Wall clock time and date at job start Tue Mar 31 2020 17:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99683 * 2 1 4 4 H 1.48494 * 109.46995 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47075 * 30.00078 * 3 2 1 6 6 H 1.48502 * 109.46886 * 149.99730 * 3 2 1 7 7 C 1.38810 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00433 * 194.63819 * 7 2 1 9 9 N 1.36938 * 119.99808 * 14.64748 * 7 2 1 10 10 C 1.43470 * 118.94182 * 204.96472 * 9 7 2 11 11 C 1.53797 * 107.96241 * 273.62819 * 10 9 7 12 12 C 1.47145 * 111.83853 * 281.67095 * 11 10 9 13 13 N 1.48216 * 110.34391 * 58.29487 * 12 11 10 14 14 C 1.34775 * 119.96623 * 102.46427 * 13 12 11 15 15 O 1.21274 * 120.00596 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99548 * 180.02562 * 14 13 12 17 17 N 1.46497 * 109.46776 * 180.02562 * 16 14 13 18 18 N 1.29107 * 126.01000 * 269.99755 * 17 16 14 19 19 N 1.29017 * 110.26447 * 179.97438 * 18 17 16 20 20 C 1.32914 * 108.63361 * 359.97438 * 19 18 17 21 21 C 1.34406 * 126.00765 * 90.00255 * 17 16 14 22 22 C 1.50530 * 129.25375 * 0.14474 * 21 17 16 23 23 C 1.53435 * 108.32186 * 163.54323 * 22 21 17 24 24 C 1.53106 * 109.55256 * 49.72154 * 23 22 21 25 25 C 1.50597 * 129.16155 * 180.21813 * 20 19 18 26 26 C 1.43619 * 120.05941 * 282.74044 * 13 12 11 27 27 C 1.48865 * 118.94116 * 24.93870 * 9 7 2 28 28 H 0.96994 * 120.00552 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.76458 * 154.00892 * 10 9 7 30 30 H 1.08999 * 109.80513 * 33.26627 * 10 9 7 31 31 H 1.08996 * 109.00485 * 161.06454 * 11 10 9 32 32 H 1.09000 * 108.94630 * 42.23186 * 11 10 9 33 33 H 1.08998 * 109.32253 * 298.03359 * 12 11 10 34 34 H 1.08996 * 109.17773 * 178.47331 * 12 11 10 35 35 H 1.08992 * 109.47117 * 59.99839 * 16 14 13 36 36 H 1.08999 * 109.46824 * 299.99706 * 16 14 13 37 37 H 1.08995 * 109.69604 * 283.25469 * 22 21 17 38 38 H 1.09001 * 109.69090 * 43.84032 * 22 21 17 39 39 H 1.09007 * 109.45704 * 169.74031 * 23 22 21 40 40 H 1.09001 * 109.46253 * 289.71285 * 23 22 21 41 41 H 1.08999 * 109.45825 * 49.96601 * 24 23 22 42 42 H 1.09001 * 109.45424 * 169.92133 * 24 23 22 43 43 H 1.08997 * 109.68879 * 283.08353 * 25 20 19 44 44 H 1.08994 * 109.69208 * 43.66164 * 25 20 19 45 45 H 1.08997 * 108.87461 * 211.19476 * 26 13 12 46 46 H 1.09001 * 108.87503 * 329.63678 * 26 13 12 47 47 H 1.08994 * 109.48111 * 260.61130 * 27 9 7 48 48 H 1.08998 * 109.47572 * 20.63024 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0640 -1.2171 0.2369 9 7 1.3591 -2.3689 -0.2988 10 6 1.8826 -3.6055 0.2063 11 6 2.9395 -4.1145 -0.7883 12 6 2.3237 -4.7470 -1.9655 13 7 1.4280 -3.7888 -2.6558 14 6 1.8375 -3.1787 -3.7857 15 8 2.9381 -3.4141 -4.2373 16 6 0.9276 -2.2039 -4.4878 17 7 1.5985 -1.6823 -5.6811 18 7 2.3460 -0.6310 -5.7332 19 7 2.7811 -0.4510 -6.9344 20 6 2.3042 -1.4206 -7.7084 21 6 1.5440 -2.2142 -6.9142 22 6 0.8088 -3.4377 -7.3922 23 6 0.7271 -3.3839 -8.9234 24 6 2.1168 -3.1020 -9.5011 25 6 2.5234 -1.6578 -9.1794 26 6 0.1266 -3.5055 -2.1186 27 6 0.1303 -2.3134 -1.1374 28 1 -0.4850 0.8399 -0.0004 29 1 1.0791 -4.3364 0.2965 30 1 2.3424 -3.4412 1.1808 31 1 3.5771 -4.8426 -0.2869 32 1 3.5509 -3.2738 -1.1162 33 1 1.7466 -5.6154 -1.6479 34 1 3.1079 -5.0663 -2.6518 35 1 0.6894 -1.3801 -3.8151 36 1 0.0084 -2.7112 -4.7807 37 1 1.3476 -4.3337 -7.0843 38 1 -0.1965 -3.4500 -6.9710 39 1 0.3638 -4.3395 -9.3015 40 1 0.0420 -2.5907 -9.2230 41 1 2.8391 -3.7897 -9.0613 42 1 2.0955 -3.2404 -10.5820 43 1 1.9116 -0.9658 -9.7581 44 1 3.5756 -1.5101 -9.4224 45 1 -0.5522 -3.2777 -2.9404 46 1 -0.2393 -4.3894 -1.5962 47 1 -0.7498 -2.3651 -0.4965 48 1 0.1160 -1.3797 -1.6998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981974148.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:59 Heat of formation + Delta-G solvation = 90.661023 kcal Electronic energy + Delta-G solvation = -30521.136349 eV Core-core repulsion = 26614.051296 eV Total energy + Delta-G solvation = -3907.085053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.22984 -39.98253 -37.29324 -37.08098 -34.69384 -34.41494 -32.91391 -31.01488 -30.61336 -30.06486 -28.57485 -27.56639 -25.48181 -24.18930 -23.80395 -22.76629 -22.60402 -21.05114 -19.87289 -19.64585 -18.91014 -17.63862 -17.14480 -16.49746 -16.03066 -15.79263 -15.41037 -14.93841 -14.65434 -14.14288 -14.04581 -13.93413 -13.91876 -13.83037 -13.63851 -13.36988 -13.05174 -12.73489 -12.42037 -12.32123 -12.21460 -11.94191 -11.49757 -11.41906 -11.24879 -11.15066 -11.09382 -11.05063 -10.80310 -10.61601 -10.39172 -10.32404 -10.30838 -10.22715 -9.92981 -9.78417 -9.42126 -8.67223 -8.55177 -8.29508 -6.79711 -5.86675 -3.28665 1.70687 2.34135 2.69380 2.75348 3.31570 3.39615 3.45990 3.50092 4.16086 4.42826 4.46635 4.51371 4.59639 4.64950 4.80228 4.89077 5.04794 5.12853 5.22962 5.25548 5.32291 5.35264 5.40932 5.47907 5.52514 5.62274 5.62892 5.71570 5.79237 5.80766 5.87135 5.97185 5.98636 6.08582 6.11621 6.12915 6.32854 6.38471 6.40380 6.64884 6.72958 6.75062 6.94222 7.18839 7.31325 7.65659 7.76087 8.28809 8.36393 8.75714 9.13405 9.80246 10.24007 11.21482 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.004118 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.739812 B = 6797.153434 C = 7947.667210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.007 3.993 3 Si 0.897 3.103 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.173 4.173 12 C 0.133 3.867 13 N -0.576 5.576 14 C 0.511 3.489 15 O -0.536 6.536 16 C 0.094 3.906 17 N -0.261 5.261 18 N -0.073 5.073 19 N -0.266 5.266 20 C -0.027 4.027 21 C -0.014 4.014 22 C -0.046 4.046 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.029 4.029 26 C 0.072 3.928 27 C 0.162 3.838 28 H 0.254 0.746 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 -11.951 -14.454 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.214 4.214 12 C 0.012 3.988 13 N -0.308 5.308 14 C 0.296 3.704 15 O -0.413 6.413 16 C -0.031 4.031 17 N -0.052 5.052 18 N -0.051 5.051 19 N -0.131 5.131 20 C -0.166 4.166 21 C -0.148 4.148 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.158 4.158 25 C -0.069 4.069 26 C -0.053 4.053 27 C 0.036 3.964 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.980 -10.755 -13.801 17.749 hybrid contribution -0.107 0.173 -0.051 0.210 sum -3.087 -10.582 -13.852 17.702 Atomic orbital electron populations 1.69983 1.05090 1.25553 1.54905 1.24928 0.95324 0.98215 1.00607 0.86367 0.79180 0.83676 0.78132 1.21002 1.21705 1.20454 1.19190 0.92200 0.84748 1.42246 0.91692 1.43642 1.28944 1.02127 1.56530 1.20286 0.93626 0.88296 0.94360 1.21899 1.00966 1.00884 0.97628 1.20601 0.93479 0.90164 0.94605 1.47331 1.17375 1.42721 1.23327 1.20110 0.87441 0.81132 0.81692 1.90729 1.20963 1.63126 1.66516 1.22015 0.94989 1.00491 0.85649 1.46361 1.32661 1.18529 1.07644 1.78731 1.07402 1.03773 1.15199 1.74809 1.19744 1.22009 0.96505 1.21569 1.01559 0.95316 0.98186 1.21704 1.06255 1.01438 0.85371 1.20175 0.98932 0.92785 0.96586 1.21563 0.97834 1.02466 0.93181 1.21644 0.96967 0.96227 1.00952 1.19903 1.02528 0.96791 0.87636 1.22275 0.82674 1.01856 0.98525 1.21876 0.89362 0.94273 0.90923 0.93604 0.94771 0.93446 0.92383 0.91228 0.91653 0.90435 0.83864 0.85596 0.89725 0.90384 0.90663 0.91204 0.91347 0.90769 0.90245 0.90019 0.91812 0.91230 0.93516 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.83 10.90 55.49 0.60 -24.23 16 2 C 0.01 0.20 4.95 -17.43 -0.09 0.11 16 3 Si 0.90 22.14 29.58 -169.99 -5.03 17.11 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.73 9.27 -15.06 -0.14 -6.87 16 8 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 9 N -0.59 -13.45 2.54 -172.29 -0.44 -13.89 16 10 C 0.16 3.10 5.63 -5.23 -0.03 3.07 16 11 C -0.17 -2.97 5.64 -29.13 -0.16 -3.14 16 12 C 0.13 2.04 5.70 -5.91 -0.03 2.01 16 13 N -0.58 -9.33 2.47 -176.96 -0.44 -9.76 16 14 C 0.51 9.07 7.74 -10.98 -0.09 8.99 16 15 O -0.54 -11.45 15.86 5.56 0.09 -11.36 16 16 C 0.09 1.43 5.27 -5.19 -0.03 1.41 16 17 N -0.26 -4.55 2.82 -58.43 -0.16 -4.71 16 18 N -0.07 -1.53 13.19 60.35 0.80 -0.74 16 19 N -0.27 -5.23 12.40 33.16 0.41 -4.82 16 20 C -0.03 -0.42 7.11 -83.12 -0.59 -1.01 16 21 C -0.01 -0.21 6.76 -82.49 -0.56 -0.76 16 22 C -0.05 -0.46 5.97 -27.74 -0.17 -0.62 16 23 C -0.11 -0.86 5.90 -26.45 -0.16 -1.02 16 24 C -0.12 -0.99 5.90 -26.44 -0.16 -1.15 16 25 C -0.03 -0.32 6.30 -27.70 -0.17 -0.50 16 26 C 0.07 1.07 5.01 -4.84 -0.02 1.05 16 27 C 0.16 3.28 5.17 -2.00 -0.01 3.27 16 28 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.03 0.58 7.58 -51.93 -0.39 0.19 16 30 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.48 7.91 -51.93 -0.41 1.06 16 33 H 0.07 0.82 8.06 -51.93 -0.42 0.41 16 34 H 0.08 1.25 7.12 -51.93 -0.37 0.88 16 35 H 0.14 2.38 7.31 -51.93 -0.38 2.00 16 36 H 0.13 1.33 6.94 -51.93 -0.36 0.97 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.63 7.87 -51.93 -0.41 0.23 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.75 6.38 -51.93 -0.33 0.42 16 46 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 47 H 0.05 1.02 8.00 -51.93 -0.42 0.60 16 48 H 0.08 1.75 5.72 -51.93 -0.30 1.45 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -34.45 373.31 -8.47 -42.92 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.53 Total: -1.00 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.40 Total: 4.84 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.77 Total: -58.15 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.45 -8.47 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981974148.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.583 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds