Wall clock time and date at job start Tue Mar 31 2020 18:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09001 * 109.01573 * 35.80529 * 10 9 7 12 12 C 1.52821 * 109.02399 * 276.96088 * 10 9 7 13 13 C 1.53793 * 107.51130 * 299.22900 * 12 10 9 14 14 C 1.52594 * 107.80157 * 294.70351 * 13 12 10 15 15 C 1.52996 * 111.05231 * 63.22454 * 14 13 12 16 16 H 1.08996 * 112.08246 * 73.33513 * 15 14 13 17 17 C 1.55354 * 106.97702 * 196.91806 * 15 14 13 18 18 N 1.47171 * 106.95878 * 91.81882 * 17 15 14 19 19 C 1.34784 * 125.64336 * 180.99616 * 18 17 15 20 20 O 1.21281 * 119.99579 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99959 * 359.97438 * 19 18 17 22 22 C 1.53004 * 109.46960 * 179.97438 * 21 19 18 23 23 N 1.46493 * 109.47137 * 180.02562 * 22 21 19 24 24 C 1.35310 * 125.87247 * 124.71897 * 23 22 21 25 25 C 1.35354 * 106.17625 * 179.90510 * 24 23 22 26 26 N 1.33772 * 106.49699 * 0.34730 * 25 24 23 27 27 N 1.28632 * 108.88500 * 359.77755 * 26 25 24 28 28 C 1.47810 * 108.70824 * 0.96105 * 18 17 15 29 29 C 1.50736 * 109.02441 * 154.72393 * 10 9 7 30 30 H 1.08998 * 109.26776 * 306.81000 * 29 10 9 31 31 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.73893 * 57.98352 * 12 10 9 34 34 H 1.09004 * 109.74205 * 178.68661 * 12 10 9 35 35 H 1.09003 * 109.25721 * 175.56967 * 13 12 10 36 36 H 1.09003 * 110.73169 * 54.67621 * 13 12 10 37 37 H 1.09004 * 109.15937 * 302.81828 * 14 13 12 38 38 H 1.08995 * 109.11852 * 183.60790 * 14 13 12 39 39 H 1.08995 * 109.95923 * 211.19280 * 17 15 14 40 40 H 1.08996 * 109.96231 * 332.43954 * 17 15 14 41 41 H 1.08998 * 109.47357 * 300.00088 * 21 19 18 42 42 H 1.09004 * 109.46919 * 60.00235 * 21 19 18 43 43 H 1.09010 * 109.46940 * 300.00383 * 22 21 19 44 44 H 1.08998 * 109.46961 * 59.99724 * 22 21 19 45 45 H 1.08005 * 126.91206 * 0.02562 * 24 23 22 46 46 H 1.07998 * 126.75018 * 180.12860 * 25 24 23 47 47 H 1.08995 * 110.51505 * 264.70235 * 28 18 17 48 48 H 1.09001 * 110.51175 * 141.99204 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5661 -3.1929 -0.6138 12 6 4.2089 -2.9977 1.4245 13 6 4.9754 -1.9519 2.2517 14 6 6.4010 -1.8838 1.7119 15 6 6.4166 -1.4006 0.2603 16 1 6.2038 -0.3345 0.1810 17 6 7.8066 -1.7711 -0.3262 18 7 7.6706 -3.0987 -0.9468 19 6 8.6581 -3.7872 -1.5529 20 8 8.4312 -4.8783 -2.0314 21 6 10.0441 -3.2013 -1.6360 22 6 10.9677 -4.1780 -2.3668 23 7 12.3151 -3.6087 -2.4470 24 6 13.4520 -4.1975 -2.0092 25 6 14.4548 -3.3301 -2.2812 26 7 13.8888 -2.2637 -2.8575 27 7 12.6203 -2.4600 -2.9413 28 6 6.2721 -3.5522 -0.7944 29 6 5.4739 -2.2488 -0.6134 30 1 5.3606 -1.7714 -1.5868 31 1 -0.4851 0.8401 0.0004 32 1 3.8646 -0.3620 0.0004 33 1 3.2087 -3.1221 1.8395 34 1 4.7321 -3.9540 1.4303 35 1 4.9929 -2.2624 3.2964 36 1 4.5041 -0.9727 2.1678 37 1 6.8510 -2.8753 1.7639 38 1 6.9822 -1.1948 2.3247 39 1 8.1011 -1.0378 -1.0769 40 1 8.5492 -1.8071 0.4708 41 1 10.0077 -2.2581 -2.1811 42 1 10.4250 -3.0251 -0.6300 43 1 11.0039 -5.1211 -1.8212 44 1 10.5869 -4.3546 -3.3727 45 1 13.5415 -5.1658 -1.5393 46 1 15.5048 -3.4697 -2.0709 47 1 6.1703 -4.1877 0.0852 48 1 5.9424 -4.0808 -1.6889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992669421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:45 Heat of formation + Delta-G solvation = 78.764411 kcal Electronic energy + Delta-G solvation = -28927.366058 eV Core-core repulsion = 25019.765129 eV Total energy + Delta-G solvation = -3907.600929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.59644 -40.84772 -39.09535 -35.95301 -35.58051 -33.56617 -31.91578 -31.60807 -31.36504 -30.52091 -29.84737 -26.99558 -25.99025 -24.38302 -23.05817 -22.67597 -22.15176 -21.68377 -21.15100 -19.46119 -18.42445 -18.20641 -17.65764 -16.93169 -16.79969 -16.44338 -15.68386 -15.50045 -15.24725 -14.63741 -14.52267 -14.29393 -14.14696 -14.07093 -13.62578 -13.30015 -13.15430 -13.00168 -12.81778 -12.55773 -12.24635 -12.15073 -11.88603 -11.82083 -11.58492 -11.36657 -11.26019 -11.24006 -10.97715 -10.82519 -10.57230 -10.35856 -10.23006 -10.14710 -9.90979 -9.76468 -9.69457 -9.59917 -8.93297 -8.83882 -7.31721 -5.80983 -3.16667 1.21419 1.85119 2.23494 2.28102 2.74503 3.31179 3.34212 3.41347 3.89697 4.07269 4.10743 4.25156 4.36285 4.53957 4.57909 4.65036 4.69858 4.74772 4.84204 4.95722 5.05441 5.12851 5.22190 5.25699 5.36436 5.39185 5.44749 5.52313 5.59330 5.60228 5.68508 5.77212 5.78407 5.85044 5.92470 5.95623 6.10046 6.15309 6.18739 6.21296 6.28461 6.62143 6.68240 6.82960 6.92531 7.24283 7.79735 7.94986 8.14833 8.37792 9.16018 9.88263 10.07836 11.37363 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.002381 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.259690 B =11758.412497 C =12158.249971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.744 5.744 10 C 0.194 3.806 11 H 0.056 0.944 12 C -0.135 4.135 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.089 4.089 16 H 0.097 0.903 17 C 0.097 3.903 18 N -0.611 5.611 19 C 0.535 3.465 20 O -0.545 6.545 21 C -0.151 4.151 22 C 0.132 3.868 23 N -0.291 5.291 24 C -0.048 4.048 25 C -0.054 4.054 26 N -0.272 5.272 27 N -0.085 5.085 28 C 0.115 3.885 29 C -0.100 4.100 30 H 0.081 0.919 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.191 0.809 46 H 0.190 0.810 47 H 0.075 0.925 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.676 -9.003 0.880 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.084 3.916 11 H 0.074 0.926 12 C -0.175 4.175 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.108 4.108 16 H 0.115 0.885 17 C -0.025 4.025 18 N -0.344 5.344 19 C 0.322 3.678 20 O -0.424 6.424 21 C -0.192 4.192 22 C 0.010 3.990 23 N -0.085 5.085 24 C -0.199 4.199 25 C -0.211 4.211 26 N -0.138 5.138 27 N -0.065 5.065 28 C -0.007 4.007 29 C -0.120 4.120 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.208 0.792 46 H 0.207 0.793 47 H 0.093 0.907 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.803 -8.411 -0.107 26.191 hybrid contribution 0.897 0.294 0.665 1.154 sum 25.700 -8.117 0.558 26.957 Atomic orbital electron populations 1.69691 1.05102 1.25786 1.57516 1.24658 0.95183 0.97108 1.02146 0.86600 0.79193 0.85234 0.77734 1.21172 1.21830 1.20337 1.19050 0.80508 0.94643 1.42867 0.89184 1.42750 1.03867 1.01714 1.90328 1.19454 0.88691 0.89660 0.93762 0.92602 1.22263 1.00482 0.96487 0.98297 1.21490 0.94304 1.01250 0.97940 1.21546 0.98320 1.00535 0.94332 1.22211 0.92354 1.00719 0.95535 0.88522 1.22524 0.99069 0.83793 0.97152 1.48576 1.10418 1.19498 1.55915 1.19738 0.85384 0.84801 0.77836 1.90743 1.83226 1.20625 1.47758 1.21851 0.92596 1.01105 1.03625 1.21861 0.75804 0.96565 1.04740 1.47578 1.09218 1.13224 1.38454 1.23757 0.85739 1.03147 1.07254 1.23661 1.01314 0.91864 1.04303 1.75145 0.99073 1.23149 1.16457 1.78327 1.10163 1.00740 1.17233 1.22249 0.79007 0.97117 1.02309 1.21817 0.95432 0.94692 1.00044 0.90105 0.93068 0.80695 0.91309 0.93211 0.93106 0.90605 0.92403 0.92535 0.91226 0.91125 0.86961 0.88053 0.86588 0.87115 0.79175 0.79318 0.90663 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.97 55.49 0.78 -27.75 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.20 27.74 -169.99 -4.71 16.49 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 7 C -0.24 -6.38 10.37 -15.06 -0.16 -6.53 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 N -0.74 -15.87 3.93 -54.62 -0.21 -16.09 16 10 C 0.19 3.29 2.51 -69.16 -0.17 3.11 16 11 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 12 C -0.14 -2.09 5.48 -26.41 -0.14 -2.24 16 13 C -0.11 -1.60 5.85 -26.53 -0.16 -1.76 16 14 C -0.11 -1.25 4.64 -26.94 -0.12 -1.38 16 15 C -0.09 -1.04 3.24 -88.85 -0.29 -1.33 16 16 H 0.10 1.19 7.99 -51.93 -0.41 0.77 16 17 C 0.10 0.91 5.82 -2.43 -0.01 0.89 16 18 N -0.61 -6.58 3.34 -170.06 -0.57 -7.14 16 19 C 0.53 5.66 7.85 -10.98 -0.09 5.57 16 20 O -0.55 -7.42 16.26 5.56 0.09 -7.33 16 21 C -0.15 -1.12 5.02 -27.88 -0.14 -1.26 16 22 C 0.13 0.89 5.75 -4.04 -0.02 0.87 16 23 N -0.29 -2.39 3.44 -61.26 -0.21 -2.61 16 24 C -0.05 -0.30 11.57 -17.05 -0.20 -0.50 16 25 C -0.05 -0.42 12.05 -17.73 -0.21 -0.63 16 26 N -0.27 -3.15 12.41 30.24 0.38 -2.77 16 27 N -0.08 -0.96 12.91 60.35 0.78 -0.18 16 28 C 0.12 1.41 5.87 -2.85 -0.02 1.39 16 29 C -0.10 -1.36 2.30 -90.76 -0.21 -1.57 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.36 7.57 5.16 -40.82 -0.21 7.36 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.66 6.80 -51.93 -0.35 0.31 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.29 7.35 -51.93 -0.38 0.91 16 37 H 0.06 0.63 7.21 -51.93 -0.37 0.25 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.55 7.76 -51.93 -0.40 0.14 16 41 H 0.11 0.86 8.12 -51.93 -0.42 0.43 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.12 0.59 8.03 -51.92 -0.42 0.17 16 44 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.19 0.43 8.06 -52.48 -0.42 0.00 16 46 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.08 0.91 6.17 -51.93 -0.32 0.59 16 48 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -33.77 378.70 -7.55 -41.32 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.53 Total: 5.65 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.04 Total: -5.31 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.94 Total: -56.53 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.09 Total: -7.33 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.77 -7.55 -41.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992669421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.085 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds