Wall clock time and date at job start Tue Mar 31 2020 18:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48497 * 109.46951 * 269.99358 * 3 2 1 5 5 H 1.48498 * 109.47488 * 29.99928 * 3 2 1 6 6 H 1.48507 * 109.47078 * 149.99480 * 3 2 1 7 7 C 1.38810 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00073 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99959 * 179.97438 * 9 7 2 11 11 H 1.08998 * 107.80225 * 38.33764 * 10 9 7 12 12 C 1.49277 * 108.02026 * 282.77341 * 10 9 7 13 13 C 1.51837 * 112.64563 * 280.40256 * 12 10 9 14 14 C 1.52243 * 110.43393 * 306.93311 * 13 12 10 15 15 C 1.52921 * 110.24774 * 61.74542 * 14 13 12 16 16 H 1.09002 * 111.94781 * 67.92191 * 15 14 13 17 17 C 1.55136 * 107.01554 * 191.99561 * 15 14 13 18 18 N 1.47320 * 106.87276 * 92.00693 * 17 15 14 19 19 C 1.34776 * 125.73928 * 179.91455 * 18 17 15 20 20 O 1.21282 * 119.99940 * 179.69107 * 19 18 17 21 21 C 1.50698 * 120.00035 * 359.69992 * 19 18 17 22 22 C 1.53006 * 109.47184 * 179.97438 * 21 19 18 23 23 C 1.50698 * 109.47184 * 180.02562 * 22 21 19 24 24 C 1.35354 * 126.90826 * 274.68582 * 23 22 21 25 25 N 1.33775 * 106.49608 * 179.90726 * 24 23 22 26 26 N 1.28634 * 108.88419 * 0.36229 * 25 24 23 27 27 N 1.28714 * 110.17959 * 359.76727 * 26 25 24 28 28 H 0.96998 * 125.86913 * 179.97438 * 27 26 25 29 29 C 1.47810 * 108.52078 * 359.65727 * 18 17 15 30 30 C 1.49678 * 108.11803 * 155.00452 * 10 9 7 31 31 H 1.09004 * 109.18703 * 319.78389 * 30 10 9 32 32 H 0.97000 * 120.00438 * 0.02562 * 1 2 3 33 33 H 0.97002 * 120.00503 * 0.02562 * 9 7 2 34 34 H 1.09001 * 108.87552 * 159.64903 * 12 10 9 35 35 H 1.08999 * 109.02025 * 41.26109 * 12 10 9 36 36 H 1.08996 * 109.31269 * 186.63007 * 13 12 10 37 37 H 1.09003 * 109.30423 * 67.22433 * 13 12 10 38 38 H 1.09004 * 109.34448 * 301.50562 * 14 13 12 39 39 H 1.09004 * 109.21309 * 181.90766 * 14 13 12 40 40 H 1.09011 * 110.08007 * 332.59953 * 17 15 14 41 41 H 1.08997 * 109.87912 * 211.31366 * 17 15 14 42 42 H 1.09001 * 109.47612 * 59.99945 * 21 19 18 43 43 H 1.09001 * 109.47122 * 299.99777 * 21 19 18 44 44 H 1.09001 * 109.47002 * 299.99404 * 22 21 19 45 45 H 1.08993 * 109.46955 * 59.99842 * 22 21 19 46 46 H 1.08001 * 126.75217 * 0.03069 * 24 23 22 47 47 H 1.08997 * 110.51474 * 143.23908 * 29 18 17 48 48 H 1.09002 * 110.50956 * 265.95414 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4403 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9302 -3.5381 0.6446 12 6 2.5597 -3.9004 -1.3831 13 6 1.4865 -4.4510 -2.3053 14 6 0.8390 -5.6842 -1.6906 15 6 0.1577 -5.3218 -0.3704 16 1 -0.7079 -4.6770 -0.5222 17 6 -0.2025 -6.6554 0.3356 18 7 0.9311 -6.9944 1.2133 19 6 1.0154 -8.0811 2.0061 20 8 2.0042 -8.2613 2.6849 21 6 -0.1189 -9.0724 2.0489 22 6 0.2285 -10.2034 3.0191 23 6 -0.9055 -11.1950 3.0615 24 6 -2.0155 -11.1279 3.8331 25 7 -2.7451 -12.2112 3.5441 26 7 -2.1241 -12.9072 2.6582 27 7 -1.0162 -12.3344 2.3401 28 1 -0.3712 -12.6632 1.6946 29 6 1.9631 -5.9456 1.0735 30 6 1.1747 -4.7043 0.6039 31 1 0.6416 -4.2780 1.4537 32 1 -0.4851 0.8400 -0.0004 33 1 0.3555 -2.3881 0.0016 34 1 3.3840 -4.6123 -1.3394 35 1 2.9306 -2.9626 -1.7967 36 1 1.9356 -4.7185 -3.2617 37 1 0.7255 -3.6879 -2.4686 38 1 1.6031 -6.4397 -1.5071 39 1 0.0969 -6.0823 -2.3826 40 1 -0.3493 -7.4427 -0.4040 41 1 -1.1079 -6.5279 0.9289 42 1 -0.2788 -9.4850 1.0528 43 1 -1.0268 -8.5713 2.3847 44 1 1.1363 -10.7044 2.6829 45 1 0.3886 -9.7911 4.0153 46 1 -2.2643 -10.3513 4.5412 47 1 2.4439 -5.7525 2.0325 48 1 2.7021 -6.2341 0.3259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992824730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:22 Heat of formation + Delta-G solvation = 37.914097 kcal Electronic energy + Delta-G solvation = -28692.117086 eV Core-core repulsion = 24782.744754 eV Total energy + Delta-G solvation = -3909.372331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.28054 -41.70562 -39.95473 -37.11656 -35.44728 -35.17354 -34.13854 -33.24882 -32.14864 -31.03327 -30.51701 -28.02973 -26.66326 -25.66607 -24.19706 -23.91947 -23.29382 -22.50237 -22.31037 -20.15540 -19.29388 -19.21362 -19.12821 -17.96356 -17.36313 -17.11592 -16.69862 -16.37606 -16.16491 -15.53868 -15.43434 -15.37274 -15.14485 -14.94304 -14.80347 -14.34015 -14.11990 -13.86593 -13.68066 -13.37098 -13.17154 -13.02362 -12.82169 -12.74134 -12.64830 -12.59940 -12.34974 -12.27310 -12.16437 -11.93964 -11.77903 -11.77147 -11.57968 -11.26608 -11.19779 -10.92612 -10.87533 -10.68091 -10.14310 -9.62216 -8.93798 -7.90979 -5.16816 0.56537 1.47566 1.47773 1.53783 1.55839 1.64757 1.84182 2.04917 2.57609 3.29731 3.42358 3.52400 3.55807 3.69378 3.81031 3.88388 4.02019 4.09373 4.11806 4.25383 4.27722 4.30510 4.39890 4.44934 4.49336 4.58735 4.59937 4.66918 4.72124 4.82580 4.86507 4.90288 4.94805 5.02666 5.05739 5.10261 5.16669 5.21100 5.24935 5.31389 5.43834 5.53249 5.53706 5.69300 5.75450 6.00310 6.32228 6.57399 7.15199 7.38885 7.44312 8.15936 8.39678 9.32277 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.002172 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.089074 B =12889.808843 C =13107.578116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.963 3.037 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.229 4.229 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.189 3.811 11 H 0.021 0.979 12 C -0.121 4.121 13 C -0.107 4.107 14 C -0.100 4.100 15 C -0.089 4.089 16 H 0.090 0.910 17 C 0.107 3.893 18 N -0.615 5.615 19 C 0.525 3.475 20 O -0.586 6.586 21 C -0.123 4.123 22 C -0.025 4.025 23 C 0.010 3.990 24 C -0.055 4.055 25 N -0.304 5.304 26 N -0.111 5.111 27 N -0.373 5.373 28 H 0.462 0.538 29 C 0.122 3.878 30 C -0.084 4.084 31 H 0.060 0.940 32 H 0.249 0.751 33 H 0.373 0.627 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.211 0.789 47 H 0.059 0.941 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -23.521 -0.367 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.793 3.207 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.199 1.199 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.081 3.919 11 H 0.039 0.961 12 C -0.161 4.161 13 C -0.144 4.144 14 C -0.137 4.137 15 C -0.108 4.108 16 H 0.108 0.892 17 C -0.015 4.015 18 N -0.348 5.348 19 C 0.316 3.684 20 O -0.466 6.466 21 C -0.163 4.163 22 C -0.065 4.065 23 C -0.125 4.125 24 C -0.213 4.213 25 N -0.170 5.170 26 N -0.091 5.091 27 N -0.097 5.097 28 H 0.311 0.689 29 C -0.002 4.002 30 C -0.104 4.104 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.205 0.795 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.228 0.772 47 H 0.078 0.922 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.109 -24.789 -0.099 24.814 hybrid contribution 1.259 2.416 -0.109 2.727 sum 0.150 -22.373 -0.208 22.374 Atomic orbital electron populations 1.69785 1.06279 1.25687 1.60042 1.25401 0.96290 1.00536 1.04463 0.85287 0.77738 0.80400 0.77255 1.21687 1.22476 1.19874 1.19521 0.91175 0.85408 1.40054 0.91239 1.42718 1.05344 1.00485 1.88980 1.18803 0.93304 0.85185 0.94565 0.96098 1.21061 0.98493 0.99828 0.96723 1.20959 0.97815 0.97477 0.98186 1.21405 0.99947 0.96955 0.95378 1.22100 0.98201 0.95373 0.95110 0.89199 1.22537 0.88707 0.96929 0.93348 1.48723 1.20153 1.22693 1.43263 1.20834 0.88731 0.81174 0.77669 1.90714 1.35087 1.76343 1.44495 1.21646 0.97000 0.94553 1.03087 1.19820 0.92837 0.91537 1.02263 1.22330 1.00786 0.91649 0.97709 1.23943 0.92898 0.99844 1.04571 1.75093 1.25999 1.05741 1.10169 1.78255 0.95444 1.21383 1.14024 1.45177 1.17360 1.16191 1.30931 0.68883 1.22069 0.91152 0.86223 1.00723 1.21294 0.96705 0.93875 0.98496 0.92103 0.94256 0.79505 0.92082 0.94232 0.91465 0.94314 0.91189 0.89808 0.88023 0.89777 0.86481 0.86484 0.88920 0.88010 0.77213 0.92237 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.57 13.06 21.65 0.28 -57.28 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.96 45.67 29.55 68.60 2.03 47.70 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.23 -12.31 9.33 84.03 0.78 -11.53 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 9 N -0.73 -34.63 4.99 -333.76 -1.67 -36.29 16 10 C 0.19 6.84 2.24 42.74 0.10 6.94 16 11 H 0.02 0.82 7.96 -2.39 -0.02 0.80 16 12 C -0.12 -3.93 5.33 29.02 0.15 -3.77 16 13 C -0.11 -2.89 5.89 29.96 0.18 -2.71 16 14 C -0.10 -1.97 4.71 30.32 0.14 -1.83 16 15 C -0.09 -1.95 3.51 -9.83 -0.03 -1.99 16 16 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 17 C 0.11 1.60 5.89 86.95 0.51 2.12 16 18 N -0.62 -12.09 3.34 -809.49 -2.70 -14.79 16 19 C 0.53 10.00 7.85 87.66 0.69 10.69 16 20 O -0.59 -15.97 16.26 -3.04 -0.05 -16.02 16 21 C -0.12 -1.14 4.88 29.85 0.15 -0.99 16 22 C -0.02 -0.22 5.07 29.85 0.15 -0.07 16 23 C 0.01 0.11 6.56 41.36 0.27 0.38 16 24 C -0.05 -0.79 11.99 83.73 1.00 0.21 16 25 N -0.30 -6.42 12.41 -58.25 -0.72 -7.14 16 26 N -0.11 -2.10 13.38 37.02 0.50 -1.61 16 27 N -0.37 -4.02 6.98 -47.79 -0.33 -4.36 16 28 H 0.46 1.52 8.96 -219.96 -1.97 -0.45 16 29 C 0.12 3.05 5.84 86.59 0.51 3.56 16 30 C -0.08 -2.41 2.23 -11.13 -0.02 -2.44 16 31 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.37 18.83 7.73 -92.71 -0.72 18.12 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.53 7.53 -2.39 -0.02 1.51 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.26 6.99 -2.38 -0.02 1.25 16 39 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.10 0.96 7.76 -2.38 -0.02 0.94 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 42 H 0.12 0.58 8.14 -2.39 -0.02 0.57 16 43 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 0.80 8.10 -2.39 -0.02 0.78 16 45 H 0.10 1.08 8.10 -2.39 -0.02 1.06 16 46 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 47 H 0.06 1.71 8.05 -2.39 -0.02 1.69 16 48 H 0.08 1.82 7.42 -2.39 -0.02 1.80 16 Total: -1.00 -74.63 384.13 0.66 -73.97 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -1.71 Total: 20.98 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.04 Total: -5.16 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -4.65 Total: -121.47 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.05 Total: -16.02 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -74.63 0.66 -73.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992824730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.884 kcal (2) G-P(sol) polarization free energy of solvation -74.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds