Wall clock time and date at job start Tue Mar 31 2020 17:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99683 * 2 1 4 4 H 1.48494 * 109.46995 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47075 * 30.00078 * 3 2 1 6 6 H 1.48502 * 109.46886 * 149.99730 * 3 2 1 7 7 C 1.38810 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00433 * 194.63819 * 7 2 1 9 9 N 1.36938 * 119.99808 * 14.64748 * 7 2 1 10 10 C 1.43470 * 118.94182 * 204.96472 * 9 7 2 11 11 C 1.53797 * 107.96241 * 273.62819 * 10 9 7 12 12 C 1.47145 * 111.83853 * 281.67095 * 11 10 9 13 13 N 1.48216 * 110.34391 * 58.29487 * 12 11 10 14 14 C 1.34775 * 119.96623 * 102.46427 * 13 12 11 15 15 O 1.21274 * 120.00596 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99548 * 180.02562 * 14 13 12 17 17 N 1.46497 * 109.46776 * 180.02562 * 16 14 13 18 18 N 1.29107 * 126.01000 * 269.99755 * 17 16 14 19 19 N 1.29017 * 110.26447 * 179.97438 * 18 17 16 20 20 C 1.32914 * 108.63361 * 359.97438 * 19 18 17 21 21 C 1.34406 * 126.00765 * 90.00255 * 17 16 14 22 22 C 1.50530 * 129.25375 * 0.14474 * 21 17 16 23 23 C 1.53435 * 108.32186 * 163.54323 * 22 21 17 24 24 C 1.53106 * 109.55256 * 49.72154 * 23 22 21 25 25 C 1.50597 * 129.16155 * 180.21813 * 20 19 18 26 26 C 1.43619 * 120.05941 * 282.74044 * 13 12 11 27 27 C 1.48865 * 118.94116 * 24.93870 * 9 7 2 28 28 H 0.96994 * 120.00552 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.76458 * 154.00892 * 10 9 7 30 30 H 1.08999 * 109.80513 * 33.26627 * 10 9 7 31 31 H 1.08996 * 109.00485 * 161.06454 * 11 10 9 32 32 H 1.09000 * 108.94630 * 42.23186 * 11 10 9 33 33 H 1.08998 * 109.32253 * 298.03359 * 12 11 10 34 34 H 1.08996 * 109.17773 * 178.47331 * 12 11 10 35 35 H 1.08992 * 109.47117 * 59.99839 * 16 14 13 36 36 H 1.08999 * 109.46824 * 299.99706 * 16 14 13 37 37 H 1.08995 * 109.69604 * 283.25469 * 22 21 17 38 38 H 1.09001 * 109.69090 * 43.84032 * 22 21 17 39 39 H 1.09007 * 109.45704 * 169.74031 * 23 22 21 40 40 H 1.09001 * 109.46253 * 289.71285 * 23 22 21 41 41 H 1.08999 * 109.45825 * 49.96601 * 24 23 22 42 42 H 1.09001 * 109.45424 * 169.92133 * 24 23 22 43 43 H 1.08997 * 109.68879 * 283.08353 * 25 20 19 44 44 H 1.08994 * 109.69208 * 43.66164 * 25 20 19 45 45 H 1.08997 * 108.87461 * 211.19476 * 26 13 12 46 46 H 1.09001 * 108.87503 * 329.63678 * 26 13 12 47 47 H 1.08994 * 109.48111 * 260.61130 * 27 9 7 48 48 H 1.08998 * 109.47572 * 20.63024 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0640 -1.2171 0.2369 9 7 1.3591 -2.3689 -0.2988 10 6 1.8826 -3.6055 0.2063 11 6 2.9395 -4.1145 -0.7883 12 6 2.3237 -4.7470 -1.9655 13 7 1.4280 -3.7888 -2.6558 14 6 1.8375 -3.1787 -3.7857 15 8 2.9381 -3.4141 -4.2373 16 6 0.9276 -2.2039 -4.4878 17 7 1.5985 -1.6823 -5.6811 18 7 2.3460 -0.6310 -5.7332 19 7 2.7811 -0.4510 -6.9344 20 6 2.3042 -1.4206 -7.7084 21 6 1.5440 -2.2142 -6.9142 22 6 0.8088 -3.4377 -7.3922 23 6 0.7271 -3.3839 -8.9234 24 6 2.1168 -3.1020 -9.5011 25 6 2.5234 -1.6578 -9.1794 26 6 0.1266 -3.5055 -2.1186 27 6 0.1303 -2.3134 -1.1374 28 1 -0.4850 0.8399 -0.0004 29 1 1.0791 -4.3364 0.2965 30 1 2.3424 -3.4412 1.1808 31 1 3.5771 -4.8426 -0.2869 32 1 3.5509 -3.2738 -1.1162 33 1 1.7466 -5.6154 -1.6479 34 1 3.1079 -5.0663 -2.6518 35 1 0.6894 -1.3801 -3.8151 36 1 0.0084 -2.7112 -4.7807 37 1 1.3476 -4.3337 -7.0843 38 1 -0.1965 -3.4500 -6.9710 39 1 0.3638 -4.3395 -9.3015 40 1 0.0420 -2.5907 -9.2230 41 1 2.8391 -3.7897 -9.0613 42 1 2.0955 -3.2404 -10.5820 43 1 1.9116 -0.9658 -9.7581 44 1 3.5756 -1.5101 -9.4224 45 1 -0.5522 -3.2777 -2.9404 46 1 -0.2393 -4.3894 -1.5962 47 1 -0.7498 -2.3651 -0.4965 48 1 0.1160 -1.3797 -1.6998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981974148.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:58 Heat of formation + Delta-G solvation = 67.964334 kcal Electronic energy + Delta-G solvation = -30522.120552 eV Core-core repulsion = 26614.051296 eV Total energy + Delta-G solvation = -3908.069255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.46956 -41.35408 -38.77392 -37.94569 -36.08763 -35.94259 -34.40918 -32.81026 -31.52342 -31.10540 -29.87882 -29.09208 -27.05987 -25.50924 -25.10959 -24.08360 -23.60068 -22.31671 -21.50652 -20.55342 -20.21430 -19.07948 -18.53702 -18.06864 -17.37040 -17.16616 -16.66976 -16.41421 -15.95681 -15.65796 -15.47804 -15.11823 -14.88380 -14.78277 -14.75162 -14.59282 -14.41277 -14.06160 -13.97556 -13.62743 -13.40753 -13.16444 -13.04456 -12.92324 -12.58578 -12.53942 -12.39985 -12.24472 -12.12513 -11.96498 -11.81131 -11.76309 -11.73223 -11.48965 -11.42550 -11.33295 -10.77392 -10.53487 -9.84677 -9.69375 -8.68067 -7.91590 -5.32302 0.47278 1.16461 1.33610 1.35204 1.41871 1.44981 1.50423 2.06513 2.45140 3.17025 3.20480 3.25440 3.45506 3.67160 3.72361 3.82960 3.90171 4.02619 4.05429 4.11639 4.20384 4.28164 4.44053 4.47282 4.55163 4.57347 4.58435 4.61698 4.69823 4.78404 4.89397 4.92579 5.00845 5.02928 5.10004 5.21390 5.21514 5.23402 5.24629 5.33738 5.44116 5.47383 5.55680 5.58339 5.69848 5.72832 6.31960 6.36260 6.95275 7.15764 7.45701 7.93837 8.27644 9.11985 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.004118 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.739812 B = 6797.153434 C = 7947.667210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.030 4.030 3 Si 0.936 3.064 4 H -0.300 1.300 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.046 0.954 9 N -0.606 5.606 10 C 0.159 3.841 11 C -0.158 4.158 12 C 0.130 3.870 13 N -0.572 5.572 14 C 0.507 3.493 15 O -0.579 6.579 16 C 0.094 3.906 17 N -0.265 5.265 18 N -0.142 5.142 19 N -0.302 5.302 20 C -0.043 4.043 21 C -0.003 4.003 22 C -0.048 4.048 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.031 4.031 26 C 0.081 3.919 27 C 0.165 3.835 28 H 0.250 0.750 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.018 0.982 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.125 0.875 36 H 0.181 0.819 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.032 0.968 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 -15.375 -16.138 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.227 4.227 3 Si 0.766 3.234 4 H -0.228 1.228 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.064 0.936 9 N -0.329 5.329 10 C 0.032 3.968 11 C -0.199 4.199 12 C 0.009 3.991 13 N -0.302 5.302 14 C 0.294 3.706 15 O -0.460 6.460 16 C -0.030 4.030 17 N -0.056 5.056 18 N -0.119 5.119 19 N -0.166 5.166 20 C -0.184 4.184 21 C -0.138 4.138 22 C -0.087 4.087 23 C -0.146 4.146 24 C -0.154 4.154 25 C -0.071 4.071 26 C -0.044 4.044 27 C 0.039 3.961 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.037 0.963 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.198 0.802 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.050 0.950 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.177 -14.190 -15.445 21.604 hybrid contribution 0.631 1.176 0.483 1.419 sum -4.546 -13.014 -14.962 20.345 Atomic orbital electron populations 1.70061 1.05346 1.25388 1.56055 1.25291 0.95948 0.99703 1.01732 0.85750 0.78599 0.82072 0.76957 1.22771 1.21193 1.20381 1.19260 0.91680 0.86635 1.41143 0.93614 1.43890 1.29374 1.02129 1.57462 1.20446 0.94802 0.87575 0.93969 1.21718 1.00175 0.99784 0.98223 1.20738 0.94041 0.91045 0.93286 1.47459 1.17926 1.42212 1.22629 1.20524 0.87079 0.80964 0.82073 1.90707 1.22802 1.64616 1.67859 1.22190 0.96215 0.99499 0.85134 1.46546 1.32107 1.18066 1.08927 1.78654 1.10448 1.06553 1.16227 1.74713 1.20794 1.24040 0.97020 1.22476 1.01155 0.94485 1.00251 1.22629 1.05128 1.02041 0.84011 1.20512 0.99604 0.90095 0.98461 1.21619 0.97393 1.04420 0.91156 1.21671 0.97209 0.93626 1.02864 1.20152 1.02798 0.99342 0.84761 1.22194 0.82722 1.00595 0.98867 1.21749 0.87632 0.95568 0.91129 0.94058 0.91408 0.94920 0.89506 0.96320 0.87082 0.91233 0.85744 0.80219 0.89442 0.87579 0.87499 0.90607 0.92375 0.87758 0.88740 0.90431 0.87815 0.87748 0.95024 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.36 10.90 21.65 0.24 -51.12 16 2 C -0.03 -1.69 4.95 84.86 0.42 -1.27 16 3 Si 0.94 47.14 29.58 68.60 2.03 49.17 16 4 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.26 -13.98 9.27 84.03 0.78 -13.20 16 8 H 0.05 2.62 7.87 -2.91 -0.02 2.59 16 9 N -0.61 -27.59 2.54 -699.00 -1.77 -29.36 16 10 C 0.16 5.84 5.63 87.21 0.49 6.33 16 11 C -0.16 -5.25 5.64 29.04 0.16 -5.08 16 12 C 0.13 3.62 5.70 84.23 0.48 4.10 16 13 N -0.57 -17.12 2.47 -832.19 -2.05 -19.17 16 14 C 0.51 17.53 7.74 87.66 0.68 18.21 16 15 O -0.58 -24.97 15.86 -3.01 -0.05 -25.02 16 16 C 0.09 2.78 5.27 85.64 0.45 3.23 16 17 N -0.27 -9.31 2.82 -338.78 -0.95 -10.27 16 18 N -0.14 -6.27 13.19 37.02 0.49 -5.78 16 19 N -0.30 -12.48 12.40 -48.99 -0.61 -13.09 16 20 C -0.04 -1.34 7.11 41.75 0.30 -1.04 16 21 C 0.00 -0.09 6.76 41.50 0.28 0.19 16 22 C -0.05 -0.78 5.97 29.94 0.18 -0.60 16 23 C -0.11 -1.19 5.90 30.78 0.18 -1.01 16 24 C -0.12 -1.55 5.90 30.78 0.18 -1.37 16 25 C -0.03 -0.65 6.30 29.97 0.19 -0.46 16 26 C 0.08 2.11 5.01 87.39 0.44 2.54 16 27 C 0.16 6.54 5.17 86.40 0.45 6.99 16 28 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 29 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 30 H 0.03 1.28 8.02 -2.39 -0.02 1.26 16 31 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.02 0.79 7.91 -2.39 -0.02 0.77 16 33 H 0.11 2.17 8.06 -2.39 -0.02 2.15 16 34 H 0.07 2.11 7.12 -2.39 -0.02 2.09 16 35 H 0.12 4.22 7.31 -2.39 -0.02 4.20 16 36 H 0.18 3.11 6.94 -2.39 -0.02 3.10 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.18 7.87 -2.39 -0.02 1.16 16 39 H 0.11 0.59 8.14 -2.38 -0.02 0.58 16 40 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 41 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.10 1.93 6.38 -2.39 -0.02 1.92 16 46 H 0.10 2.12 7.73 -2.39 -0.02 2.10 16 47 H 0.03 1.35 8.00 -2.39 -0.02 1.33 16 48 H 0.04 1.96 5.72 -2.39 -0.01 1.95 16 Total: -1.00 -82.95 373.31 3.93 -79.02 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.96 Total: 8.07 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 5.66 Total: 17.56 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -4.66 Total: -128.79 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -82.95 3.93 -79.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981974148.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.980 kcal (2) G-P(sol) polarization free energy of solvation -82.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds