Wall clock time and date at job start Tue Mar 31 2020 18:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00471 * 2 1 4 4 H 1.48497 * 109.47529 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46966 * 300.00615 * 3 2 1 6 6 H 1.48501 * 109.46780 * 60.00103 * 3 2 1 7 7 C 1.38816 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00143 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00201 * 179.97438 * 9 7 2 11 11 H 1.08996 * 108.10518 * 324.06882 * 10 9 7 12 12 C 1.51559 * 108.21822 * 207.06941 * 10 9 7 13 13 C 1.52768 * 110.48012 * 193.19622 * 12 10 9 14 14 C 1.52837 * 108.34095 * 61.36607 * 13 12 10 15 15 C 1.52895 * 109.85637 * 294.29115 * 14 13 12 16 16 H 1.08999 * 111.09544 * 286.11289 * 15 14 13 17 17 C 1.55193 * 106.99013 * 164.49830 * 15 14 13 18 18 N 1.47391 * 104.99830 * 272.60295 * 17 15 14 19 19 C 1.34778 * 126.13843 * 149.17701 * 18 17 15 20 20 O 1.21283 * 119.99843 * 180.02562 * 19 18 17 21 21 C 1.50697 * 119.99771 * 0.02562 * 19 18 17 22 22 C 1.53004 * 109.46644 * 179.97438 * 21 19 18 23 23 C 1.50709 * 109.46948 * 179.97438 * 22 21 19 24 24 C 1.35345 * 126.91056 * 274.68624 * 23 22 21 25 25 N 1.33775 * 106.49311 * 179.90927 * 24 23 22 26 26 N 1.28634 * 108.88404 * 0.36406 * 25 24 23 27 27 N 1.28717 * 110.17894 * 359.77076 * 26 25 24 28 28 H 0.96998 * 125.86428 * 179.97438 * 27 26 25 29 29 C 1.47253 * 107.72190 * 329.20197 * 18 17 15 30 30 C 1.49037 * 108.21684 * 80.88242 * 10 9 7 31 31 H 1.09002 * 105.89729 * 272.96826 * 30 10 9 32 32 H 0.96994 * 119.99592 * 359.97438 * 1 2 3 33 33 H 0.97003 * 119.99314 * 359.97438 * 9 7 2 34 34 H 1.09007 * 109.29821 * 72.89302 * 12 10 9 35 35 H 1.09000 * 109.30826 * 313.51371 * 12 10 9 36 36 H 1.08997 * 109.69433 * 301.64963 * 13 12 10 37 37 H 1.09003 * 109.69043 * 181.07243 * 13 12 10 38 38 H 1.08994 * 109.40640 * 174.17370 * 14 13 12 39 39 H 1.08993 * 109.33928 * 54.36808 * 14 13 12 40 40 H 1.09001 * 110.33841 * 31.48457 * 17 15 14 41 41 H 1.09000 * 110.33933 * 153.72523 * 17 15 14 42 42 H 1.09001 * 109.47576 * 299.99575 * 21 19 18 43 43 H 1.08996 * 109.47126 * 60.00551 * 21 19 18 44 44 H 1.08994 * 109.47290 * 300.00157 * 22 21 19 45 45 H 1.09003 * 109.46967 * 60.00139 * 22 21 19 46 46 H 1.08000 * 126.75733 * 0.03518 * 24 23 22 47 47 H 1.09003 * 109.96667 * 258.65719 * 29 18 17 48 48 H 1.08990 * 110.00397 * 137.41042 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9534 -3.5305 -0.6102 12 6 1.1843 -4.7079 -0.6566 13 6 1.7454 -6.1053 -0.3995 14 6 1.7493 -6.3520 1.1088 15 6 2.7314 -5.3975 1.7885 16 1 3.7626 -5.6977 1.6027 17 6 2.4048 -5.4154 3.3056 18 7 1.3617 -4.3894 3.4834 19 6 0.3790 -4.4064 4.4056 20 8 -0.4246 -3.4992 4.4523 21 6 0.2789 -5.5526 5.3789 22 6 -0.9137 -5.3277 6.3106 23 6 -1.0143 -6.4742 7.2835 24 6 -1.6361 -7.6593 7.0817 25 7 -1.4734 -8.3695 8.2036 26 7 -0.8023 -7.6675 9.0471 27 7 -0.5063 -6.5235 8.5366 28 1 -0.0054 -5.8180 8.9750 29 6 1.5855 -3.3427 2.4721 30 6 2.4863 -3.9488 1.3957 31 1 3.4438 -3.4444 1.5260 32 1 -0.4849 0.8400 0.0004 33 1 0.3555 -2.3880 0.0002 34 1 1.1467 -4.5267 -1.7308 35 1 0.1757 -4.6437 -0.2480 36 1 2.7630 -6.1691 -0.7848 37 1 1.1185 -6.8490 -0.8916 38 1 2.0489 -7.3812 1.3066 39 1 0.7479 -6.1838 1.5047 40 1 2.0271 -6.3945 3.6003 41 1 3.2906 -5.1596 3.8869 42 1 0.1410 -6.4842 4.8301 43 1 1.1940 -5.6099 5.9681 44 1 -0.7755 -4.3961 6.8593 45 1 -1.8291 -5.2700 5.7216 46 1 -2.1590 -7.9712 6.1896 47 1 2.0772 -2.4834 2.9282 48 1 0.6351 -3.0382 2.0339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992824731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:26 Heat of formation + Delta-G solvation = 65.090807 kcal Electronic energy + Delta-G solvation = -29276.215865 eV Core-core repulsion = 25368.022004 eV Total energy + Delta-G solvation = -3908.193861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.59172 -40.44708 -38.65999 -35.55372 -34.68337 -34.07547 -33.43751 -31.64165 -31.05504 -30.01158 -28.68661 -26.84809 -25.67994 -24.04678 -23.40225 -23.19710 -21.88832 -21.48862 -20.98899 -19.05306 -18.55206 -18.34181 -17.14590 -16.88702 -16.36228 -16.19249 -15.36326 -15.28248 -14.96068 -14.63036 -14.42796 -14.11221 -13.78193 -13.64179 -13.31646 -13.22664 -12.83920 -12.70988 -12.58462 -12.15925 -11.97825 -11.94540 -11.78035 -11.61489 -11.41186 -11.10361 -10.97863 -10.93104 -10.91202 -10.87408 -10.78949 -10.31179 -10.11684 -10.07034 -9.77850 -9.56571 -9.44827 -9.32797 -8.92728 -8.36443 -7.00028 -5.78560 -3.08487 1.23040 2.25612 2.42191 2.76346 3.17094 3.41084 3.46230 3.49142 4.09973 4.35081 4.53429 4.57087 4.59168 4.66425 4.74955 4.82527 4.95620 4.99131 5.13443 5.17909 5.31558 5.34702 5.38944 5.46159 5.52712 5.64345 5.66825 5.68212 5.71752 5.75736 5.84696 5.85291 5.99576 6.11011 6.19560 6.32359 6.37788 6.41804 6.44819 6.49684 6.50881 6.75406 6.83918 6.96705 7.04562 7.67726 7.77187 8.14410 8.33128 8.38914 9.50542 10.06441 10.40735 11.43459 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.002929 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.682886 B = 9557.158797 C =10849.500459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.190 3.810 11 H 0.044 0.956 12 C -0.119 4.119 13 C -0.114 4.114 14 C -0.109 4.109 15 C -0.088 4.088 16 H 0.086 0.914 17 C 0.100 3.900 18 N -0.616 5.616 19 C 0.522 3.478 20 O -0.536 6.536 21 C -0.131 4.131 22 C -0.035 4.035 23 C -0.003 4.003 24 C -0.047 4.047 25 N -0.267 5.267 26 N -0.086 5.086 27 N -0.390 5.390 28 H 0.448 0.552 29 C 0.132 3.868 30 C -0.100 4.100 31 H 0.055 0.945 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.192 0.808 47 H 0.062 0.938 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -16.309 9.726 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.080 3.920 11 H 0.062 0.938 12 C -0.157 4.157 13 C -0.152 4.152 14 C -0.147 4.147 15 C -0.108 4.108 16 H 0.105 0.895 17 C -0.024 4.024 18 N -0.349 5.349 19 C 0.310 3.690 20 O -0.413 6.413 21 C -0.172 4.172 22 C -0.075 4.075 23 C -0.137 4.137 24 C -0.204 4.204 25 N -0.134 5.134 26 N -0.066 5.066 27 N -0.111 5.111 28 H 0.293 0.707 29 C 0.011 3.989 30 C -0.122 4.122 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.209 0.791 47 H 0.080 0.920 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.247 -16.669 10.992 20.229 hybrid contribution 0.631 2.212 -0.594 2.375 sum 3.878 -14.457 10.398 18.225 Atomic orbital electron populations 1.69662 1.05044 1.25586 1.57150 1.24728 0.95430 0.97594 1.02797 0.86202 0.78766 0.84495 0.77204 1.20641 1.21902 1.21899 1.19213 0.90835 0.84068 1.43218 0.91300 1.42648 1.05763 0.99655 1.88523 1.18969 0.94901 0.86916 0.91229 0.93773 1.21431 0.99810 0.93746 1.00710 1.21396 1.00998 0.97221 0.95572 1.21527 0.99514 0.97684 0.95963 1.21828 0.99526 0.96232 0.93221 0.89537 1.22541 0.90937 0.91730 0.97175 1.48713 1.28293 1.24552 1.33384 1.20032 0.80240 0.87570 0.81163 1.90774 1.40622 1.38251 1.71607 1.21627 0.99588 0.98762 0.97230 1.19918 1.00352 0.93215 0.93993 1.22385 1.02574 1.00492 0.88221 1.23471 1.05369 0.91731 0.99813 1.75107 1.12637 1.25106 1.00516 1.78294 1.15275 0.91451 1.21567 1.45159 1.39091 1.15229 1.11616 0.70685 1.21788 1.02321 0.88441 0.86362 1.21196 0.99878 0.93049 0.98090 0.92687 0.93502 0.78100 0.91979 0.92259 0.92087 0.92385 0.92539 0.91930 0.90851 0.91859 0.88387 0.89311 0.89374 0.87550 0.79109 0.91992 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.35 9.72 -15.06 -0.15 -6.50 16 8 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.72 -16.86 3.40 -56.05 -0.19 -17.05 16 10 C 0.19 3.41 2.68 -70.61 -0.19 3.22 16 11 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 12 C -0.12 -1.82 5.38 -27.58 -0.15 -1.97 16 13 C -0.11 -1.33 5.94 -26.93 -0.16 -1.49 16 14 C -0.11 -1.18 4.98 -26.87 -0.13 -1.31 16 15 C -0.09 -1.01 3.38 -89.98 -0.30 -1.31 16 16 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 17 C 0.10 1.03 6.12 -2.39 -0.01 1.02 16 18 N -0.62 -8.70 3.30 -171.07 -0.56 -9.26 16 19 C 0.52 7.35 7.86 -10.99 -0.09 7.26 16 20 O -0.54 -10.05 16.33 5.56 0.09 -9.96 16 21 C -0.13 -1.13 4.64 -27.88 -0.13 -1.26 16 22 C -0.03 -0.28 5.07 -27.88 -0.14 -0.43 16 23 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 24 C -0.05 -0.43 11.99 -17.74 -0.21 -0.64 16 25 N -0.27 -3.17 12.41 30.23 0.38 -2.80 16 26 N -0.09 -0.95 13.38 60.35 0.81 -0.14 16 27 N -0.39 -3.05 6.98 33.54 0.23 -2.82 16 28 H 0.45 1.96 8.96 -190.40 -1.71 0.25 16 29 C 0.13 2.39 5.93 -3.69 -0.02 2.37 16 30 C -0.10 -1.57 2.22 -93.09 -0.21 -1.78 16 31 H 0.05 0.91 8.02 -51.93 -0.42 0.49 16 32 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.38 9.82 7.36 -40.82 -0.30 9.52 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.98 7.98 -51.93 -0.41 0.57 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 40 H 0.07 0.59 6.99 -51.93 -0.36 0.22 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.70 7.83 -51.93 -0.41 0.30 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 46 H 0.19 1.26 8.06 -52.49 -0.42 0.83 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.09 2.06 6.69 -51.93 -0.35 1.71 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -33.76 383.07 -9.28 -43.05 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.98 Total: 6.70 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.53 Total: -3.72 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 1.39 Total: -58.84 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.76 -9.28 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992824731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.136 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds