Wall clock time and date at job start Tue Mar 31 2020 18:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48503 * 109.47432 * 240.00534 * 3 2 1 5 5 H 1.48502 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47046 * 120.00258 * 3 2 1 7 7 C 1.38807 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99856 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00577 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.92905 * 327.96546 * 10 9 7 12 12 C 1.53807 * 110.01744 * 206.74447 * 10 9 7 13 13 C 1.52527 * 111.70190 * 298.12268 * 12 10 9 14 14 C 1.51849 * 111.84176 * 306.38143 * 13 12 10 15 15 C 1.51439 * 108.06922 * 56.53572 * 14 13 12 16 16 H 1.08997 * 110.22964 * 55.15861 * 15 14 13 17 17 C 1.52335 * 117.44757 * 182.01718 * 15 14 13 18 18 N 1.48243 * 105.86667 * 145.29687 * 17 15 14 19 19 C 1.34772 * 125.78326 * 176.79502 * 18 17 15 20 20 O 1.21285 * 120.00251 * 180.02562 * 19 18 17 21 21 C 1.50708 * 120.00314 * 0.02872 * 19 18 17 22 22 C 1.53001 * 109.47515 * 179.97438 * 21 19 18 23 23 N 1.46496 * 109.46911 * 179.97438 * 22 21 19 24 24 C 1.35310 * 125.86479 * 124.99881 * 23 22 21 25 25 C 1.35351 * 106.17395 * 179.97438 * 24 23 22 26 26 N 1.33765 * 106.49718 * 0.02562 * 25 24 23 27 27 N 1.28636 * 108.88876 * 359.97438 * 26 25 24 28 28 C 1.48656 * 108.43229 * 357.06299 * 18 17 15 29 29 C 1.51618 * 109.94054 * 89.12754 * 10 9 7 30 30 H 1.09009 * 110.50128 * 174.65786 * 29 10 9 31 31 H 0.96996 * 120.00477 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99377 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.03352 * 58.69869 * 12 10 9 34 34 H 1.09010 * 109.03622 * 177.62139 * 12 10 9 35 35 H 1.08997 * 109.04429 * 66.51381 * 13 12 10 36 36 H 1.09000 * 109.04051 * 185.39209 * 13 12 10 37 37 H 1.09001 * 108.79727 * 297.19667 * 14 13 12 38 38 H 1.09004 * 110.06999 * 176.60774 * 14 13 12 39 39 H 1.08994 * 110.16968 * 26.19853 * 17 15 14 40 40 H 1.08999 * 110.17258 * 264.39639 * 17 15 14 41 41 H 1.09004 * 109.46831 * 59.99521 * 21 19 18 42 42 H 1.09004 * 109.46839 * 300.00408 * 21 19 18 43 43 H 1.09001 * 109.46483 * 59.99683 * 22 21 19 44 44 H 1.08996 * 109.46923 * 300.00050 * 22 21 19 45 45 H 1.08001 * 126.91618 * 359.94648 * 24 23 22 46 46 H 1.08003 * 126.75215 * 179.73753 * 25 24 23 47 47 H 1.09003 * 110.63009 * 93.86086 * 28 18 17 48 48 H 1.08998 * 110.62792 * 216.87835 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 2.9959 -3.5439 -0.5459 12 6 1.2033 -4.7577 -0.6518 13 6 -0.0871 -5.0016 0.1238 14 6 0.1807 -5.2831 1.5918 15 6 0.9652 -4.1180 2.1579 16 1 0.4329 -3.1835 1.9806 17 6 1.3919 -4.2021 3.6179 18 7 2.7126 -3.5330 3.6933 19 6 3.4284 -3.3266 4.8164 20 8 4.5017 -2.7648 4.7568 21 6 2.8954 -3.7940 6.1463 22 6 3.8947 -3.4394 7.2494 23 7 3.3762 -3.8933 8.5422 24 6 4.0176 -4.7076 9.4119 25 6 3.1833 -4.8653 10.4660 26 7 2.0866 -4.1498 10.1929 27 7 2.2323 -3.5858 9.0460 28 6 3.1105 -3.1223 2.3211 29 6 2.3367 -4.0943 1.4230 30 1 2.7975 -5.0821 1.4359 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3880 0.0002 33 1 0.9550 -4.4598 -1.6705 34 1 1.7787 -5.6830 -0.6826 35 1 -0.7196 -4.1171 0.0491 36 1 -0.6113 -5.8502 -0.3158 37 1 0.7655 -6.1994 1.6727 38 1 -0.7611 -5.3934 2.1294 39 1 1.4807 -5.2444 3.9240 40 1 0.6713 -3.6840 4.2506 41 1 2.7512 -4.8742 6.1206 42 1 1.9424 -3.3050 6.3479 43 1 4.0392 -2.3594 7.2751 44 1 4.8474 -3.9288 7.0476 45 1 4.9978 -5.1442 9.2895 46 1 3.3652 -5.4568 11.3512 47 1 2.8095 -2.0930 2.1258 48 1 4.1846 -3.2426 2.1806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992669429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:51 Heat of formation + Delta-G solvation = 56.580392 kcal Electronic energy + Delta-G solvation = -29302.054733 eV Core-core repulsion = 25393.491833 eV Total energy + Delta-G solvation = -3908.562900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.19043 -41.62279 -40.07060 -36.93443 -36.23953 -35.40586 -33.12711 -32.57148 -31.94234 -31.30582 -30.50278 -28.33595 -26.80105 -25.73508 -24.70709 -23.58230 -22.43004 -22.18762 -21.92235 -20.33844 -20.07230 -19.10574 -18.83625 -17.65504 -17.49020 -17.00767 -16.71826 -16.55669 -15.88684 -15.85760 -15.70036 -15.56758 -15.19799 -14.99758 -14.49898 -14.39680 -14.10162 -13.81765 -13.66222 -13.53660 -13.20857 -13.08322 -12.83820 -12.82957 -12.70229 -12.64425 -12.45720 -12.40576 -12.17240 -11.86859 -11.78921 -11.61706 -11.36897 -11.23310 -11.09509 -10.98458 -10.88493 -10.56092 -10.32535 -9.67064 -8.93455 -7.92079 -5.15737 0.66198 1.28795 1.43594 1.45448 1.49806 1.50354 1.65232 2.00754 2.55695 3.32079 3.37217 3.41396 3.56916 3.63218 3.75989 3.81557 3.90796 4.10450 4.17897 4.23663 4.28638 4.33979 4.39061 4.42811 4.46422 4.51010 4.60494 4.65050 4.67296 4.73012 4.75300 4.86128 4.88413 4.96248 5.09971 5.11844 5.15715 5.27399 5.30017 5.41525 5.46357 5.50680 5.56943 5.59117 5.62873 5.77410 6.31416 6.50591 7.00931 7.39264 7.53546 8.17878 8.40120 9.30847 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003083 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.211372 B = 9079.783507 C =10365.315273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.178 3.822 11 H 0.043 0.957 12 C -0.114 4.114 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.100 4.100 16 H 0.059 0.941 17 C 0.114 3.886 18 N -0.616 5.616 19 C 0.528 3.472 20 O -0.587 6.587 21 C -0.134 4.134 22 C 0.134 3.866 23 N -0.290 5.290 24 C -0.031 4.031 25 C -0.064 4.064 26 N -0.312 5.312 27 N -0.129 5.129 28 C 0.118 3.882 29 C -0.109 4.109 30 H 0.095 0.905 31 H 0.247 0.753 32 H 0.376 0.624 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.141 0.859 45 H 0.235 0.765 46 H 0.220 0.780 47 H 0.055 0.945 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -18.990 12.725 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.069 3.931 11 H 0.061 0.939 12 C -0.152 4.152 13 C -0.151 4.151 14 C -0.126 4.126 15 C -0.119 4.119 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.348 5.348 19 C 0.317 3.683 20 O -0.468 6.468 21 C -0.175 4.175 22 C 0.013 3.987 23 N -0.084 5.084 24 C -0.183 4.183 25 C -0.222 4.222 26 N -0.178 5.178 27 N -0.109 5.109 28 C -0.004 4.004 29 C -0.130 4.130 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.210 0.790 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.143 0.857 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.158 0.842 45 H 0.251 0.749 46 H 0.237 0.763 47 H 0.073 0.927 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.106 -17.751 12.505 22.556 hybrid contribution 0.931 1.353 -0.194 1.653 sum 7.037 -16.398 12.311 21.679 Atomic orbital electron populations 1.69754 1.06081 1.25546 1.60205 1.25258 0.96077 1.00074 1.04824 0.85546 0.77427 0.81073 0.77776 1.20555 1.22483 1.21655 1.19400 0.90960 0.85278 1.39412 0.91329 1.42545 1.05438 1.00311 1.87892 1.20174 0.94485 0.85788 0.92652 0.93855 1.21723 0.96770 0.98110 0.98605 1.21105 0.97145 1.01113 0.95711 1.20850 1.00145 0.96633 0.94926 1.21741 0.96784 1.00560 0.92858 0.92266 1.21904 0.82810 0.98336 0.97733 1.49293 1.21200 1.57392 1.06903 1.20360 0.83888 0.78710 0.85319 1.90702 1.23794 1.45194 1.87156 1.21723 1.00735 1.05366 0.89643 1.21886 0.97961 1.02960 0.75859 1.47682 1.12283 1.31708 1.16705 1.24491 1.03627 0.98977 0.91169 1.24289 0.90958 1.04196 1.02751 1.75079 1.24689 1.10862 1.07124 1.78316 1.03679 1.22298 1.06568 1.21981 0.98466 0.99440 0.80506 1.22691 0.95338 0.98197 0.96788 0.88692 0.94375 0.79038 0.93143 0.89482 0.94703 0.90040 0.89672 0.90739 0.88126 0.91207 0.85725 0.87661 0.88518 0.84154 0.74852 0.76348 0.92661 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.57 13.06 21.65 0.28 -57.28 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.95 46.71 29.55 68.60 2.03 48.74 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 6 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.22 -11.45 8.05 84.03 0.68 -10.77 16 8 H 0.07 3.55 7.82 -2.91 -0.02 3.53 16 9 N -0.72 -32.76 3.84 -323.82 -1.24 -34.00 16 10 C 0.18 6.13 3.02 44.81 0.14 6.27 16 11 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 12 C -0.11 -3.07 5.51 30.71 0.17 -2.90 16 13 C -0.11 -2.79 5.54 30.06 0.17 -2.62 16 14 C -0.09 -1.85 5.57 29.70 0.17 -1.68 16 15 C -0.10 -2.77 2.24 -10.62 -0.02 -2.79 16 16 H 0.06 2.24 6.67 -2.39 -0.02 2.22 16 17 C 0.11 2.68 6.23 85.82 0.54 3.21 16 18 N -0.62 -18.06 3.38 -812.42 -2.75 -20.80 16 19 C 0.53 14.81 7.86 87.66 0.69 15.50 16 20 O -0.59 -20.59 16.27 -3.04 -0.05 -20.64 16 21 C -0.13 -2.55 5.04 29.85 0.15 -2.40 16 22 C 0.13 2.27 5.74 86.38 0.50 2.77 16 23 N -0.29 -5.39 3.44 -347.74 -1.20 -6.58 16 24 C -0.03 -0.39 11.57 83.49 0.97 0.58 16 25 C -0.06 -1.01 12.05 83.73 1.01 0.00 16 26 N -0.31 -7.95 12.41 -58.26 -0.72 -8.67 16 27 N -0.13 -3.36 12.91 37.02 0.48 -2.88 16 28 C 0.12 4.16 6.45 86.06 0.56 4.71 16 29 C -0.11 -3.20 2.32 -10.24 -0.02 -3.23 16 30 H 0.09 2.30 8.03 -2.38 -0.02 2.28 16 31 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.38 18.56 6.09 -92.71 -0.56 17.99 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.03 1.08 7.03 -2.39 -0.02 1.07 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.37 8.04 -2.39 -0.02 1.35 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.10 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.11 2.19 8.12 -2.39 -0.02 2.17 16 43 H 0.10 1.93 8.10 -2.39 -0.02 1.91 16 44 H 0.14 1.67 8.03 -2.39 -0.02 1.66 16 45 H 0.24 0.55 8.06 -2.91 -0.02 0.52 16 46 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 47 H 0.06 2.48 6.16 -2.39 -0.01 2.47 16 48 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 Total: -1.00 -74.94 380.47 3.36 -71.58 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.40 Total: 27.36 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.13 Total: 3.19 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -5.15 Total: -130.23 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -74.94 3.36 -71.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992669429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.160 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds