Wall clock time and date at job start Tue Mar 31 2020 18:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48497 * 109.46951 * 269.99358 * 3 2 1 5 5 H 1.48498 * 109.47488 * 29.99928 * 3 2 1 6 6 H 1.48507 * 109.47078 * 149.99480 * 3 2 1 7 7 C 1.38810 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00073 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99959 * 179.97438 * 9 7 2 11 11 H 1.08998 * 107.80225 * 38.33764 * 10 9 7 12 12 C 1.49277 * 108.02026 * 282.77341 * 10 9 7 13 13 C 1.51837 * 112.64563 * 280.40256 * 12 10 9 14 14 C 1.52243 * 110.43393 * 306.93311 * 13 12 10 15 15 C 1.52921 * 110.24774 * 61.74542 * 14 13 12 16 16 H 1.09002 * 111.94781 * 67.92191 * 15 14 13 17 17 C 1.55136 * 107.01554 * 191.99561 * 15 14 13 18 18 N 1.47320 * 106.87276 * 92.00693 * 17 15 14 19 19 C 1.34776 * 125.73928 * 179.91455 * 18 17 15 20 20 O 1.21282 * 119.99940 * 179.69107 * 19 18 17 21 21 C 1.50698 * 120.00035 * 359.69992 * 19 18 17 22 22 C 1.53006 * 109.47184 * 179.97438 * 21 19 18 23 23 C 1.50698 * 109.47184 * 180.02562 * 22 21 19 24 24 C 1.35354 * 126.90826 * 274.68582 * 23 22 21 25 25 N 1.33775 * 106.49608 * 179.90726 * 24 23 22 26 26 N 1.28634 * 108.88419 * 0.36229 * 25 24 23 27 27 N 1.28714 * 110.17959 * 359.76727 * 26 25 24 28 28 H 0.96998 * 125.86913 * 179.97438 * 27 26 25 29 29 C 1.47810 * 108.52078 * 359.65727 * 18 17 15 30 30 C 1.49678 * 108.11803 * 155.00452 * 10 9 7 31 31 H 1.09004 * 109.18703 * 319.78389 * 30 10 9 32 32 H 0.97000 * 120.00438 * 0.02562 * 1 2 3 33 33 H 0.97002 * 120.00503 * 0.02562 * 9 7 2 34 34 H 1.09001 * 108.87552 * 159.64903 * 12 10 9 35 35 H 1.08999 * 109.02025 * 41.26109 * 12 10 9 36 36 H 1.08996 * 109.31269 * 186.63007 * 13 12 10 37 37 H 1.09003 * 109.30423 * 67.22433 * 13 12 10 38 38 H 1.09004 * 109.34448 * 301.50562 * 14 13 12 39 39 H 1.09004 * 109.21309 * 181.90766 * 14 13 12 40 40 H 1.09011 * 110.08007 * 332.59953 * 17 15 14 41 41 H 1.08997 * 109.87912 * 211.31366 * 17 15 14 42 42 H 1.09001 * 109.47612 * 59.99945 * 21 19 18 43 43 H 1.09001 * 109.47122 * 299.99777 * 21 19 18 44 44 H 1.09001 * 109.47002 * 299.99404 * 22 21 19 45 45 H 1.08993 * 109.46955 * 59.99842 * 22 21 19 46 46 H 1.08001 * 126.75217 * 0.03069 * 24 23 22 47 47 H 1.08997 * 110.51474 * 143.23908 * 29 18 17 48 48 H 1.09002 * 110.50956 * 265.95414 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4403 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9302 -3.5381 0.6446 12 6 2.5597 -3.9004 -1.3831 13 6 1.4865 -4.4510 -2.3053 14 6 0.8390 -5.6842 -1.6906 15 6 0.1577 -5.3218 -0.3704 16 1 -0.7079 -4.6770 -0.5222 17 6 -0.2025 -6.6554 0.3356 18 7 0.9311 -6.9944 1.2133 19 6 1.0154 -8.0811 2.0061 20 8 2.0042 -8.2613 2.6849 21 6 -0.1189 -9.0724 2.0489 22 6 0.2285 -10.2034 3.0191 23 6 -0.9055 -11.1950 3.0615 24 6 -2.0155 -11.1279 3.8331 25 7 -2.7451 -12.2112 3.5441 26 7 -2.1241 -12.9072 2.6582 27 7 -1.0162 -12.3344 2.3401 28 1 -0.3712 -12.6632 1.6946 29 6 1.9631 -5.9456 1.0735 30 6 1.1747 -4.7043 0.6039 31 1 0.6416 -4.2780 1.4537 32 1 -0.4851 0.8400 -0.0004 33 1 0.3555 -2.3881 0.0016 34 1 3.3840 -4.6123 -1.3394 35 1 2.9306 -2.9626 -1.7967 36 1 1.9356 -4.7185 -3.2617 37 1 0.7255 -3.6879 -2.4686 38 1 1.6031 -6.4397 -1.5071 39 1 0.0969 -6.0823 -2.3826 40 1 -0.3493 -7.4427 -0.4040 41 1 -1.1079 -6.5279 0.9289 42 1 -0.2788 -9.4850 1.0528 43 1 -1.0268 -8.5713 2.3847 44 1 1.1363 -10.7044 2.6829 45 1 0.3886 -9.7911 4.0153 46 1 -2.2643 -10.3513 4.5412 47 1 2.4439 -5.7525 2.0325 48 1 2.7021 -6.2341 0.3259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992824730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:23 Heat of formation + Delta-G solvation = 60.606130 kcal Electronic energy + Delta-G solvation = -28691.133085 eV Core-core repulsion = 24782.744754 eV Total energy + Delta-G solvation = -3908.388331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.68072 -40.69240 -38.93954 -35.83116 -34.82971 -33.63094 -33.53519 -31.65891 -31.14719 -30.12686 -29.21436 -26.80324 -25.79818 -24.24174 -23.34845 -22.88089 -22.15321 -21.89318 -21.13503 -19.32332 -18.66844 -18.04975 -17.26057 -16.98936 -16.47963 -16.40367 -15.72762 -15.30838 -14.78991 -14.62198 -14.39582 -14.20181 -14.12594 -13.73271 -13.56245 -13.34674 -12.98511 -12.90689 -12.62017 -12.54499 -12.12229 -11.92770 -11.76338 -11.74041 -11.40308 -11.24491 -11.20799 -10.97641 -10.96367 -10.87997 -10.75185 -10.21837 -10.12059 -10.06957 -9.88390 -9.68272 -9.57200 -9.51776 -8.89422 -8.71003 -6.97937 -5.79878 -3.07918 1.13426 2.17284 2.32325 2.46128 2.85037 3.40716 3.46707 3.47751 3.94356 4.22264 4.40119 4.47407 4.52083 4.53867 4.60010 4.77913 4.84594 4.88660 5.02735 5.06537 5.20243 5.30548 5.35088 5.46357 5.50775 5.52379 5.54498 5.62260 5.71360 5.74277 5.75630 5.80063 5.87832 5.95181 6.04342 6.15226 6.25280 6.31525 6.35402 6.41505 6.45465 6.74440 6.76538 6.94472 7.12630 7.41283 7.67193 7.98915 8.06213 8.38818 9.50467 10.07172 10.42566 11.42763 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.002172 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.089074 B =12889.808843 C =13107.578116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.188 3.812 11 H 0.039 0.961 12 C -0.126 4.126 13 C -0.110 4.110 14 C -0.108 4.108 15 C -0.089 4.089 16 H 0.101 0.899 17 C 0.100 3.900 18 N -0.614 5.614 19 C 0.527 3.473 20 O -0.546 6.546 21 C -0.133 4.133 22 C -0.033 4.033 23 C -0.006 4.006 24 C -0.045 4.045 25 N -0.265 5.265 26 N -0.084 5.084 27 N -0.390 5.390 28 H 0.447 0.553 29 C 0.113 3.887 30 C -0.089 4.089 31 H 0.085 0.915 32 H 0.254 0.746 33 H 0.382 0.618 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.192 0.808 47 H 0.078 0.922 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 -21.449 0.512 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.368 5.368 10 C 0.078 3.922 11 H 0.057 0.943 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.108 4.108 16 H 0.119 0.881 17 C -0.023 4.023 18 N -0.348 5.348 19 C 0.316 3.684 20 O -0.424 6.424 21 C -0.173 4.173 22 C -0.073 4.073 23 C -0.140 4.140 24 C -0.202 4.202 25 N -0.133 5.133 26 N -0.064 5.064 27 N -0.111 5.111 28 H 0.293 0.707 29 C -0.009 4.009 30 C -0.108 4.108 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.209 0.791 47 H 0.097 0.903 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.274 -22.658 0.807 22.708 hybrid contribution 1.190 1.777 -0.398 2.175 sum -0.085 -20.881 0.409 20.886 Atomic orbital electron populations 1.69646 1.05049 1.25579 1.57876 1.24701 0.95480 0.97560 1.03175 0.86238 0.78702 0.84079 0.77465 1.21827 1.21852 1.20822 1.19202 0.90958 0.84110 1.42384 0.91271 1.42553 1.05642 0.99455 1.89185 1.18606 0.93785 0.86078 0.93723 0.94277 1.21209 0.96973 1.00640 0.97750 1.20997 0.99186 0.96955 0.97641 1.21439 0.99225 0.98321 0.95600 1.22133 0.99439 0.94199 0.95012 0.88121 1.22468 0.89097 0.97813 0.92917 1.48667 1.20277 1.23074 1.42748 1.20103 0.88289 0.81137 0.78886 1.90724 1.33163 1.75457 1.43025 1.21639 0.98570 0.95624 1.01511 1.19889 0.93079 0.91894 1.02419 1.22339 1.01344 0.91878 0.98474 1.23494 0.92714 0.99983 1.04016 1.75126 1.24579 1.04424 1.09123 1.78311 0.94182 1.20624 1.13264 1.45159 1.17973 1.16643 1.31288 0.70703 1.22336 0.90737 0.86181 1.01634 1.21549 0.96464 0.94104 0.98702 0.89688 0.93586 0.78421 0.94473 0.90893 0.93236 0.91380 0.92478 0.92472 0.91362 0.91322 0.89000 0.88046 0.89459 0.87628 0.79078 0.90328 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.16 9.33 -15.06 -0.14 -6.30 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.73 -16.60 4.99 -56.85 -0.28 -16.88 16 10 C 0.19 3.34 2.24 -71.40 -0.16 3.18 16 11 H 0.04 0.75 7.96 -51.93 -0.41 0.33 16 12 C -0.13 -2.05 5.33 -29.15 -0.16 -2.21 16 13 C -0.11 -1.57 5.89 -27.71 -0.16 -1.74 16 14 C -0.11 -1.25 4.71 -27.16 -0.13 -1.38 16 15 C -0.09 -1.07 3.51 -89.13 -0.31 -1.38 16 16 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 17 C 0.10 0.95 5.89 -2.46 -0.01 0.93 16 18 N -0.61 -6.89 3.34 -169.79 -0.57 -7.46 16 19 C 0.53 5.77 7.85 -10.99 -0.09 5.69 16 20 O -0.55 -7.89 16.26 5.56 0.09 -7.80 16 21 C -0.13 -0.89 4.88 -27.88 -0.14 -1.02 16 22 C -0.03 -0.20 5.07 -27.88 -0.14 -0.34 16 23 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 24 C -0.04 -0.37 11.99 -17.73 -0.21 -0.58 16 25 N -0.27 -2.95 12.41 30.24 0.38 -2.58 16 26 N -0.08 -0.85 13.38 60.35 0.81 -0.04 16 27 N -0.39 -2.57 6.98 33.54 0.23 -2.34 16 28 H 0.45 1.35 8.96 -190.40 -1.71 -0.35 16 29 C 0.11 1.49 5.84 -2.60 -0.02 1.47 16 30 C -0.09 -1.29 2.23 -91.14 -0.20 -1.49 16 31 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.38 9.30 7.73 -40.82 -0.32 8.99 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 1.39 7.53 -51.93 -0.39 1.00 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.53 7.76 -51.92 -0.40 0.12 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 45 H 0.11 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 48 H 0.07 0.90 7.42 -51.93 -0.39 0.52 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -33.06 384.13 -9.37 -42.43 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -9.01 Total: 4.65 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.50 Total: -6.23 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 1.29 Total: -55.62 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.06 -9.37 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992824730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.032 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds