Wall clock time and date at job start Tue Mar 31 2020 18:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99696 * 2 1 4 4 H 1.48496 * 109.47227 * 270.00312 * 3 2 1 5 5 H 1.48505 * 109.47018 * 30.00293 * 3 2 1 6 6 H 1.48492 * 109.47055 * 149.99770 * 3 2 1 7 7 C 1.38809 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99807 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99750 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00100 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46953 * 324.99712 * 10 9 7 12 12 C 1.52998 * 109.47147 * 84.99501 * 10 9 7 13 13 C 1.53007 * 109.47423 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46477 * 300.00262 * 13 12 10 15 15 C 1.53000 * 109.47797 * 60.00026 * 14 13 12 16 16 H 1.09000 * 109.46980 * 59.99014 * 15 14 13 17 17 N 1.46492 * 109.47360 * 179.97438 * 15 14 13 18 18 C 1.34778 * 120.00113 * 274.99590 * 17 15 14 19 19 O 1.21595 * 119.99630 * 0.02562 * 18 17 15 20 20 C 1.47522 * 120.00280 * 179.97438 * 18 17 15 21 21 C 1.36589 * 125.77161 * 179.97438 * 20 18 17 22 22 N 1.34817 * 106.83946 * 180.02562 * 21 20 18 23 23 C 1.46503 * 126.59595 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47116 * 125.00163 * 23 22 21 25 25 C 1.52997 * 117.49927 * 243.62102 * 24 23 22 26 26 C 1.53001 * 60.00156 * 252.51260 * 25 24 23 27 27 N 1.40212 * 106.81108 * 0.02562 * 22 21 20 28 28 N 1.28764 * 108.36638 * 359.97438 * 27 22 21 29 29 C 1.52998 * 109.47560 * 204.99751 * 10 9 7 30 30 H 0.97001 * 120.00550 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00517 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47320 * 60.00216 * 12 10 9 33 33 H 1.09003 * 109.47145 * 299.99908 * 12 10 9 34 34 H 1.08999 * 109.47066 * 179.97438 * 13 12 10 35 35 H 1.09005 * 109.46405 * 59.99969 * 13 12 10 36 36 H 1.08997 * 109.47385 * 299.98742 * 14 13 12 37 37 H 1.09007 * 109.46422 * 180.02562 * 14 13 12 38 38 H 0.97004 * 120.00086 * 94.99777 * 17 15 14 39 39 H 1.07995 * 126.58198 * 359.97438 * 21 20 18 40 40 H 1.08997 * 109.47393 * 245.00780 * 23 22 21 41 41 H 1.09005 * 109.46588 * 5.00277 * 23 22 21 42 42 H 1.08997 * 115.54965 * 29.33298 * 24 23 22 43 43 H 1.09001 * 117.50027 * 0.02562 * 25 24 23 44 44 H 1.08995 * 117.49703 * 145.02194 * 25 24 23 45 45 H 1.08996 * 117.49840 * 252.50734 * 26 25 24 46 46 H 1.09001 * 117.50043 * 107.49192 * 26 25 24 47 47 H 1.08997 * 109.47085 * 59.99582 * 29 10 9 48 48 H 1.09002 * 109.46956 * 299.99959 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4706 0.0000 11 1 3.5647 -3.2064 0.5891 12 6 4.2589 -2.9749 -1.4370 13 6 5.0235 -4.3002 -1.4371 14 6 6.4104 -4.0887 -0.8267 15 6 6.2638 -3.5845 0.6104 16 1 5.7159 -4.3200 1.1994 17 7 7.5918 -3.3825 1.1949 18 6 8.2432 -4.4175 1.7616 19 8 7.7286 -5.5189 1.7873 20 6 9.5807 -4.2143 2.3497 21 6 10.3427 -5.1750 2.9515 22 7 11.4837 -4.5766 3.3485 23 6 12.6074 -5.2115 4.0418 24 6 13.8964 -4.9658 3.2552 25 6 14.6132 -6.1865 2.6746 26 6 15.2072 -5.4510 3.8776 27 7 11.3882 -3.2299 2.9703 28 7 10.2552 -3.0522 2.3849 29 6 5.4992 -2.2587 0.6101 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3619 0.0004 32 1 4.8063 -2.2393 -2.0262 33 1 3.2707 -3.1260 -1.8717 34 1 5.1275 -4.6596 -2.4608 35 1 4.4755 -5.0357 -0.8480 36 1 6.9583 -3.3533 -1.4158 37 1 6.9553 -5.0328 -0.8271 38 1 8.0024 -2.5039 1.1741 39 1 10.0810 -6.2143 3.0845 40 1 12.7047 -4.7867 5.0408 41 1 12.4275 -6.2838 4.1190 42 1 13.9255 -4.0424 2.6768 43 1 14.1662 -7.1645 2.8527 44 1 15.1139 -6.0663 1.7139 45 1 16.0986 -4.8471 3.7084 46 1 15.1512 -5.9453 4.8475 47 1 5.3948 -1.8995 1.6339 48 1 6.0467 -1.5230 0.0210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981423089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:24 Heat of formation + Delta-G solvation = 62.892130 kcal Electronic energy + Delta-G solvation = -27743.657626 eV Core-core repulsion = 23835.368424 eV Total energy + Delta-G solvation = -3908.289202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.24967 -40.90363 -39.24835 -38.62186 -36.34143 -35.23591 -34.68690 -33.25319 -32.14082 -30.75904 -29.77431 -28.73217 -25.47030 -24.93185 -23.69745 -23.27049 -23.19423 -22.52715 -21.85780 -21.24143 -20.85024 -19.69895 -19.02103 -17.60242 -17.35115 -17.18004 -16.53978 -16.30860 -15.98652 -15.86166 -15.46530 -15.38159 -15.18990 -14.99799 -14.84798 -14.84475 -14.48141 -14.32118 -13.72548 -13.48373 -13.33172 -13.00720 -12.88392 -12.83549 -12.43163 -12.38445 -12.27123 -12.17002 -11.97415 -11.80225 -11.69046 -11.64613 -11.56518 -11.42273 -11.32397 -11.04520 -10.97893 -10.89254 -10.40477 -10.01481 -9.28863 -7.99764 -5.32946 0.14290 0.60598 1.06104 1.39544 1.42803 1.49989 2.07847 2.23486 2.50656 2.77744 3.16830 3.24767 3.31673 3.46719 3.71177 3.84059 3.86271 3.91260 3.96301 4.03648 4.03890 4.14024 4.16464 4.29784 4.39135 4.43846 4.50431 4.55831 4.58101 4.66410 4.76676 4.77797 4.78746 4.98961 5.00309 5.12544 5.13342 5.17684 5.22149 5.22670 5.37153 5.44484 5.45560 5.51739 5.63984 5.80806 6.24319 6.42744 6.89377 7.10663 7.13547 7.86742 8.06562 9.21822 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.001996 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.130313 B =14025.579212 C =14745.534646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.250 1.250 7 C -0.227 4.227 8 H 0.055 0.945 9 N -0.751 5.751 10 C 0.181 3.819 11 H 0.040 0.960 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.077 0.923 17 N -0.703 5.703 18 C 0.606 3.394 19 O -0.566 6.566 20 C -0.125 4.125 21 C 0.112 3.888 22 N -0.345 5.345 23 C 0.146 3.854 24 C -0.190 4.190 25 C -0.177 4.177 26 C -0.154 4.154 27 N -0.087 5.087 28 N -0.226 5.226 29 C -0.121 4.121 30 H 0.257 0.743 31 H 0.366 0.634 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.238 0.762 40 H 0.118 0.882 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.119 0.881 47 H 0.066 0.934 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.100 -15.256 7.693 39.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.358 4.358 8 H 0.073 0.927 9 N -0.393 5.393 10 C 0.072 3.928 11 H 0.058 0.942 12 C -0.169 4.169 13 C -0.144 4.144 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.095 0.905 17 N -0.352 5.352 18 C 0.391 3.609 19 O -0.444 6.444 20 C -0.265 4.265 21 C -0.046 4.046 22 N -0.129 5.129 23 C 0.027 3.973 24 C -0.209 4.209 25 C -0.214 4.214 26 C -0.191 4.191 27 N -0.067 5.067 28 N -0.099 5.099 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.199 0.801 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.249 0.751 39 H 0.254 0.746 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.112 0.888 43 H 0.133 0.867 44 H 0.109 0.891 45 H 0.118 0.882 46 H 0.137 0.863 47 H 0.084 0.916 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 35.269 -14.761 7.763 39.013 hybrid contribution -0.552 0.825 -0.121 1.000 sum 34.717 -13.936 7.642 38.182 Atomic orbital electron populations 1.69889 1.07156 1.26552 1.60021 1.25497 0.96097 1.01228 1.02903 0.85405 0.78698 0.79614 0.78044 1.20491 1.22543 1.17461 1.19021 0.82655 0.93340 1.40751 0.92662 1.42754 1.02386 1.03871 1.90329 1.20281 0.90722 0.87063 0.94691 0.94229 1.22088 0.99376 0.97239 0.98168 1.21407 0.94963 0.96649 1.01430 1.21825 0.97521 1.01543 0.94597 1.20842 0.82030 0.97097 0.94658 0.90512 1.45834 1.18729 1.12676 1.58005 1.16933 0.82834 0.84168 0.76950 1.90792 1.68100 1.25021 1.60505 1.21456 0.99614 0.91308 1.14114 1.23867 0.85364 1.01642 0.93768 1.50722 1.14653 1.08190 1.39375 1.22070 0.80071 0.99899 0.95227 1.22431 0.92948 1.00192 1.05369 1.23237 1.03451 0.96132 0.98539 1.23089 0.94755 1.02709 0.98596 1.81911 1.13208 0.94636 1.16973 1.74627 1.00776 1.23344 1.11153 1.21955 0.95377 0.96911 1.01764 0.93469 0.80120 0.92025 0.94162 0.90422 0.92263 0.90770 0.91602 0.75067 0.74615 0.86441 0.84026 0.88768 0.86695 0.89081 0.88243 0.86302 0.91572 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.07 13.97 21.65 0.30 -63.77 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.95 46.03 27.74 68.60 1.90 47.93 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 7 C -0.23 -13.04 10.41 84.03 0.87 -12.17 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 9 N -0.75 -34.96 4.92 -322.95 -1.59 -36.55 16 10 C 0.18 6.79 2.77 44.99 0.12 6.91 16 11 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 12 C -0.13 -4.33 5.50 30.60 0.17 -4.16 16 13 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 14 C -0.12 -2.84 5.49 30.59 0.17 -2.67 16 15 C 0.16 4.19 2.45 45.01 0.11 4.31 16 16 H 0.08 2.30 7.58 -2.39 -0.02 2.28 16 17 N -0.70 -16.96 5.07 -445.65 -2.26 -19.22 16 18 C 0.61 15.37 7.78 86.69 0.67 16.04 16 19 O -0.57 -16.86 16.52 -4.01 -0.07 -16.93 16 20 C -0.12 -2.70 6.99 40.81 0.29 -2.41 16 21 C 0.11 1.59 11.27 83.85 0.95 2.53 16 22 N -0.35 -4.57 3.69 -347.10 -1.28 -5.85 16 23 C 0.15 0.67 6.82 86.38 0.59 1.25 16 24 C -0.19 -1.28 5.93 -10.79 -0.06 -1.34 16 25 C -0.18 -0.78 10.18 30.59 0.31 -0.47 16 26 C -0.15 -0.49 10.25 30.60 0.31 -0.18 16 27 N -0.09 -1.84 13.48 37.02 0.50 -1.34 16 28 N -0.23 -5.35 12.04 -50.00 -0.60 -5.95 16 29 C -0.12 -3.58 4.86 30.61 0.15 -3.43 16 30 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.37 16.23 5.66 -92.71 -0.52 15.71 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.41 9.02 8.29 -92.70 -0.77 8.26 16 39 H 0.24 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.14 -0.31 7.82 -2.38 -0.02 -0.33 16 42 H 0.09 1.16 7.94 -2.39 -0.02 1.14 16 43 H 0.11 0.15 8.03 -2.39 -0.02 0.13 16 44 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -77.58 395.84 1.82 -75.76 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.38 Total: 27.82 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.30 Total: -1.89 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -4.93 Total: -132.68 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.07 Total: -16.93 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Total: -77.58 1.82 -75.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981423089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.647 kcal (2) G-P(sol) polarization free energy of solvation -77.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds