2.20 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 31 H 0.36 8.32 5.66 -40.82 -0.23 8.09 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.41 4.75 8.29 -40.82 -0.34 4.41 16 39 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.12 7.82 -51.93 -0.41 -0.28 16 42 H 0.12 0.76 7.94 -51.93 -0.41 0.34 16 43 H 0.10 0.23 8.03 -51.93 -0.42 -0.19 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 395.84 15.07 5.97 5.97 Total: -1.00 -34.63 395.84 -8.32 -42.95 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.70 Total: 8.05 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -3.17 Total: -5.40 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 1.22 Total: -60.80 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.63 -8.32 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981423089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.847 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds