Wall clock time and date at job start Tue Mar 31 2020 18:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48503 * 109.47432 * 240.00534 * 3 2 1 5 5 H 1.48502 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47046 * 120.00258 * 3 2 1 7 7 C 1.38807 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99856 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00577 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.92905 * 327.96546 * 10 9 7 12 12 C 1.53807 * 110.01744 * 206.74447 * 10 9 7 13 13 C 1.52527 * 111.70190 * 298.12268 * 12 10 9 14 14 C 1.51849 * 111.84176 * 306.38143 * 13 12 10 15 15 C 1.51439 * 108.06922 * 56.53572 * 14 13 12 16 16 H 1.08997 * 110.22964 * 55.15861 * 15 14 13 17 17 C 1.52335 * 117.44757 * 182.01718 * 15 14 13 18 18 N 1.48243 * 105.86667 * 145.29687 * 17 15 14 19 19 C 1.34772 * 125.78326 * 176.79502 * 18 17 15 20 20 O 1.21285 * 120.00251 * 180.02562 * 19 18 17 21 21 C 1.50708 * 120.00314 * 0.02872 * 19 18 17 22 22 C 1.53001 * 109.47515 * 179.97438 * 21 19 18 23 23 N 1.46496 * 109.46911 * 179.97438 * 22 21 19 24 24 C 1.35310 * 125.86479 * 124.99881 * 23 22 21 25 25 C 1.35351 * 106.17395 * 179.97438 * 24 23 22 26 26 N 1.33765 * 106.49718 * 0.02562 * 25 24 23 27 27 N 1.28636 * 108.88876 * 359.97438 * 26 25 24 28 28 C 1.48656 * 108.43229 * 357.06299 * 18 17 15 29 29 C 1.51618 * 109.94054 * 89.12754 * 10 9 7 30 30 H 1.09009 * 110.50128 * 174.65786 * 29 10 9 31 31 H 0.96996 * 120.00477 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99377 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.03352 * 58.69869 * 12 10 9 34 34 H 1.09010 * 109.03622 * 177.62139 * 12 10 9 35 35 H 1.08997 * 109.04429 * 66.51381 * 13 12 10 36 36 H 1.09000 * 109.04051 * 185.39209 * 13 12 10 37 37 H 1.09001 * 108.79727 * 297.19667 * 14 13 12 38 38 H 1.09004 * 110.06999 * 176.60774 * 14 13 12 39 39 H 1.08994 * 110.16968 * 26.19853 * 17 15 14 40 40 H 1.08999 * 110.17258 * 264.39639 * 17 15 14 41 41 H 1.09004 * 109.46831 * 59.99521 * 21 19 18 42 42 H 1.09004 * 109.46839 * 300.00408 * 21 19 18 43 43 H 1.09001 * 109.46483 * 59.99683 * 22 21 19 44 44 H 1.08996 * 109.46923 * 300.00050 * 22 21 19 45 45 H 1.08001 * 126.91618 * 359.94648 * 24 23 22 46 46 H 1.08003 * 126.75215 * 179.73753 * 25 24 23 47 47 H 1.09003 * 110.63009 * 93.86086 * 28 18 17 48 48 H 1.08998 * 110.62792 * 216.87835 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 2.9959 -3.5439 -0.5459 12 6 1.2033 -4.7577 -0.6518 13 6 -0.0871 -5.0016 0.1238 14 6 0.1807 -5.2831 1.5918 15 6 0.9652 -4.1180 2.1579 16 1 0.4329 -3.1835 1.9806 17 6 1.3919 -4.2021 3.6179 18 7 2.7126 -3.5330 3.6933 19 6 3.4284 -3.3266 4.8164 20 8 4.5017 -2.7648 4.7568 21 6 2.8954 -3.7940 6.1463 22 6 3.8947 -3.4394 7.2494 23 7 3.3762 -3.8933 8.5422 24 6 4.0176 -4.7076 9.4119 25 6 3.1833 -4.8653 10.4660 26 7 2.0866 -4.1498 10.1929 27 7 2.2323 -3.5858 9.0460 28 6 3.1105 -3.1223 2.3211 29 6 2.3367 -4.0943 1.4230 30 1 2.7975 -5.0821 1.4359 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3880 0.0002 33 1 0.9550 -4.4598 -1.6705 34 1 1.7787 -5.6830 -0.6826 35 1 -0.7196 -4.1171 0.0491 36 1 -0.6113 -5.8502 -0.3158 37 1 0.7655 -6.1994 1.6727 38 1 -0.7611 -5.3934 2.1294 39 1 1.4807 -5.2444 3.9240 40 1 0.6713 -3.6840 4.2506 41 1 2.7512 -4.8742 6.1206 42 1 1.9424 -3.3050 6.3479 43 1 4.0392 -2.3594 7.2751 44 1 4.8474 -3.9288 7.0476 45 1 4.9978 -5.1442 9.2895 46 1 3.3652 -5.4568 11.3512 47 1 2.8095 -2.0930 2.1258 48 1 4.1846 -3.2426 2.1806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992669429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:52 Heat of formation + Delta-G solvation = 77.414836 kcal Electronic energy + Delta-G solvation = -29301.151284 eV Core-core repulsion = 25393.491833 eV Total energy + Delta-G solvation = -3907.659451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.44566 -40.39557 -38.85587 -35.70068 -35.32101 -33.75904 -31.68857 -31.39511 -31.20990 -30.21926 -28.94030 -27.04585 -25.82750 -24.23883 -23.20818 -22.86961 -21.60072 -20.96825 -20.77040 -19.17142 -18.75787 -18.00828 -17.19706 -16.77252 -16.43247 -15.95504 -15.64549 -15.13078 -14.85592 -14.67856 -14.50959 -14.29266 -14.03544 -13.66567 -13.42342 -13.06218 -12.87398 -12.74874 -12.45888 -12.32837 -12.04080 -11.90065 -11.69887 -11.60085 -11.43714 -11.21429 -11.11191 -10.88820 -10.79810 -10.44175 -10.39312 -10.33268 -10.18782 -9.98430 -9.82055 -9.61738 -9.56228 -9.42434 -8.93892 -8.39991 -7.03685 -5.83774 -3.12054 1.37252 2.03728 2.37537 2.65152 3.10684 3.41735 3.46715 3.48020 4.10247 4.28067 4.35682 4.47478 4.54719 4.70773 4.78219 4.91702 4.97820 5.00573 5.10045 5.18686 5.32187 5.36297 5.46042 5.50105 5.56237 5.60795 5.63394 5.74359 5.77792 5.90602 5.92596 5.93373 6.00224 6.07316 6.19490 6.26554 6.31074 6.31807 6.38808 6.57579 6.60192 6.70270 6.80590 6.81998 7.03476 7.64333 7.67248 8.18131 8.30010 8.35054 9.47095 10.03247 10.38161 11.38197 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003083 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.211372 B = 9079.783507 C =10365.315273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.715 5.715 10 C 0.189 3.811 11 H 0.053 0.947 12 C -0.121 4.121 13 C -0.115 4.115 14 C -0.096 4.096 15 C -0.107 4.107 16 H 0.106 0.894 17 C 0.112 3.888 18 N -0.611 5.611 19 C 0.531 3.469 20 O -0.551 6.551 21 C -0.150 4.150 22 C 0.131 3.869 23 N -0.289 5.289 24 C -0.049 4.049 25 C -0.056 4.056 26 N -0.274 5.274 27 N -0.083 5.083 28 C 0.117 3.883 29 C -0.119 4.119 30 H 0.063 0.937 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.190 0.810 46 H 0.189 0.811 47 H 0.104 0.896 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -15.228 11.515 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.077 3.923 11 H 0.071 0.929 12 C -0.160 4.160 13 C -0.153 4.153 14 C -0.134 4.134 15 C -0.126 4.126 16 H 0.124 0.876 17 C -0.011 4.011 18 N -0.344 5.344 19 C 0.318 3.682 20 O -0.430 6.430 21 C -0.191 4.191 22 C 0.010 3.990 23 N -0.083 5.083 24 C -0.200 4.200 25 C -0.213 4.213 26 N -0.140 5.140 27 N -0.063 5.063 28 C -0.004 4.004 29 C -0.141 4.141 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.207 0.793 46 H 0.206 0.794 47 H 0.122 0.878 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.789 -13.953 11.295 18.580 hybrid contribution 1.211 0.267 0.154 1.250 sum 6.000 -13.687 11.449 18.826 Atomic orbital electron populations 1.69628 1.05059 1.25875 1.57227 1.24695 0.95430 0.97577 1.02751 0.86366 0.78671 0.83813 0.77975 1.21248 1.21734 1.21168 1.19149 0.90933 0.84033 1.43086 0.91182 1.42433 1.05757 0.99440 1.88083 1.19891 0.94726 0.86614 0.91029 0.92852 1.21796 0.96308 0.98223 0.99631 1.21108 0.98182 1.01480 0.94519 1.20870 0.99366 0.96937 0.96216 1.21854 0.97681 1.01379 0.91711 0.87557 1.21773 0.84050 0.96410 0.98855 1.49212 1.20295 1.57242 1.07641 1.19674 0.84479 0.79653 0.84362 1.90722 1.22058 1.43718 1.86542 1.21841 1.01125 1.04074 0.92039 1.21887 0.97412 1.03343 0.76355 1.47613 1.12605 1.31592 1.16459 1.23743 1.02648 1.00979 0.92667 1.23637 0.91878 1.04518 1.01269 1.75137 1.22554 1.09621 1.06698 1.78342 1.01868 1.20359 1.05734 1.22293 0.98647 1.01354 0.78079 1.22878 0.94728 0.97721 0.98769 0.91829 0.93415 0.77981 0.91805 0.92829 0.91438 0.92744 0.92639 0.92212 0.92049 0.91382 0.88342 0.87099 0.87106 0.86646 0.79252 0.79403 0.87788 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.10 8.05 -15.06 -0.12 -6.22 16 8 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 9 N -0.72 -15.72 3.84 -53.70 -0.21 -15.93 16 10 C 0.19 3.29 3.02 -68.21 -0.21 3.08 16 11 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 12 C -0.12 -1.76 5.51 -26.55 -0.15 -1.90 16 13 C -0.12 -1.55 5.54 -27.56 -0.15 -1.70 16 14 C -0.10 -1.18 5.57 -28.10 -0.16 -1.34 16 15 C -0.11 -1.56 2.24 -90.35 -0.20 -1.77 16 16 H 0.11 1.96 6.67 -51.93 -0.35 1.61 16 17 C 0.11 1.45 6.23 -3.42 -0.02 1.43 16 18 N -0.61 -9.28 3.38 -170.72 -0.58 -9.86 16 19 C 0.53 7.74 7.86 -10.98 -0.09 7.65 16 20 O -0.55 -9.74 16.27 5.55 0.09 -9.65 16 21 C -0.15 -1.58 5.04 -27.88 -0.14 -1.72 16 22 C 0.13 1.24 5.74 -4.04 -0.02 1.22 16 23 N -0.29 -2.99 3.44 -61.27 -0.21 -3.20 16 24 C -0.05 -0.39 11.57 -17.05 -0.20 -0.59 16 25 C -0.06 -0.51 12.05 -17.74 -0.21 -0.72 16 26 N -0.27 -3.62 12.41 30.23 0.38 -3.24 16 27 N -0.08 -1.11 12.91 60.35 0.78 -0.33 16 28 C 0.12 2.04 6.45 -2.70 -0.02 2.02 16 29 C -0.12 -1.84 2.32 -89.77 -0.21 -2.05 16 30 H 0.06 0.90 8.03 -51.92 -0.42 0.48 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.39 9.08 6.09 -40.82 -0.25 8.84 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 1.06 7.03 -51.93 -0.37 0.69 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.11 1.22 8.12 -51.93 -0.42 0.80 16 43 H 0.11 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.12 0.87 8.03 -51.93 -0.42 0.46 16 45 H 0.19 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.19 1.04 8.06 -52.48 -0.42 0.62 16 47 H 0.10 2.22 6.16 -51.93 -0.32 1.90 16 48 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -31.79 380.47 -7.86 -39.66 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.56 Total: 8.72 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.99 Total: -2.93 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.89 Total: -58.37 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.79 -7.86 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992669429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.071 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds