Wall clock time and date at job start Tue Mar 31 2020 18:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.92535 * 33.84281 * 10 9 7 12 12 C 1.53844 * 109.94164 * 272.59623 * 10 9 7 13 13 C 1.52528 * 111.65054 * 183.41936 * 12 10 9 14 14 C 1.53807 * 111.71000 * 54.04940 * 13 12 10 15 15 C 1.51623 * 107.02694 * 302.45669 * 14 13 12 16 16 H 1.08998 * 111.26944 * 304.35192 * 15 14 13 17 17 C 1.53365 * 117.09287 * 176.29140 * 15 14 13 18 18 N 1.48657 * 103.76331 * 204.66603 * 17 15 14 19 19 C 1.34778 * 125.78270 * 204.02944 * 18 17 15 20 20 O 1.21281 * 120.00322 * 179.97438 * 19 18 17 21 21 C 1.50698 * 119.99795 * 359.97438 * 19 18 17 22 22 C 1.53005 * 109.47093 * 180.02562 * 21 19 18 23 23 N 1.46508 * 109.47044 * 180.02562 * 22 21 19 24 24 C 1.35310 * 125.86548 * 125.00111 * 23 22 21 25 25 C 1.35347 * 106.17334 * 179.97438 * 24 23 22 26 26 N 1.33774 * 106.49631 * 359.97438 * 25 24 23 27 27 N 1.28630 * 108.88506 * 359.73317 * 26 25 24 28 28 C 1.48237 * 108.43597 * 24.02739 * 18 17 15 29 29 C 1.51433 * 109.93839 * 155.00230 * 10 9 7 30 30 H 1.09002 * 109.87049 * 65.20540 * 29 10 9 31 31 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.04443 * 303.97620 * 12 10 9 34 34 H 1.09002 * 109.04478 * 62.86161 * 12 10 9 35 35 H 1.08999 * 109.03616 * 293.47243 * 13 12 10 36 36 H 1.09010 * 108.97121 * 174.57615 * 13 12 10 37 37 H 1.09003 * 109.94651 * 183.07745 * 14 13 12 38 38 H 1.09000 * 109.94953 * 61.83425 * 14 13 12 39 39 H 1.08994 * 110.76847 * 85.92633 * 17 15 14 40 40 H 1.09001 * 110.30984 * 323.17725 * 17 15 14 41 41 H 1.09004 * 109.47353 * 299.99931 * 21 19 18 42 42 H 1.09002 * 109.47546 * 60.00081 * 21 19 18 43 43 H 1.08999 * 109.46832 * 299.99563 * 22 21 19 44 44 H 1.08998 * 109.47207 * 60.00012 * 22 21 19 45 45 H 1.07998 * 126.91220 * 359.97410 * 24 23 22 46 46 H 1.08001 * 126.75338 * 179.97438 * 25 24 23 47 47 H 1.09009 * 110.17280 * 244.08795 * 28 18 17 48 48 H 1.09005 * 110.23593 * 122.32037 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 2.9815 -3.5530 0.5684 12 6 2.3762 -4.0777 -1.4468 13 6 3.0661 -5.4371 -1.4981 14 6 2.2569 -6.5141 -0.7558 15 6 2.0790 -6.0314 0.6705 16 1 3.0397 -5.8143 1.1372 17 6 1.2213 -6.8992 1.5997 18 7 0.7351 -5.9423 2.6283 19 6 0.3406 -6.2608 3.8771 20 8 -0.0383 -5.3919 4.6335 21 6 0.3703 -7.6967 4.3334 22 6 -0.1242 -7.7829 5.7788 23 7 -0.0947 -9.1788 6.2226 24 6 0.5424 -9.6484 7.3201 25 6 0.3092 -10.9813 7.3499 26 7 -0.4497 -11.2581 6.2835 27 7 -0.6763 -10.1680 5.6395 28 6 0.7577 -4.5785 2.0478 29 6 1.1996 -4.7494 0.6001 30 1 0.3312 -4.9295 -0.0337 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.4475 -4.1286 -2.0150 34 1 3.0283 -3.3307 -1.8996 35 1 4.0512 -5.3534 -1.0393 36 1 3.1835 -5.7358 -2.5399 37 1 2.8005 -7.4588 -0.7634 38 1 1.2834 -6.6404 -1.2296 39 1 1.8219 -7.6842 2.0589 40 1 0.3844 -7.3296 1.0497 41 1 -0.2768 -8.2953 3.6921 42 1 1.3907 -8.0756 4.2750 43 1 0.5226 -7.1843 6.4203 44 1 -1.1447 -7.4042 5.8368 45 1 1.1206 -9.0751 8.0295 46 1 0.6656 -11.6834 8.0891 47 1 1.4692 -3.9524 2.5865 48 1 -0.2374 -4.1354 2.0873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992669432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:54 Heat of formation + Delta-G solvation = 49.888154 kcal Electronic energy + Delta-G solvation = -28684.163388 eV Core-core repulsion = 24775.310290 eV Total energy + Delta-G solvation = -3908.853097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.19481 -41.69751 -40.09566 -37.17462 -36.27909 -35.85502 -33.34160 -32.64000 -31.95181 -31.37779 -30.34465 -28.09712 -26.89773 -25.69240 -24.83256 -23.59512 -22.48943 -22.09131 -21.79434 -21.12214 -20.32832 -19.34974 -18.88022 -17.62950 -17.53754 -17.39179 -16.75245 -16.47666 -16.03986 -15.95369 -15.71715 -15.49360 -15.23957 -15.10566 -14.80781 -14.65363 -14.09112 -13.90077 -13.76224 -13.63506 -13.54977 -13.06725 -12.85044 -12.82986 -12.72611 -12.60162 -12.47133 -12.07301 -11.94362 -11.87557 -11.80902 -11.58531 -11.49850 -11.37926 -11.24849 -11.05013 -10.87314 -10.85819 -10.32807 -9.83966 -9.11438 -8.38669 -5.32238 0.65068 1.24904 1.43241 1.55371 1.64336 1.65304 1.81308 1.87424 2.69603 3.16507 3.33650 3.37879 3.42676 3.56557 3.59323 3.68770 3.76041 3.93929 4.12295 4.16825 4.17994 4.23380 4.33811 4.36561 4.38166 4.43405 4.43741 4.52891 4.54824 4.57840 4.60956 4.67578 4.77111 4.83062 4.85842 5.01105 5.02739 5.19368 5.24393 5.29241 5.30695 5.35048 5.42748 5.57623 5.61786 5.62780 6.37617 6.49193 6.93439 7.09528 7.52568 7.99812 8.11316 9.13067 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.002446 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.262219 B =11443.008518 C =12732.501647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.108 4.108 3 Si 1.124 2.876 4 H -0.295 1.295 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.323 4.323 8 H 0.065 0.935 9 N -0.748 5.748 10 C 0.195 3.805 11 H 0.040 0.960 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.092 4.092 15 C -0.090 4.090 16 H 0.085 0.915 17 C 0.108 3.892 18 N -0.618 5.618 19 C 0.529 3.471 20 O -0.586 6.586 21 C -0.132 4.132 22 C 0.132 3.868 23 N -0.290 5.290 24 C -0.034 4.034 25 C -0.064 4.064 26 N -0.311 5.311 27 N -0.124 5.124 28 C 0.133 3.867 29 C -0.102 4.102 30 H 0.076 0.924 31 H 0.243 0.757 32 H 0.357 0.643 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.100 0.900 45 H 0.231 0.769 46 H 0.218 0.782 47 H 0.044 0.956 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -23.835 8.960 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.299 4.299 3 Si 0.949 3.051 4 H -0.221 1.221 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.455 4.455 8 H 0.083 0.917 9 N -0.389 5.389 10 C 0.087 3.913 11 H 0.058 0.942 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.130 4.130 15 C -0.110 4.110 16 H 0.104 0.896 17 C -0.012 4.012 18 N -0.351 5.351 19 C 0.319 3.681 20 O -0.467 6.467 21 C -0.172 4.172 22 C 0.011 3.989 23 N -0.084 5.084 24 C -0.185 4.185 25 C -0.221 4.221 26 N -0.176 5.176 27 N -0.103 5.103 28 C 0.010 3.990 29 C -0.122 4.122 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.189 0.811 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.152 0.848 44 H 0.118 0.882 45 H 0.248 0.752 46 H 0.235 0.765 47 H 0.062 0.938 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.207 -22.169 8.224 24.447 hybrid contribution 0.043 -0.354 0.724 0.807 sum 6.249 -22.524 8.948 25.029 Atomic orbital electron populations 1.70999 1.07202 1.27775 1.56602 1.27112 0.97120 1.04618 1.01015 0.82673 0.73419 0.71902 0.77093 1.22135 1.20596 1.20258 1.20321 0.92130 0.87058 1.45947 0.91722 1.42639 1.04490 1.01886 1.89848 1.20115 0.93379 0.83516 0.94293 0.94198 1.22132 0.99722 0.97222 0.97786 1.21491 0.98967 0.92942 1.01284 1.21295 1.01304 0.98661 0.91692 1.22155 0.98275 0.93434 0.97130 0.89636 1.22449 0.98611 0.91574 0.88607 1.49248 1.64144 1.09017 1.12654 1.20501 0.76318 0.91277 0.80035 1.90748 1.49486 1.52274 1.54217 1.21736 1.06496 0.92378 0.96612 1.21892 1.06003 0.74635 0.96395 1.47655 1.32650 1.09790 1.18270 1.24450 1.03444 0.96591 0.93993 1.24258 1.02218 0.95944 0.99702 1.75079 1.16298 1.18704 1.07537 1.78267 1.19098 0.90712 1.22209 1.21279 0.99768 0.83767 0.94213 1.22018 0.99177 0.97446 0.93559 0.90576 0.94688 0.81098 0.93895 0.94594 0.91795 0.90772 0.88237 0.91066 0.86932 0.89200 0.86396 0.85643 0.84809 0.88178 0.75233 0.76506 0.93774 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.13 13.70 21.65 0.30 -61.84 16 2 C -0.11 -6.31 5.50 84.86 0.47 -5.84 16 3 Si 1.12 52.67 29.92 68.60 2.05 54.73 16 4 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.32 -18.06 9.95 84.03 0.84 -17.22 16 8 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 9 N -0.75 -36.97 5.04 -324.02 -1.63 -38.60 16 10 C 0.20 7.27 2.52 44.76 0.11 7.38 16 11 H 0.04 1.57 7.99 -2.39 -0.02 1.55 16 12 C -0.13 -4.13 5.47 30.72 0.17 -3.97 16 13 C -0.11 -2.30 5.84 30.71 0.18 -2.12 16 14 C -0.09 -1.45 5.73 30.41 0.17 -1.28 16 15 C -0.09 -1.74 2.50 -10.22 -0.03 -1.77 16 16 H 0.09 1.71 8.04 -2.39 -0.02 1.69 16 17 C 0.11 1.69 6.36 86.09 0.55 2.24 16 18 N -0.62 -15.01 3.39 -812.31 -2.75 -17.76 16 19 C 0.53 12.77 7.86 87.66 0.69 13.46 16 20 O -0.59 -19.47 16.32 -3.03 -0.05 -19.52 16 21 C -0.13 -1.89 4.86 29.85 0.15 -1.75 16 22 C 0.13 1.84 5.74 86.38 0.50 2.33 16 23 N -0.29 -4.55 3.44 -347.72 -1.20 -5.74 16 24 C -0.03 -0.36 11.57 83.49 0.97 0.61 16 25 C -0.06 -0.88 12.05 83.73 1.01 0.13 16 26 N -0.31 -7.00 12.41 -58.26 -0.72 -7.73 16 27 N -0.12 -2.75 12.92 37.02 0.48 -2.27 16 28 C 0.13 4.38 6.52 85.82 0.56 4.94 16 29 C -0.10 -3.00 1.81 -10.62 -0.02 -3.02 16 30 H 0.08 2.28 7.92 -2.39 -0.02 2.26 16 31 H 0.24 15.40 6.77 -92.70 -0.63 14.77 16 32 H 0.36 18.80 6.64 -92.71 -0.62 18.18 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.13 7.98 -2.39 -0.02 1.11 16 39 H 0.11 1.04 7.54 -2.39 -0.02 1.02 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.12 1.62 8.12 -2.38 -0.02 1.60 16 42 H 0.13 1.24 7.88 -2.39 -0.02 1.22 16 43 H 0.13 1.41 8.02 -2.39 -0.02 1.39 16 44 H 0.10 1.64 8.10 -2.39 -0.02 1.62 16 45 H 0.23 0.36 8.06 -2.91 -0.02 0.33 16 46 H 0.22 1.38 8.06 -2.91 -0.02 1.35 16 47 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16 48 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -81.81 386.77 3.26 -78.55 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.48 Total: 26.07 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 6.31 Total: -5.88 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -5.53 Total: -133.94 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 52.67 SS G_CDS: 2.05 Total: 54.73 kcal Total: -81.81 3.26 -78.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992669432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.438 kcal (2) G-P(sol) polarization free energy of solvation -81.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds