Wall clock time and date at job start Tue Mar 31 2020 18:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09001 * 109.01573 * 35.80529 * 10 9 7 12 12 C 1.52821 * 109.02399 * 276.96088 * 10 9 7 13 13 C 1.53793 * 107.51130 * 299.22900 * 12 10 9 14 14 C 1.52594 * 107.80157 * 294.70351 * 13 12 10 15 15 C 1.52996 * 111.05231 * 63.22454 * 14 13 12 16 16 H 1.08996 * 112.08246 * 73.33513 * 15 14 13 17 17 C 1.55354 * 106.97702 * 196.91806 * 15 14 13 18 18 N 1.47171 * 106.95878 * 91.81882 * 17 15 14 19 19 C 1.34784 * 125.64336 * 180.99616 * 18 17 15 20 20 O 1.21281 * 119.99579 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99959 * 359.97438 * 19 18 17 22 22 C 1.53004 * 109.46960 * 179.97438 * 21 19 18 23 23 N 1.46493 * 109.47137 * 180.02562 * 22 21 19 24 24 C 1.35310 * 125.87247 * 124.71897 * 23 22 21 25 25 C 1.35354 * 106.17625 * 179.90510 * 24 23 22 26 26 N 1.33772 * 106.49699 * 0.34730 * 25 24 23 27 27 N 1.28632 * 108.88500 * 359.77755 * 26 25 24 28 28 C 1.47810 * 108.70824 * 0.96105 * 18 17 15 29 29 C 1.50736 * 109.02441 * 154.72393 * 10 9 7 30 30 H 1.08998 * 109.26776 * 306.81000 * 29 10 9 31 31 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.73893 * 57.98352 * 12 10 9 34 34 H 1.09004 * 109.74205 * 178.68661 * 12 10 9 35 35 H 1.09003 * 109.25721 * 175.56967 * 13 12 10 36 36 H 1.09003 * 110.73169 * 54.67621 * 13 12 10 37 37 H 1.09004 * 109.15937 * 302.81828 * 14 13 12 38 38 H 1.08995 * 109.11852 * 183.60790 * 14 13 12 39 39 H 1.08995 * 109.95923 * 211.19280 * 17 15 14 40 40 H 1.08996 * 109.96231 * 332.43954 * 17 15 14 41 41 H 1.08998 * 109.47357 * 300.00088 * 21 19 18 42 42 H 1.09004 * 109.46919 * 60.00235 * 21 19 18 43 43 H 1.09010 * 109.46940 * 300.00383 * 22 21 19 44 44 H 1.08998 * 109.46961 * 59.99724 * 22 21 19 45 45 H 1.08005 * 126.91206 * 0.02562 * 24 23 22 46 46 H 1.07998 * 126.75018 * 180.12860 * 25 24 23 47 47 H 1.08995 * 110.51505 * 264.70235 * 28 18 17 48 48 H 1.09001 * 110.51175 * 141.99204 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5661 -3.1929 -0.6138 12 6 4.2089 -2.9977 1.4245 13 6 4.9754 -1.9519 2.2517 14 6 6.4010 -1.8838 1.7119 15 6 6.4166 -1.4006 0.2603 16 1 6.2038 -0.3345 0.1810 17 6 7.8066 -1.7711 -0.3262 18 7 7.6706 -3.0987 -0.9468 19 6 8.6581 -3.7872 -1.5529 20 8 8.4312 -4.8783 -2.0314 21 6 10.0441 -3.2013 -1.6360 22 6 10.9677 -4.1780 -2.3668 23 7 12.3151 -3.6087 -2.4470 24 6 13.4520 -4.1975 -2.0092 25 6 14.4548 -3.3301 -2.2812 26 7 13.8888 -2.2637 -2.8575 27 7 12.6203 -2.4600 -2.9413 28 6 6.2721 -3.5522 -0.7944 29 6 5.4739 -2.2488 -0.6134 30 1 5.3606 -1.7714 -1.5868 31 1 -0.4851 0.8401 0.0004 32 1 3.8646 -0.3620 0.0004 33 1 3.2087 -3.1221 1.8395 34 1 4.7321 -3.9540 1.4303 35 1 4.9929 -2.2624 3.2964 36 1 4.5041 -0.9727 2.1678 37 1 6.8510 -2.8753 1.7639 38 1 6.9822 -1.1948 2.3247 39 1 8.1011 -1.0378 -1.0769 40 1 8.5492 -1.8071 0.4708 41 1 10.0077 -2.2581 -2.1811 42 1 10.4250 -3.0251 -0.6300 43 1 11.0039 -5.1211 -1.8212 44 1 10.5869 -4.3546 -3.3727 45 1 13.5415 -5.1658 -1.5393 46 1 15.5048 -3.4697 -2.0709 47 1 6.1703 -4.1877 0.0852 48 1 5.9424 -4.0808 -1.6889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992669421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:44 Heat of formation + Delta-G solvation = 55.789706 kcal Electronic energy + Delta-G solvation = -28928.362316 eV Core-core repulsion = 25019.765129 eV Total energy + Delta-G solvation = -3908.597187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.17409 -41.81155 -40.07584 -37.17347 -36.23343 -35.11378 -33.35262 -32.61897 -31.93513 -31.47180 -31.23143 -28.13333 -26.77679 -25.67458 -24.13822 -23.56111 -23.26727 -22.36520 -22.25900 -20.26064 -19.91958 -19.32172 -18.82773 -17.68612 -17.48288 -17.35486 -16.57534 -16.51957 -16.23429 -15.79142 -15.69162 -15.35301 -15.19589 -14.93329 -14.82461 -14.43919 -14.22894 -14.08890 -13.85882 -13.65603 -13.46631 -13.01861 -12.85916 -12.83724 -12.73322 -12.56194 -12.44692 -12.39091 -12.12914 -12.02796 -11.84987 -11.81279 -11.44476 -11.22942 -11.21177 -10.97750 -10.90386 -10.69751 -10.31248 -9.70873 -9.26598 -7.99155 -5.31303 0.67116 1.30716 1.37235 1.41673 1.48579 1.48968 1.65727 1.96720 2.50438 3.25964 3.32657 3.38737 3.43200 3.54125 3.62853 3.72900 3.81255 3.98276 4.16989 4.22322 4.23969 4.26453 4.32423 4.35554 4.37789 4.45959 4.49219 4.60205 4.60540 4.67371 4.74813 4.78373 4.83274 4.87448 4.89253 5.04623 5.11877 5.15338 5.25146 5.30504 5.36951 5.45499 5.60273 5.64998 5.65216 5.82268 6.24687 6.43020 6.98547 7.11983 7.54377 7.88036 8.07928 9.22705 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.002381 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.259690 B =11758.412497 C =12158.249971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.951 3.049 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.243 1.243 7 C -0.219 4.219 8 H 0.053 0.947 9 N -0.743 5.743 10 C 0.190 3.810 11 H 0.033 0.967 12 C -0.129 4.129 13 C -0.111 4.111 14 C -0.101 4.101 15 C -0.091 4.091 16 H 0.094 0.906 17 C 0.104 3.896 18 N -0.612 5.612 19 C 0.536 3.464 20 O -0.579 6.579 21 C -0.138 4.138 22 C 0.132 3.868 23 N -0.290 5.290 24 C -0.032 4.032 25 C -0.066 4.066 26 N -0.314 5.314 27 N -0.126 5.126 28 C 0.122 3.878 29 C -0.094 4.094 30 H 0.067 0.933 31 H 0.255 0.745 32 H 0.366 0.634 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.138 0.862 44 H 0.101 0.899 45 H 0.234 0.766 46 H 0.217 0.783 47 H 0.081 0.919 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.972 -9.270 2.125 31.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.259 4.259 3 Si 0.779 3.221 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.168 1.168 7 C -0.350 4.350 8 H 0.071 0.929 9 N -0.386 5.386 10 C 0.082 3.918 11 H 0.052 0.948 12 C -0.169 4.169 13 C -0.149 4.149 14 C -0.139 4.139 15 C -0.110 4.110 16 H 0.113 0.887 17 C -0.018 4.018 18 N -0.344 5.344 19 C 0.325 3.675 20 O -0.460 6.460 21 C -0.178 4.178 22 C 0.011 3.989 23 N -0.084 5.084 24 C -0.183 4.183 25 C -0.224 4.224 26 N -0.179 5.179 27 N -0.105 5.105 28 C -0.001 4.001 29 C -0.114 4.114 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.199 0.801 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.156 0.844 44 H 0.119 0.881 45 H 0.250 0.750 46 H 0.234 0.766 47 H 0.099 0.901 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 29.163 -8.685 1.140 30.450 hybrid contribution -0.469 0.174 0.272 0.570 sum 28.694 -8.511 1.412 29.963 Atomic orbital electron populations 1.69888 1.07239 1.26428 1.60296 1.25475 0.96030 1.01181 1.03216 0.85465 0.79000 0.79769 0.77889 1.20903 1.22865 1.16764 1.18978 0.82765 0.93086 1.40208 0.92886 1.42691 1.02055 1.03690 1.90192 1.19618 0.90114 0.87287 0.94767 0.94845 1.22154 0.99397 0.98424 0.96929 1.21447 0.95890 0.98927 0.98636 1.21500 0.96295 1.02015 0.94067 1.22229 0.93065 1.00144 0.95529 0.88728 1.22583 0.97980 0.83050 0.98224 1.48603 1.09614 1.20110 1.56117 1.20227 0.86237 0.84252 0.76766 1.90734 1.83893 1.22275 1.49050 1.21759 0.90462 1.00749 1.04875 1.21933 0.75236 0.97140 1.04577 1.47701 1.10056 1.12732 1.37887 1.24460 0.84415 1.04013 1.05412 1.24265 1.03054 0.91206 1.03841 1.75084 0.99645 1.25229 1.17924 1.78279 1.10355 1.02496 1.19378 1.22025 0.80047 0.96061 1.01923 1.21574 0.94003 0.96239 0.99608 0.91413 0.93609 0.80069 0.94740 0.90519 0.91812 0.93422 0.91011 0.90167 0.89958 0.88198 0.87070 0.85960 0.84385 0.88061 0.74977 0.76647 0.90060 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.95 13.97 21.65 0.30 -62.65 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.95 44.21 27.74 68.60 1.90 46.11 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.24 -9.82 6.52 99.48 0.65 -9.17 16 7 C -0.22 -12.04 10.37 84.03 0.87 -11.17 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 9 N -0.74 -31.95 3.93 -326.73 -1.28 -33.24 16 10 C 0.19 6.49 2.51 44.20 0.11 6.60 16 11 H 0.03 1.27 8.07 -2.39 -0.02 1.26 16 12 C -0.13 -3.94 5.48 30.80 0.17 -3.77 16 13 C -0.11 -2.95 5.85 30.73 0.18 -2.77 16 14 C -0.10 -1.91 4.64 30.46 0.14 -1.76 16 15 C -0.09 -1.82 3.24 -9.65 -0.03 -1.85 16 16 H 0.09 1.99 7.99 -2.39 -0.02 1.97 16 17 C 0.10 1.49 5.82 87.06 0.51 1.99 16 18 N -0.61 -11.31 3.34 -810.34 -2.71 -14.02 16 19 C 0.54 9.87 7.85 87.66 0.69 10.55 16 20 O -0.58 -14.70 16.26 -3.03 -0.05 -14.75 16 21 C -0.14 -1.59 5.02 29.85 0.15 -1.44 16 22 C 0.13 1.42 5.75 86.38 0.50 1.91 16 23 N -0.29 -4.01 3.44 -347.73 -1.20 -5.21 16 24 C -0.03 -0.28 11.57 83.49 0.97 0.68 16 25 C -0.07 -0.85 12.05 83.73 1.01 0.16 16 26 N -0.31 -6.88 12.41 -58.25 -0.72 -7.61 16 27 N -0.13 -2.68 12.91 37.02 0.48 -2.21 16 28 C 0.12 2.78 5.87 86.44 0.51 3.29 16 29 C -0.09 -2.44 2.30 -10.89 -0.03 -2.47 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 32 H 0.37 14.96 5.16 -92.71 -0.48 14.48 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.92 6.80 -2.39 -0.02 1.91 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.54 7.35 -2.39 -0.02 1.52 16 37 H 0.07 1.20 7.21 -2.38 -0.02 1.18 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 0.95 7.76 -2.39 -0.02 0.93 16 41 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 42 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.14 0.88 8.03 -2.38 -0.02 0.86 16 44 H 0.10 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.23 -0.19 8.06 -2.91 -0.02 -0.21 16 46 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.08 1.76 6.17 -2.39 -0.01 1.74 16 48 H 0.07 1.70 8.07 -2.39 -0.02 1.68 16 Total: -1.00 -78.60 378.70 3.36 -75.24 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.43 Total: 21.82 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 6.21 Total: -3.50 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -5.13 Total: -124.92 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.05 Total: -14.75 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.11 kcal Total: -78.60 3.36 -75.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992669421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.030 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds