Wall clock time and date at job start Tue Mar 31 2020 18:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99481 * 2 1 4 4 H 1.48505 * 109.47109 * 269.99474 * 3 2 1 5 5 H 1.48493 * 109.47375 * 30.00022 * 3 2 1 6 6 H 1.48503 * 109.47052 * 149.99862 * 3 2 1 7 7 C 1.38815 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99657 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00482 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00211 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.93050 * 329.96089 * 10 9 7 12 12 C 1.53812 * 109.94320 * 208.79337 * 10 9 7 13 13 C 1.52534 * 111.64444 * 298.19712 * 12 10 9 14 14 C 1.53825 * 111.66632 * 305.84371 * 13 12 10 15 15 C 1.51440 * 106.98549 * 57.31253 * 14 13 12 16 16 H 1.08996 * 110.22333 * 54.33695 * 15 14 13 17 17 C 1.52334 * 117.44808 * 181.19955 * 15 14 13 18 18 N 1.48234 * 105.86628 * 145.30417 * 17 15 14 19 19 C 1.34783 * 125.78229 * 176.81722 * 18 17 15 20 20 O 1.21282 * 119.99724 * 179.97438 * 19 18 17 21 21 C 1.50701 * 119.99954 * 359.97438 * 19 18 17 22 22 C 1.52998 * 109.47060 * 180.02562 * 21 19 18 23 23 C 1.50695 * 109.47354 * 179.97438 * 22 21 19 24 24 C 1.35352 * 126.91492 * 84.99459 * 23 22 21 25 25 N 1.33769 * 106.49849 * 179.97438 * 24 23 22 26 26 N 1.28639 * 108.88632 * 359.97438 * 25 24 23 27 27 N 1.28717 * 110.17703 * 359.76015 * 26 25 24 28 28 H 0.96998 * 125.86566 * 180.23323 * 27 26 25 29 29 C 1.48665 * 108.43528 * 356.80902 * 18 17 15 30 30 C 1.51619 * 109.94485 * 91.21813 * 10 9 7 31 31 H 1.08997 * 110.50067 * 175.70433 * 30 10 9 32 32 H 0.96991 * 120.00552 * 359.97438 * 1 2 3 33 33 H 0.97006 * 119.99514 * 359.97438 * 9 7 2 34 34 H 1.09002 * 109.03521 * 58.73222 * 12 10 9 35 35 H 1.08999 * 109.03463 * 177.66281 * 12 10 9 36 36 H 1.08994 * 109.04017 * 66.48388 * 13 12 10 37 37 H 1.08998 * 109.03786 * 185.36070 * 13 12 10 38 38 H 1.09002 * 109.99732 * 297.92506 * 14 13 12 39 39 H 1.09009 * 110.00464 * 176.69723 * 14 13 12 40 40 H 1.09000 * 110.16920 * 26.19605 * 17 15 14 41 41 H 1.09004 * 110.22916 * 264.43202 * 17 15 14 42 42 H 1.08999 * 109.46642 * 300.00222 * 21 19 18 43 43 H 1.09001 * 109.46795 * 59.99925 * 21 19 18 44 44 H 1.09002 * 109.47196 * 300.00293 * 22 21 19 45 45 H 1.09003 * 109.47028 * 60.00024 * 22 21 19 46 46 H 1.08001 * 126.75038 * 359.97438 * 24 23 22 47 47 H 1.08999 * 110.62905 * 217.13432 * 29 18 17 48 48 H 1.09000 * 110.61869 * 94.11535 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6568 0.0005 11 1 3.0123 -3.5350 -0.5124 12 6 1.2233 -4.7447 -0.6959 13 6 -0.0917 -4.9984 0.0344 14 6 0.1374 -5.3217 1.5207 15 6 0.8963 -4.1540 2.1156 16 1 0.3644 -3.2221 1.9240 17 6 1.2761 -4.2405 3.5883 18 7 2.5895 -3.5638 3.7085 19 6 3.2677 -3.3573 4.8548 20 8 4.3393 -2.7897 4.8315 21 6 2.6946 -3.8318 6.1653 22 6 3.6552 -3.4744 7.3013 23 6 3.0818 -3.9483 8.6118 24 6 3.1961 -5.1852 9.1494 25 7 2.5369 -5.1561 10.3130 26 7 2.0473 -3.9790 10.4849 27 7 2.3546 -3.2209 9.4911 28 1 2.1052 -2.2891 9.3887 29 6 3.0320 -3.1515 2.3504 30 6 2.2906 -4.1198 1.4255 31 1 2.7679 -5.0997 1.4354 32 1 -0.4850 0.8399 0.0004 33 1 0.3557 -2.3881 0.0005 34 1 1.0078 -4.4286 -1.7166 35 1 1.7983 -5.6703 -0.7245 36 1 -0.7194 -4.1109 -0.0450 37 1 -0.6035 -5.8378 -0.4362 38 1 0.7247 -6.2348 1.6174 39 1 -0.8200 -5.4402 2.0284 40 1 1.3611 -5.2833 3.8939 41 1 0.5326 -3.7294 4.2000 42 1 1.7329 -3.3483 6.3375 43 1 2.5570 -4.9125 6.1316 44 1 4.6170 -3.9575 7.1292 45 1 3.7923 -2.3936 7.3347 46 1 3.7170 -6.0296 8.7228 47 1 4.1104 -3.2700 2.2454 48 1 2.7359 -2.1226 2.1461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992824728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:19 Heat of formation + Delta-G solvation = 40.919262 kcal Electronic energy + Delta-G solvation = -29234.552352 eV Core-core repulsion = 25325.310334 eV Total energy + Delta-G solvation = -3909.242018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.29810 -41.53421 -39.94034 -36.83048 -35.47336 -35.32645 -34.15348 -33.06657 -31.95715 -30.86871 -30.34465 -28.22713 -26.58794 -25.63402 -24.55064 -23.95289 -22.59699 -22.12167 -21.93819 -20.24125 -20.02879 -19.24052 -19.08830 -17.90181 -17.25356 -17.06452 -16.57677 -16.50223 -15.85834 -15.79082 -15.57704 -15.28539 -15.20620 -14.84367 -14.38956 -14.35899 -14.05541 -13.65932 -13.49817 -13.42391 -13.17300 -12.97800 -12.84634 -12.74938 -12.64999 -12.62396 -12.38446 -12.31543 -12.13979 -11.82451 -11.78449 -11.60670 -11.59189 -11.33281 -11.09475 -10.91351 -10.86250 -10.55134 -10.15642 -9.57142 -8.92512 -7.91770 -5.15219 0.54352 1.43240 1.45364 1.51496 1.52903 1.66745 1.82489 2.07969 2.56057 3.30266 3.41289 3.54257 3.66409 3.81058 3.87334 3.91632 4.00944 4.10295 4.13526 4.27488 4.33224 4.41801 4.46248 4.51055 4.53285 4.58856 4.69896 4.70918 4.74517 4.80346 4.89267 4.98234 4.99189 5.02839 5.12790 5.15215 5.20718 5.24485 5.31587 5.43397 5.47099 5.51772 5.59156 5.60743 5.80458 5.95198 6.31955 6.64167 7.17868 7.39774 7.42334 8.18196 8.40978 9.31283 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.003063 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.011027 B = 9140.065960 C =10499.705718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.950 3.050 4 H -0.290 1.290 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.217 4.217 8 H 0.067 0.933 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.042 0.958 12 C -0.115 4.115 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.100 4.100 16 H 0.059 0.941 17 C 0.115 3.885 18 N -0.619 5.619 19 C 0.517 3.483 20 O -0.593 6.593 21 C -0.119 4.119 22 C -0.025 4.025 23 C 0.008 3.992 24 C -0.049 4.049 25 N -0.301 5.301 26 N -0.111 5.111 27 N -0.377 5.377 28 H 0.461 0.539 29 C 0.116 3.884 30 C -0.109 4.109 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.377 0.623 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.217 0.783 47 H 0.052 0.948 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -14.967 10.988 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.782 3.218 4 H -0.217 1.217 5 H -0.226 1.226 6 H -0.205 1.205 7 C -0.349 4.349 8 H 0.085 0.915 9 N -0.361 5.361 10 C 0.068 3.932 11 H 0.060 0.940 12 C -0.153 4.153 13 C -0.151 4.151 14 C -0.125 4.125 15 C -0.119 4.119 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.352 5.352 19 C 0.308 3.692 20 O -0.475 6.475 21 C -0.159 4.159 22 C -0.064 4.064 23 C -0.127 4.127 24 C -0.207 4.207 25 N -0.167 5.167 26 N -0.091 5.091 27 N -0.100 5.100 28 H 0.309 0.691 29 C -0.006 4.006 30 C -0.130 4.130 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.210 0.790 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.234 0.766 47 H 0.071 0.929 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.146 -14.763 12.456 19.435 hybrid contribution 0.462 2.518 -1.406 2.921 sum 2.608 -12.245 11.050 16.698 Atomic orbital electron populations 1.69759 1.06029 1.25450 1.60314 1.25244 0.96089 1.00006 1.04866 0.85470 0.77756 0.81369 0.77232 1.21706 1.22646 1.20460 1.19435 0.90916 0.85325 1.39259 0.91488 1.42548 1.05441 1.00280 1.87870 1.20188 0.94482 0.85773 0.92784 0.94003 1.21738 0.96868 0.98194 0.98520 1.21444 0.96832 1.00873 0.95904 1.21223 1.00358 0.96524 0.94424 1.21758 0.96491 1.00508 0.93156 0.92237 1.21893 0.83162 0.98361 0.97240 1.49361 1.21859 1.57438 1.06493 1.20951 0.84089 0.78568 0.85596 1.90689 1.24155 1.45211 1.87411 1.21614 1.00212 1.05227 0.88857 1.19799 0.98723 1.02878 0.85049 1.22331 1.00916 0.92986 0.96446 1.23958 1.04548 0.98891 0.93286 1.75078 1.11856 1.11852 1.17949 1.78261 1.21373 0.98140 1.11342 1.45221 1.35754 1.15131 1.13886 0.69115 1.21907 0.97868 0.99407 0.81399 1.22625 0.95661 0.98187 0.96573 0.88807 0.94377 0.78973 0.93332 0.89631 0.94569 0.90282 0.89544 0.90581 0.88068 0.90843 0.87718 0.85592 0.87460 0.89860 0.76627 0.92927 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.59 13.06 21.65 0.28 -56.31 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.95 46.03 29.55 68.60 2.03 48.06 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.22 -11.29 8.10 84.04 0.68 -10.60 16 8 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 9 N -0.72 -32.34 3.83 -323.80 -1.24 -33.58 16 10 C 0.18 6.05 3.01 44.81 0.13 6.19 16 11 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 12 C -0.11 -3.08 5.52 30.71 0.17 -2.91 16 13 C -0.11 -2.72 5.57 30.72 0.17 -2.55 16 14 C -0.09 -1.74 5.71 30.36 0.17 -1.57 16 15 C -0.10 -2.63 2.23 -10.62 -0.02 -2.65 16 16 H 0.06 2.15 6.56 -2.39 -0.02 2.14 16 17 C 0.11 2.47 6.23 85.83 0.54 3.00 16 18 N -0.62 -17.37 3.38 -812.87 -2.75 -20.12 16 19 C 0.52 13.85 7.86 87.66 0.69 14.54 16 20 O -0.59 -20.95 16.28 -3.04 -0.05 -21.00 16 21 C -0.12 -1.80 4.89 29.85 0.15 -1.66 16 22 C -0.02 -0.34 5.07 29.85 0.15 -0.19 16 23 C 0.01 0.12 6.56 41.35 0.27 0.39 16 24 C -0.05 -0.79 11.99 83.73 1.00 0.21 16 25 N -0.30 -6.89 12.41 -58.26 -0.72 -7.61 16 26 N -0.11 -2.42 13.38 37.02 0.50 -1.93 16 27 N -0.38 -5.62 6.98 -47.79 -0.33 -5.96 16 28 H 0.46 3.95 8.96 -219.96 -1.97 1.98 16 29 C 0.12 4.07 6.44 85.98 0.55 4.62 16 30 C -0.11 -3.17 2.33 -10.32 -0.02 -3.19 16 31 H 0.09 2.27 8.06 -2.39 -0.02 2.25 16 32 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.38 18.28 5.96 -92.70 -0.55 17.73 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.04 1.10 7.02 -2.39 -0.02 1.09 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.32 8.06 -2.39 -0.02 1.30 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.10 1.46 8.08 -2.39 -0.02 1.44 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.11 1.52 8.10 -2.39 -0.02 1.50 16 45 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 46 H 0.22 2.06 8.06 -2.91 -0.02 2.04 16 47 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 48 H 0.05 2.40 6.14 -2.39 -0.01 2.39 16 Total: -1.00 -73.57 379.57 1.27 -72.30 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -1.54 Total: 25.90 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.10 Total: 0.24 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -4.27 Total: -125.50 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.57 1.27 -72.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992824728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.216 kcal (2) G-P(sol) polarization free energy of solvation -73.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds