Wall clock time and date at job start Tue Mar 31 2020 18:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.92535 * 33.84281 * 10 9 7 12 12 C 1.53844 * 109.94164 * 272.59623 * 10 9 7 13 13 C 1.52528 * 111.65054 * 183.41936 * 12 10 9 14 14 C 1.53807 * 111.71000 * 54.04940 * 13 12 10 15 15 C 1.51623 * 107.02694 * 302.45669 * 14 13 12 16 16 H 1.08998 * 111.26944 * 304.35192 * 15 14 13 17 17 C 1.53365 * 117.09287 * 176.29140 * 15 14 13 18 18 N 1.48657 * 103.76331 * 204.66603 * 17 15 14 19 19 C 1.34778 * 125.78270 * 204.02944 * 18 17 15 20 20 O 1.21281 * 120.00322 * 179.97438 * 19 18 17 21 21 C 1.50698 * 119.99795 * 359.97438 * 19 18 17 22 22 C 1.53005 * 109.47093 * 180.02562 * 21 19 18 23 23 N 1.46508 * 109.47044 * 180.02562 * 22 21 19 24 24 C 1.35310 * 125.86548 * 125.00111 * 23 22 21 25 25 C 1.35347 * 106.17334 * 179.97438 * 24 23 22 26 26 N 1.33774 * 106.49631 * 359.97438 * 25 24 23 27 27 N 1.28630 * 108.88506 * 359.73317 * 26 25 24 28 28 C 1.48237 * 108.43597 * 24.02739 * 18 17 15 29 29 C 1.51433 * 109.93839 * 155.00230 * 10 9 7 30 30 H 1.09002 * 109.87049 * 65.20540 * 29 10 9 31 31 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.04443 * 303.97620 * 12 10 9 34 34 H 1.09002 * 109.04478 * 62.86161 * 12 10 9 35 35 H 1.08999 * 109.03616 * 293.47243 * 13 12 10 36 36 H 1.09010 * 108.97121 * 174.57615 * 13 12 10 37 37 H 1.09003 * 109.94651 * 183.07745 * 14 13 12 38 38 H 1.09000 * 109.94953 * 61.83425 * 14 13 12 39 39 H 1.08994 * 110.76847 * 85.92633 * 17 15 14 40 40 H 1.09001 * 110.30984 * 323.17725 * 17 15 14 41 41 H 1.09004 * 109.47353 * 299.99931 * 21 19 18 42 42 H 1.09002 * 109.47546 * 60.00081 * 21 19 18 43 43 H 1.08999 * 109.46832 * 299.99563 * 22 21 19 44 44 H 1.08998 * 109.47207 * 60.00012 * 22 21 19 45 45 H 1.07998 * 126.91220 * 359.97410 * 24 23 22 46 46 H 1.08001 * 126.75338 * 179.97438 * 25 24 23 47 47 H 1.09009 * 110.17280 * 244.08795 * 28 18 17 48 48 H 1.09005 * 110.23593 * 122.32037 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 2.9815 -3.5530 0.5684 12 6 2.3762 -4.0777 -1.4468 13 6 3.0661 -5.4371 -1.4981 14 6 2.2569 -6.5141 -0.7558 15 6 2.0790 -6.0314 0.6705 16 1 3.0397 -5.8143 1.1372 17 6 1.2213 -6.8992 1.5997 18 7 0.7351 -5.9423 2.6283 19 6 0.3406 -6.2608 3.8771 20 8 -0.0383 -5.3919 4.6335 21 6 0.3703 -7.6967 4.3334 22 6 -0.1242 -7.7829 5.7788 23 7 -0.0947 -9.1788 6.2226 24 6 0.5424 -9.6484 7.3201 25 6 0.3092 -10.9813 7.3499 26 7 -0.4497 -11.2581 6.2835 27 7 -0.6763 -10.1680 5.6395 28 6 0.7577 -4.5785 2.0478 29 6 1.1996 -4.7494 0.6001 30 1 0.3312 -4.9295 -0.0337 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.4475 -4.1286 -2.0150 34 1 3.0283 -3.3307 -1.8996 35 1 4.0512 -5.3534 -1.0393 36 1 3.1835 -5.7358 -2.5399 37 1 2.8005 -7.4588 -0.7634 38 1 1.2834 -6.6404 -1.2296 39 1 1.8219 -7.6842 2.0589 40 1 0.3844 -7.3296 1.0497 41 1 -0.2768 -8.2953 3.6921 42 1 1.3907 -8.0756 4.2750 43 1 0.5226 -7.1843 6.4203 44 1 -1.1447 -7.4042 5.8368 45 1 1.1206 -9.0751 8.0295 46 1 0.6656 -11.6834 8.0891 47 1 1.4692 -3.9524 2.5865 48 1 -0.2374 -4.1354 2.0873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992669432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:55 Heat of formation + Delta-G solvation = 73.724471 kcal Electronic energy + Delta-G solvation = -28683.129767 eV Core-core repulsion = 24775.310290 eV Total energy + Delta-G solvation = -3907.819477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.55254 -40.61465 -38.98913 -35.85841 -35.49674 -34.30094 -31.91729 -31.53108 -31.31718 -30.42033 -28.84453 -26.85403 -26.01526 -24.26653 -23.26267 -22.98169 -21.74737 -20.97852 -20.64447 -19.89629 -19.35295 -18.18278 -17.33770 -16.83206 -16.63472 -16.41542 -15.61536 -15.31915 -15.11422 -14.98026 -14.49335 -14.25414 -13.94551 -13.79750 -13.72558 -13.54699 -13.10562 -12.87272 -12.70438 -12.57289 -12.33453 -12.16981 -11.89693 -11.80771 -11.59391 -11.22114 -11.11807 -10.81941 -10.74113 -10.66003 -10.51542 -10.37288 -10.17075 -10.06027 -10.03149 -9.87741 -9.71920 -9.15281 -8.93568 -8.74998 -7.08412 -6.12483 -3.13428 1.26363 1.90500 2.27419 2.41805 2.81293 3.49713 3.52974 3.70581 3.96348 4.10201 4.17485 4.27235 4.37047 4.57154 4.65645 4.72010 4.75363 4.83694 4.88679 5.00935 5.10466 5.19720 5.22071 5.24692 5.33350 5.43793 5.45895 5.51179 5.57923 5.69277 5.73353 5.77168 5.82650 5.88436 5.94281 5.99619 6.06493 6.17217 6.20469 6.29393 6.36318 6.41085 6.49958 6.74035 6.94125 7.36027 7.77231 7.93703 8.18993 8.72655 9.18299 10.04782 10.19010 11.35515 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.002446 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.262219 B =11443.008518 C =12732.501647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.078 2.922 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.733 5.733 10 C 0.202 3.798 11 H 0.052 0.948 12 C -0.138 4.138 13 C -0.115 4.115 14 C -0.099 4.099 15 C -0.105 4.105 16 H 0.086 0.914 17 C 0.106 3.894 18 N -0.617 5.617 19 C 0.532 3.468 20 O -0.541 6.541 21 C -0.149 4.149 22 C 0.131 3.869 23 N -0.290 5.290 24 C -0.047 4.047 25 C -0.055 4.055 26 N -0.273 5.273 27 N -0.085 5.085 28 C 0.126 3.874 29 C -0.106 4.106 30 H 0.077 0.923 31 H 0.255 0.745 32 H 0.367 0.633 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.191 0.809 46 H 0.190 0.810 47 H 0.075 0.925 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -20.936 8.497 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.375 5.375 10 C 0.091 3.909 11 H 0.070 0.930 12 C -0.179 4.179 13 C -0.153 4.153 14 C -0.137 4.137 15 C -0.124 4.124 16 H 0.104 0.896 17 C -0.016 4.016 18 N -0.351 5.351 19 C 0.319 3.681 20 O -0.419 6.419 21 C -0.190 4.190 22 C 0.009 3.991 23 N -0.084 5.084 24 C -0.198 4.198 25 C -0.212 4.212 26 N -0.139 5.139 27 N -0.065 5.065 28 C 0.005 3.995 29 C -0.126 4.126 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.208 0.792 46 H 0.207 0.793 47 H 0.094 0.906 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.903 -19.178 7.796 21.067 hybrid contribution 0.699 -1.228 0.798 1.622 sum 4.602 -20.406 8.594 22.615 Atomic orbital electron populations 1.70892 1.06044 1.28430 1.53347 1.25742 0.97038 1.00978 1.00382 0.83269 0.74261 0.75767 0.75820 1.21049 1.22278 1.22304 1.19998 0.91910 0.85720 1.48624 0.91809 1.42410 1.04746 1.00670 1.89653 1.19874 0.93748 0.84564 0.92714 0.92955 1.22311 1.00311 0.94893 1.00342 1.21537 0.98963 0.95246 0.99540 1.21297 1.00858 0.98131 0.93454 1.22133 0.98966 0.95706 0.95641 0.89615 1.22205 0.97865 0.91991 0.89540 1.49179 1.64120 1.09949 1.11841 1.19741 0.77674 0.89909 0.80738 1.90768 1.47626 1.50503 1.52974 1.21843 1.04871 0.95940 0.96365 1.21883 1.06132 0.74820 0.96224 1.47584 1.32884 1.10073 1.17843 1.23765 1.04756 0.96671 0.94636 1.23651 1.02880 0.94623 1.00054 1.75133 1.14859 1.18017 1.05921 1.78307 1.17289 0.90087 1.20864 1.21630 1.02477 0.81995 0.93402 1.22209 0.98884 0.96603 0.94879 0.90458 0.93383 0.79984 0.92858 0.91906 0.92484 0.92540 0.91926 0.91544 0.90646 0.90851 0.87084 0.88113 0.86512 0.87084 0.79167 0.79332 0.90617 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.74 13.70 55.49 0.76 -27.98 16 2 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 3 Si 1.08 25.65 29.92 -169.99 -5.09 20.57 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.33 -8.98 9.95 -15.06 -0.15 -9.13 16 8 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 9 N -0.73 -17.29 5.04 -53.77 -0.27 -17.56 16 10 C 0.20 3.65 2.52 -68.28 -0.17 3.48 16 11 H 0.05 1.01 7.99 -51.93 -0.41 0.59 16 12 C -0.14 -2.23 5.47 -26.53 -0.15 -2.38 16 13 C -0.11 -1.37 5.84 -26.55 -0.16 -1.53 16 14 C -0.10 -0.99 5.73 -27.01 -0.15 -1.15 16 15 C -0.10 -1.16 2.50 -89.73 -0.22 -1.38 16 16 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 17 C 0.11 1.02 6.36 -2.66 -0.02 1.01 16 18 N -0.62 -7.80 3.39 -170.68 -0.58 -8.38 16 19 C 0.53 6.66 7.86 -10.99 -0.09 6.57 16 20 O -0.54 -8.81 16.32 5.56 0.09 -8.72 16 21 C -0.15 -1.26 4.86 -27.88 -0.14 -1.40 16 22 C 0.13 1.03 5.74 -4.03 -0.02 1.01 16 23 N -0.29 -2.60 3.44 -61.26 -0.21 -2.81 16 24 C -0.05 -0.33 11.57 -17.05 -0.20 -0.53 16 25 C -0.05 -0.45 12.05 -17.74 -0.21 -0.66 16 26 N -0.27 -3.25 12.41 30.23 0.38 -2.88 16 27 N -0.09 -1.01 12.92 60.35 0.78 -0.23 16 28 C 0.13 1.99 6.52 -3.43 -0.02 1.97 16 29 C -0.11 -1.55 1.81 -90.36 -0.16 -1.71 16 30 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 31 H 0.25 7.64 6.77 -40.82 -0.28 7.37 16 32 H 0.37 9.05 6.64 -40.82 -0.27 8.78 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.66 7.98 -51.93 -0.41 0.25 16 39 H 0.08 0.56 7.54 -51.93 -0.39 0.17 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.11 0.91 8.12 -51.93 -0.42 0.49 16 42 H 0.10 0.71 7.88 -51.93 -0.41 0.30 16 43 H 0.12 0.76 8.02 -51.93 -0.42 0.34 16 44 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 45 H 0.19 0.59 8.06 -52.49 -0.42 0.16 16 46 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.08 1.37 8.08 -51.92 -0.42 0.95 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -34.74 386.77 -7.96 -42.70 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.70 Total: 6.61 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -1.96 Total: -7.16 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.86 Total: -59.83 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.09 Total: 20.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.74 -7.96 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992669432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.428 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds