Wall clock time and date at job start Tue Mar 31 2020 18:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99481 * 2 1 4 4 H 1.48505 * 109.47109 * 269.99474 * 3 2 1 5 5 H 1.48493 * 109.47375 * 30.00022 * 3 2 1 6 6 H 1.48503 * 109.47052 * 149.99862 * 3 2 1 7 7 C 1.38815 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99657 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00482 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00211 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.93050 * 329.96089 * 10 9 7 12 12 C 1.53812 * 109.94320 * 208.79337 * 10 9 7 13 13 C 1.52534 * 111.64444 * 298.19712 * 12 10 9 14 14 C 1.53825 * 111.66632 * 305.84371 * 13 12 10 15 15 C 1.51440 * 106.98549 * 57.31253 * 14 13 12 16 16 H 1.08996 * 110.22333 * 54.33695 * 15 14 13 17 17 C 1.52334 * 117.44808 * 181.19955 * 15 14 13 18 18 N 1.48234 * 105.86628 * 145.30417 * 17 15 14 19 19 C 1.34783 * 125.78229 * 176.81722 * 18 17 15 20 20 O 1.21282 * 119.99724 * 179.97438 * 19 18 17 21 21 C 1.50701 * 119.99954 * 359.97438 * 19 18 17 22 22 C 1.52998 * 109.47060 * 180.02562 * 21 19 18 23 23 C 1.50695 * 109.47354 * 179.97438 * 22 21 19 24 24 C 1.35352 * 126.91492 * 84.99459 * 23 22 21 25 25 N 1.33769 * 106.49849 * 179.97438 * 24 23 22 26 26 N 1.28639 * 108.88632 * 359.97438 * 25 24 23 27 27 N 1.28717 * 110.17703 * 359.76015 * 26 25 24 28 28 H 0.96998 * 125.86566 * 180.23323 * 27 26 25 29 29 C 1.48665 * 108.43528 * 356.80902 * 18 17 15 30 30 C 1.51619 * 109.94485 * 91.21813 * 10 9 7 31 31 H 1.08997 * 110.50067 * 175.70433 * 30 10 9 32 32 H 0.96991 * 120.00552 * 359.97438 * 1 2 3 33 33 H 0.97006 * 119.99514 * 359.97438 * 9 7 2 34 34 H 1.09002 * 109.03521 * 58.73222 * 12 10 9 35 35 H 1.08999 * 109.03463 * 177.66281 * 12 10 9 36 36 H 1.08994 * 109.04017 * 66.48388 * 13 12 10 37 37 H 1.08998 * 109.03786 * 185.36070 * 13 12 10 38 38 H 1.09002 * 109.99732 * 297.92506 * 14 13 12 39 39 H 1.09009 * 110.00464 * 176.69723 * 14 13 12 40 40 H 1.09000 * 110.16920 * 26.19605 * 17 15 14 41 41 H 1.09004 * 110.22916 * 264.43202 * 17 15 14 42 42 H 1.08999 * 109.46642 * 300.00222 * 21 19 18 43 43 H 1.09001 * 109.46795 * 59.99925 * 21 19 18 44 44 H 1.09002 * 109.47196 * 300.00293 * 22 21 19 45 45 H 1.09003 * 109.47028 * 60.00024 * 22 21 19 46 46 H 1.08001 * 126.75038 * 359.97438 * 24 23 22 47 47 H 1.08999 * 110.62905 * 217.13432 * 29 18 17 48 48 H 1.09000 * 110.61869 * 94.11535 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6568 0.0005 11 1 3.0123 -3.5350 -0.5124 12 6 1.2233 -4.7447 -0.6959 13 6 -0.0917 -4.9984 0.0344 14 6 0.1374 -5.3217 1.5207 15 6 0.8963 -4.1540 2.1156 16 1 0.3644 -3.2221 1.9240 17 6 1.2761 -4.2405 3.5883 18 7 2.5895 -3.5638 3.7085 19 6 3.2677 -3.3573 4.8548 20 8 4.3393 -2.7897 4.8315 21 6 2.6946 -3.8318 6.1653 22 6 3.6552 -3.4744 7.3013 23 6 3.0818 -3.9483 8.6118 24 6 3.1961 -5.1852 9.1494 25 7 2.5369 -5.1561 10.3130 26 7 2.0473 -3.9790 10.4849 27 7 2.3546 -3.2209 9.4911 28 1 2.1052 -2.2891 9.3887 29 6 3.0320 -3.1515 2.3504 30 6 2.2906 -4.1198 1.4255 31 1 2.7679 -5.0997 1.4354 32 1 -0.4850 0.8399 0.0004 33 1 0.3557 -2.3881 0.0005 34 1 1.0078 -4.4286 -1.7166 35 1 1.7983 -5.6703 -0.7245 36 1 -0.7194 -4.1109 -0.0450 37 1 -0.6035 -5.8378 -0.4362 38 1 0.7247 -6.2348 1.6174 39 1 -0.8200 -5.4402 2.0284 40 1 1.3611 -5.2833 3.8939 41 1 0.5326 -3.7294 4.2000 42 1 1.7329 -3.3483 6.3375 43 1 2.5570 -4.9125 6.1316 44 1 4.6170 -3.9575 7.1292 45 1 3.7923 -2.3936 7.3347 46 1 3.7170 -6.0296 8.7228 47 1 4.1104 -3.2700 2.2454 48 1 2.7359 -2.1226 2.1461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992824728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:20 Heat of formation + Delta-G solvation = 62.299597 kcal Electronic energy + Delta-G solvation = -29233.625231 eV Core-core repulsion = 25325.310334 eV Total energy + Delta-G solvation = -3908.314897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.57180 -40.33859 -38.75666 -35.53893 -34.65276 -33.71513 -33.41816 -31.46811 -30.89231 -29.84625 -28.91361 -26.97331 -25.62585 -24.12573 -23.26613 -23.10528 -21.85566 -20.93986 -20.78999 -19.09188 -18.75026 -18.52195 -17.21107 -16.85239 -16.35121 -16.06975 -15.48121 -14.89421 -14.82499 -14.57179 -14.41782 -14.20257 -14.02151 -13.60406 -13.38280 -13.01300 -12.74650 -12.65285 -12.41345 -12.30524 -11.99485 -11.83481 -11.66639 -11.56841 -11.41186 -11.19705 -11.09082 -10.92600 -10.86202 -10.79928 -10.44761 -10.36023 -10.17696 -9.96904 -9.79145 -9.57946 -9.43197 -9.38413 -8.95941 -8.33954 -7.05066 -5.85703 -3.13671 1.25032 2.26932 2.44834 2.76144 3.13879 3.38780 3.45570 3.46453 4.10455 4.35703 4.52719 4.58148 4.64504 4.68465 4.83173 4.95039 5.03678 5.09554 5.17211 5.23903 5.33208 5.45760 5.50293 5.58555 5.64009 5.66519 5.68636 5.74786 5.79434 5.85500 5.90330 5.93766 5.99435 6.05894 6.20040 6.27271 6.33058 6.43372 6.53049 6.57612 6.59953 6.71062 6.81282 6.81520 7.04305 7.63760 7.75370 8.16263 8.30002 8.33203 9.45322 10.01726 10.36613 11.36392 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.003063 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.011027 B = 9140.065960 C =10499.705718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.187 3.813 11 H 0.055 0.945 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.097 4.097 15 C -0.107 4.107 16 H 0.105 0.895 17 C 0.113 3.887 18 N -0.615 5.615 19 C 0.524 3.476 20 O -0.550 6.550 21 C -0.132 4.132 22 C -0.034 4.034 23 C -0.003 4.003 24 C -0.048 4.048 25 N -0.267 5.267 26 N -0.085 5.085 27 N -0.389 5.389 28 H 0.448 0.552 29 C 0.115 3.885 30 C -0.119 4.119 31 H 0.065 0.935 32 H 0.255 0.745 33 H 0.385 0.615 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.191 0.809 47 H 0.064 0.936 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -11.976 10.093 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.076 3.924 11 H 0.073 0.927 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.135 4.135 15 C -0.126 4.126 16 H 0.123 0.877 17 C -0.009 4.009 18 N -0.348 5.348 19 C 0.312 3.688 20 O -0.428 6.428 21 C -0.173 4.173 22 C -0.074 4.074 23 C -0.137 4.137 24 C -0.205 4.205 25 N -0.134 5.134 26 N -0.065 5.065 27 N -0.110 5.110 28 H 0.294 0.706 29 C -0.005 4.005 30 C -0.141 4.141 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.220 0.780 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.208 0.792 47 H 0.082 0.918 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.053 -11.738 11.542 16.590 hybrid contribution 0.389 1.619 -1.080 1.985 sum 2.442 -10.119 10.462 14.759 Atomic orbital electron populations 1.69640 1.05054 1.25702 1.57492 1.24694 0.95434 0.97570 1.02875 0.86287 0.78888 0.84103 0.77569 1.21720 1.21881 1.20629 1.19215 0.90984 0.84038 1.42728 0.91118 1.42452 1.05756 0.99481 1.88040 1.19918 0.94906 0.86566 0.90997 0.92726 1.21816 0.96239 0.98325 0.99688 1.21453 0.98037 1.01268 0.94433 1.21240 0.99390 0.96870 0.95989 1.21863 0.97708 1.01274 0.91771 0.87690 1.21732 0.84400 0.96321 0.98488 1.49259 1.20877 1.57306 1.07344 1.20037 0.84706 0.79618 0.84446 1.90709 1.22065 1.43348 1.86714 1.21623 1.00077 1.03586 0.91977 1.19901 0.98816 1.03100 0.85540 1.22382 1.01349 0.93289 0.96686 1.23448 1.05133 0.97781 0.94122 1.75102 1.10611 1.11298 1.16408 1.78300 1.20251 0.97742 1.10197 1.45174 1.36605 1.14626 1.14598 0.70596 1.22235 0.98341 1.01281 0.78677 1.22811 0.94736 0.97891 0.98660 0.91696 0.93519 0.77997 0.91852 0.92827 0.91394 0.92867 0.92386 0.92300 0.92047 0.91747 0.89081 0.88436 0.87739 0.89386 0.79174 0.91768 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -5.99 8.10 -15.06 -0.12 -6.11 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -15.58 3.83 -53.70 -0.21 -15.78 16 10 C 0.19 3.24 3.01 -68.21 -0.21 3.03 16 11 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 12 C -0.12 -1.76 5.52 -26.55 -0.15 -1.91 16 13 C -0.11 -1.52 5.57 -26.54 -0.15 -1.66 16 14 C -0.10 -1.16 5.71 -27.09 -0.15 -1.31 16 15 C -0.11 -1.52 2.23 -90.35 -0.20 -1.72 16 16 H 0.11 1.89 6.56 -51.93 -0.34 1.55 16 17 C 0.11 1.41 6.23 -3.43 -0.02 1.39 16 18 N -0.61 -9.13 3.38 -170.86 -0.58 -9.71 16 19 C 0.52 7.47 7.86 -10.98 -0.09 7.38 16 20 O -0.55 -9.81 16.28 5.56 0.09 -9.72 16 21 C -0.13 -1.23 4.89 -27.88 -0.14 -1.36 16 22 C -0.03 -0.28 5.07 -27.89 -0.14 -0.42 16 23 C 0.00 -0.03 6.56 -82.09 -0.54 -0.56 16 24 C -0.05 -0.45 11.99 -17.74 -0.21 -0.66 16 25 N -0.27 -3.26 12.41 30.23 0.38 -2.89 16 26 N -0.08 -0.98 13.38 60.35 0.81 -0.17 16 27 N -0.39 -3.27 6.98 33.54 0.23 -3.04 16 28 H 0.45 2.31 8.96 -190.40 -1.71 0.60 16 29 C 0.12 2.00 6.44 -2.82 -0.02 1.98 16 30 C -0.12 -1.82 2.33 -89.89 -0.21 -2.03 16 31 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.38 8.98 5.96 -40.82 -0.24 8.74 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.05 7.02 -51.93 -0.36 0.69 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 39 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 45 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 46 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 48 H 0.10 2.17 6.14 -51.93 -0.32 1.85 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -31.79 379.57 -9.13 -40.92 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.84 Total: 7.94 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.44 Total: -4.32 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 1.36 Total: -57.14 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.79 -9.13 -40.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992824728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.217 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds