Wall clock time and date at job start Tue Mar 31 2020 18:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00471 * 2 1 4 4 H 1.48497 * 109.47529 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46966 * 300.00615 * 3 2 1 6 6 H 1.48501 * 109.46780 * 60.00103 * 3 2 1 7 7 C 1.38816 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00143 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00201 * 179.97438 * 9 7 2 11 11 H 1.08996 * 108.10518 * 324.06882 * 10 9 7 12 12 C 1.51559 * 108.21822 * 207.06941 * 10 9 7 13 13 C 1.52768 * 110.48012 * 193.19622 * 12 10 9 14 14 C 1.52837 * 108.34095 * 61.36607 * 13 12 10 15 15 C 1.52895 * 109.85637 * 294.29115 * 14 13 12 16 16 H 1.08999 * 111.09544 * 286.11289 * 15 14 13 17 17 C 1.55193 * 106.99013 * 164.49830 * 15 14 13 18 18 N 1.47391 * 104.99830 * 272.60295 * 17 15 14 19 19 C 1.34778 * 126.13843 * 149.17701 * 18 17 15 20 20 O 1.21283 * 119.99843 * 180.02562 * 19 18 17 21 21 C 1.50697 * 119.99771 * 0.02562 * 19 18 17 22 22 C 1.53004 * 109.46644 * 179.97438 * 21 19 18 23 23 C 1.50709 * 109.46948 * 179.97438 * 22 21 19 24 24 C 1.35345 * 126.91056 * 274.68624 * 23 22 21 25 25 N 1.33775 * 106.49311 * 179.90927 * 24 23 22 26 26 N 1.28634 * 108.88404 * 0.36406 * 25 24 23 27 27 N 1.28717 * 110.17894 * 359.77076 * 26 25 24 28 28 H 0.96998 * 125.86428 * 179.97438 * 27 26 25 29 29 C 1.47253 * 107.72190 * 329.20197 * 18 17 15 30 30 C 1.49037 * 108.21684 * 80.88242 * 10 9 7 31 31 H 1.09002 * 105.89729 * 272.96826 * 30 10 9 32 32 H 0.96994 * 119.99592 * 359.97438 * 1 2 3 33 33 H 0.97003 * 119.99314 * 359.97438 * 9 7 2 34 34 H 1.09007 * 109.29821 * 72.89302 * 12 10 9 35 35 H 1.09000 * 109.30826 * 313.51371 * 12 10 9 36 36 H 1.08997 * 109.69433 * 301.64963 * 13 12 10 37 37 H 1.09003 * 109.69043 * 181.07243 * 13 12 10 38 38 H 1.08994 * 109.40640 * 174.17370 * 14 13 12 39 39 H 1.08993 * 109.33928 * 54.36808 * 14 13 12 40 40 H 1.09001 * 110.33841 * 31.48457 * 17 15 14 41 41 H 1.09000 * 110.33933 * 153.72523 * 17 15 14 42 42 H 1.09001 * 109.47576 * 299.99575 * 21 19 18 43 43 H 1.08996 * 109.47126 * 60.00551 * 21 19 18 44 44 H 1.08994 * 109.47290 * 300.00157 * 22 21 19 45 45 H 1.09003 * 109.46967 * 60.00139 * 22 21 19 46 46 H 1.08000 * 126.75733 * 0.03518 * 24 23 22 47 47 H 1.09003 * 109.96667 * 258.65719 * 29 18 17 48 48 H 1.08990 * 110.00397 * 137.41042 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9534 -3.5305 -0.6102 12 6 1.1843 -4.7079 -0.6566 13 6 1.7454 -6.1053 -0.3995 14 6 1.7493 -6.3520 1.1088 15 6 2.7314 -5.3975 1.7885 16 1 3.7626 -5.6977 1.6027 17 6 2.4048 -5.4154 3.3056 18 7 1.3617 -4.3894 3.4834 19 6 0.3790 -4.4064 4.4056 20 8 -0.4246 -3.4992 4.4523 21 6 0.2789 -5.5526 5.3789 22 6 -0.9137 -5.3277 6.3106 23 6 -1.0143 -6.4742 7.2835 24 6 -1.6361 -7.6593 7.0817 25 7 -1.4734 -8.3695 8.2036 26 7 -0.8023 -7.6675 9.0471 27 7 -0.5063 -6.5235 8.5366 28 1 -0.0054 -5.8180 8.9750 29 6 1.5855 -3.3427 2.4721 30 6 2.4863 -3.9488 1.3957 31 1 3.4438 -3.4444 1.5260 32 1 -0.4849 0.8400 0.0004 33 1 0.3555 -2.3880 0.0002 34 1 1.1467 -4.5267 -1.7308 35 1 0.1757 -4.6437 -0.2480 36 1 2.7630 -6.1691 -0.7848 37 1 1.1185 -6.8490 -0.8916 38 1 2.0489 -7.3812 1.3066 39 1 0.7479 -6.1838 1.5047 40 1 2.0271 -6.3945 3.6003 41 1 3.2906 -5.1596 3.8869 42 1 0.1410 -6.4842 4.8301 43 1 1.1940 -5.6099 5.9681 44 1 -0.7755 -4.3961 6.8593 45 1 -1.8291 -5.2700 5.7216 46 1 -2.1590 -7.9712 6.1896 47 1 2.0772 -2.4834 2.9282 48 1 0.6351 -3.0382 2.0339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992824731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:25 Heat of formation + Delta-G solvation = 41.338268 kcal Electronic energy + Delta-G solvation = -29277.245852 eV Core-core repulsion = 25368.022004 eV Total energy + Delta-G solvation = -3909.223848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.29178 -41.60804 -39.85124 -36.94456 -35.58032 -35.43470 -34.14697 -33.38654 -32.14279 -30.90095 -30.21298 -28.10659 -26.60381 -25.66551 -24.65552 -23.94575 -22.73302 -22.52018 -22.17068 -20.11758 -19.62162 -19.24297 -19.03849 -17.94275 -17.27872 -17.11546 -16.77594 -16.37933 -16.32791 -15.67890 -15.44842 -15.22475 -15.17616 -14.81956 -14.48810 -14.39204 -14.01287 -13.98118 -13.47629 -13.37279 -13.13510 -13.05270 -12.83652 -12.76295 -12.72609 -12.53146 -12.32244 -12.22824 -12.02187 -11.95831 -11.81008 -11.77728 -11.58508 -11.40708 -11.12238 -10.92103 -10.80960 -10.61911 -10.14916 -9.58216 -8.98914 -7.92951 -5.20613 0.55104 1.43572 1.44197 1.53412 1.53478 1.67976 1.83337 2.13456 2.54789 3.34609 3.41081 3.58202 3.61171 3.69811 3.82457 3.87714 4.00679 4.07632 4.22214 4.26416 4.29730 4.31507 4.38026 4.48336 4.48440 4.54236 4.61289 4.73722 4.82094 4.84925 4.93101 4.98247 5.03594 5.03851 5.10339 5.13844 5.21778 5.29977 5.33258 5.33935 5.42923 5.49632 5.57407 5.70235 5.71992 5.97455 6.28749 6.68401 7.22816 7.34488 7.43163 8.11453 8.32833 9.30619 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.002929 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.682886 B = 9557.158797 C =10849.500459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.301 1.301 7 C -0.226 4.226 8 H 0.075 0.925 9 N -0.736 5.736 10 C 0.187 3.813 11 H 0.040 0.960 12 C -0.114 4.114 13 C -0.106 4.106 14 C -0.106 4.106 15 C -0.082 4.082 16 H 0.118 0.882 17 C 0.099 3.901 18 N -0.616 5.616 19 C 0.514 3.486 20 O -0.595 6.595 21 C -0.115 4.115 22 C -0.027 4.027 23 C 0.010 3.990 24 C -0.050 4.050 25 N -0.301 5.301 26 N -0.109 5.109 27 N -0.375 5.375 28 H 0.461 0.539 29 C 0.142 3.858 30 C -0.092 4.092 31 H 0.045 0.955 32 H 0.247 0.753 33 H 0.369 0.631 34 H 0.052 0.948 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.214 0.786 47 H 0.026 0.974 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -19.614 10.418 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.229 1.229 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.376 5.376 10 C 0.079 3.921 11 H 0.058 0.942 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.143 4.143 15 C -0.101 4.101 16 H 0.136 0.864 17 C -0.023 4.023 18 N -0.349 5.349 19 C 0.305 3.695 20 O -0.476 6.476 21 C -0.155 4.155 22 C -0.067 4.067 23 C -0.125 4.125 24 C -0.208 4.208 25 N -0.167 5.167 26 N -0.089 5.089 27 N -0.098 5.098 28 H 0.310 0.690 29 C 0.019 3.981 30 C -0.114 4.114 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.200 0.800 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.064 0.936 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.144 0.856 43 H 0.135 0.865 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.230 0.770 47 H 0.044 0.956 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.752 -20.050 11.708 23.920 hybrid contribution -0.108 3.236 -0.844 3.346 sum 5.644 -16.815 10.864 20.800 Atomic orbital electron populations 1.69829 1.06609 1.25560 1.60026 1.25478 0.96178 1.00855 1.04424 0.85222 0.78521 0.80649 0.76338 1.18720 1.22263 1.22855 1.19567 0.91158 0.85140 1.39931 0.90681 1.42869 1.05195 1.01039 1.88469 1.19247 0.94538 0.85513 0.92842 0.94228 1.21367 0.98419 0.95883 0.99534 1.21382 1.01843 0.94297 0.96909 1.21543 0.98503 0.99590 0.94670 1.21904 1.01621 0.92640 0.93977 0.86371 1.22844 0.90542 0.92288 0.96607 1.48795 1.29385 1.24341 1.32363 1.21112 0.78952 0.88183 0.81248 1.90753 1.42804 1.40912 1.73163 1.21617 1.00903 0.96839 0.96149 1.19795 1.00068 0.93057 0.93810 1.22247 1.02235 0.99895 0.88089 1.23926 1.05205 0.91739 0.99926 1.75088 1.13722 1.26297 1.01588 1.78250 1.16180 0.92461 1.22012 1.45183 1.38300 1.14861 1.11448 0.69000 1.21316 0.99619 0.89261 0.87943 1.20971 0.98088 0.96788 0.95518 0.93671 0.94409 0.79955 0.92960 0.94297 0.90548 0.90597 0.88453 0.93562 0.86842 0.89975 0.85615 0.86500 0.89713 0.88291 0.76965 0.95603 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.96 46.83 29.55 68.60 2.03 48.86 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 7 C -0.23 -12.26 9.72 84.03 0.82 -11.44 16 8 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -36.03 3.40 -331.26 -1.13 -37.16 16 10 C 0.19 6.77 2.68 43.26 0.12 6.89 16 11 H 0.04 1.47 8.04 -2.39 -0.02 1.45 16 12 C -0.11 -3.47 5.38 30.04 0.16 -3.31 16 13 C -0.11 -2.12 5.94 30.46 0.18 -1.93 16 14 C -0.11 -1.79 4.98 30.50 0.15 -1.64 16 15 C -0.08 -1.54 3.38 -10.38 -0.04 -1.57 16 16 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 17 C 0.10 1.61 6.12 86.96 0.53 2.14 16 18 N -0.62 -16.70 3.30 -813.53 -2.69 -19.38 16 19 C 0.51 14.03 7.86 87.66 0.69 14.72 16 20 O -0.60 -23.27 16.33 -3.04 -0.05 -23.32 16 21 C -0.12 -1.59 4.64 29.85 0.14 -1.45 16 22 C -0.03 -0.39 5.07 29.85 0.15 -0.24 16 23 C 0.01 0.14 6.56 41.36 0.27 0.41 16 24 C -0.05 -0.80 11.99 83.73 1.00 0.20 16 25 N -0.30 -6.67 12.41 -58.26 -0.72 -7.39 16 26 N -0.11 -2.23 13.38 37.02 0.50 -1.74 16 27 N -0.37 -5.02 6.98 -47.79 -0.33 -5.35 16 28 H 0.46 2.99 8.96 -219.96 -1.97 1.02 16 29 C 0.14 5.35 5.93 86.20 0.51 5.86 16 30 C -0.09 -2.83 2.22 -12.39 -0.03 -2.86 16 31 H 0.04 1.46 8.02 -2.39 -0.02 1.44 16 32 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.37 20.23 7.36 -92.71 -0.68 19.55 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.04 1.33 7.98 -2.39 -0.02 1.31 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.96 7.96 -2.39 -0.02 0.94 16 40 H 0.11 1.04 6.99 -2.39 -0.02 1.02 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.13 1.14 7.83 -2.39 -0.02 1.12 16 43 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 46 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 47 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.04 2.02 6.69 -2.39 -0.02 2.01 16 Total: -1.00 -81.36 383.07 1.34 -80.01 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -1.67 Total: 24.17 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.13 Total: 1.77 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -4.09 Total: -131.49 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -81.36 1.34 -80.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992824731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.352 kcal (2) G-P(sol) polarization free energy of solvation -81.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds