Wall clock time and date at job start Tue Mar 31 2020 17:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00471 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00019 * 3 2 1 5 5 H 1.48507 * 109.46947 * 29.99898 * 3 2 1 6 6 H 1.48498 * 109.47305 * 149.99544 * 3 2 1 7 7 C 1.38814 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00289 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52625 * 325.08065 * 10 9 7 12 12 C 1.53046 * 109.49651 * 204.99988 * 10 9 7 13 13 C 1.53039 * 109.52798 * 178.67721 * 12 10 9 14 14 C 1.53195 * 109.31257 * 61.36716 * 13 12 10 15 15 N 1.46919 * 108.77845 * 305.36660 * 14 13 12 16 16 C 1.34771 * 120.63234 * 233.62780 * 15 14 13 17 17 O 1.21291 * 120.00118 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00281 * 0.02562 * 16 15 14 19 19 N 1.46493 * 109.47294 * 179.97438 * 18 16 15 20 20 N 1.29109 * 126.00954 * 269.69125 * 19 18 16 21 21 N 1.29017 * 110.26003 * 179.77019 * 20 19 18 22 22 C 1.32905 * 108.63446 * 0.41872 * 21 20 19 23 23 C 1.34395 * 126.00843 * 90.00350 * 19 18 16 24 24 C 1.50542 * 129.25414 * 0.21180 * 23 19 18 25 25 C 1.53439 * 108.32367 * 163.51421 * 24 23 19 26 26 C 1.53110 * 109.54884 * 49.71291 * 25 24 23 27 27 C 1.50601 * 129.16082 * 179.97438 * 22 21 20 28 28 C 1.46931 * 118.73612 * 53.60997 * 15 14 13 29 29 H 0.97000 * 119.99768 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99598 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46115 * 58.66174 * 12 10 9 32 32 H 1.09004 * 109.45806 * 298.69059 * 12 10 9 33 33 H 1.08997 * 109.50134 * 181.32407 * 13 12 10 34 34 H 1.09006 * 109.49908 * 301.38992 * 13 12 10 35 35 H 1.08997 * 109.58182 * 65.15696 * 14 13 12 36 36 H 1.09000 * 109.58502 * 185.57641 * 14 13 12 37 37 H 1.09000 * 109.47185 * 300.00337 * 18 16 15 38 38 H 1.08995 * 109.46812 * 59.99667 * 18 16 15 39 39 H 1.09005 * 109.68926 * 283.23312 * 24 23 19 40 40 H 1.09004 * 109.69185 * 43.81373 * 24 23 19 41 41 H 1.09001 * 109.46289 * 289.68616 * 25 24 23 42 42 H 1.09003 * 109.43772 * 169.72507 * 25 24 23 43 43 H 1.08997 * 109.45614 * 169.88965 * 26 25 24 44 44 H 1.08998 * 109.45662 * 49.94917 * 26 25 24 45 45 H 1.09000 * 109.69536 * 283.14484 * 27 22 21 46 46 H 1.09006 * 109.68949 * 43.68494 * 27 22 21 47 47 H 1.08998 * 109.58959 * 66.17523 * 28 15 14 48 48 H 1.09003 * 109.58181 * 186.46006 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9696 -3.5512 -0.5875 12 6 1.1809 -4.7529 -0.6092 13 6 1.9573 -6.0714 -0.6398 14 6 2.3174 -6.4806 0.7919 15 7 3.0362 -5.3719 1.4342 16 6 4.2393 -5.5738 2.0071 17 8 4.8225 -4.6503 2.5345 18 6 4.8600 -6.9469 1.9925 19 7 6.1566 -6.9040 2.6730 20 7 7.2976 -6.6658 2.1178 21 7 8.2387 -6.6971 2.9998 22 6 7.7023 -6.9753 4.1836 23 6 6.3682 -7.1114 3.9838 24 6 5.3766 -7.4356 5.0692 25 6 6.1473 -7.9757 6.2811 26 6 7.3042 -7.0300 6.6154 27 6 8.3764 -7.1224 5.5222 28 6 2.4187 -4.0386 1.4396 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 0.9022 -4.4720 -1.6248 32 1 0.2811 -4.8753 -0.0063 33 1 1.3409 -6.8462 -1.0955 34 1 2.8698 -5.9429 -1.2222 35 1 1.4066 -6.6976 1.3499 36 1 2.9543 -7.3650 0.7699 37 1 4.2026 -7.6483 2.5063 38 1 5.0017 -7.2705 0.9614 39 1 4.8330 -6.5339 5.3514 40 1 4.6761 -8.1911 4.7131 41 1 6.5423 -8.9647 6.0490 42 1 5.4757 -8.0445 7.1368 43 1 7.7382 -7.3123 7.5745 44 1 6.9320 -6.0072 6.6727 45 1 8.8751 -8.0900 5.5781 46 1 9.1070 -6.3244 5.6552 47 1 1.5161 -4.0564 2.0504 48 1 3.1217 -3.3121 1.8473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000219036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:46 Heat of formation + Delta-G solvation = 68.216982 kcal Electronic energy + Delta-G solvation = -29208.184646 eV Core-core repulsion = 25300.126347 eV Total energy + Delta-G solvation = -3908.058300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.49095 -40.18192 -37.61034 -37.26913 -34.95364 -34.59086 -32.49794 -31.35587 -30.85704 -30.28190 -29.21665 -27.91811 -25.18850 -24.36880 -24.06868 -22.86329 -22.04471 -21.94463 -20.32355 -19.81661 -19.12964 -17.86569 -17.25384 -17.16217 -16.26713 -15.72781 -15.55313 -15.07756 -14.77142 -14.37828 -14.26426 -14.20015 -14.13446 -13.95781 -13.83306 -13.50367 -13.45228 -13.15759 -12.69298 -12.55617 -12.40650 -12.30044 -11.65101 -11.49558 -11.44740 -11.29632 -11.26558 -11.16242 -10.90070 -10.77585 -10.70628 -10.58702 -10.48396 -10.26345 -9.92605 -9.82473 -9.63186 -9.16773 -8.89937 -8.55696 -7.07543 -5.84372 -3.14663 1.42571 2.04419 2.39291 2.50985 2.97244 3.42212 3.47898 3.50787 3.94364 4.09947 4.18189 4.38774 4.45796 4.51827 4.55167 4.62302 4.68119 4.72926 4.89705 5.07390 5.07545 5.17147 5.21816 5.29013 5.36222 5.38576 5.44887 5.49503 5.58434 5.66734 5.68161 5.76940 5.81753 5.87884 5.88796 5.98261 6.03371 6.07942 6.16470 6.21756 6.34299 6.39828 6.55080 6.71096 6.87413 7.33766 7.67104 8.01585 8.33635 8.47665 9.45859 9.98158 10.33326 11.37664 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002853 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.786503 B = 9811.471549 C =10799.454038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.103 3.897 15 N -0.599 5.599 16 C 0.497 3.503 17 O -0.519 6.519 18 C 0.095 3.905 19 N -0.267 5.267 20 N -0.084 5.084 21 N -0.261 5.261 22 C -0.023 4.023 23 C -0.008 4.008 24 C -0.048 4.048 25 C -0.112 4.112 26 C -0.122 4.122 27 C -0.031 4.031 28 C 0.093 3.907 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -23.690 9.688 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.020 4.020 15 N -0.333 5.333 16 C 0.280 3.720 17 O -0.394 6.394 18 C -0.031 4.031 19 N -0.058 5.058 20 N -0.061 5.061 21 N -0.125 5.125 22 C -0.162 4.162 23 C -0.141 4.141 24 C -0.087 4.087 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.070 4.070 28 C -0.031 4.031 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.596 -22.662 8.585 25.396 hybrid contribution -0.723 0.782 0.654 1.249 sum 6.873 -21.881 9.238 24.726 Atomic orbital electron populations 1.69657 1.05135 1.25877 1.57263 1.24747 0.95523 0.97802 1.02427 0.86192 0.78859 0.83590 0.77630 1.21567 1.21652 1.20558 1.19267 0.91112 0.83942 1.43333 0.91052 1.42367 1.05804 0.99543 1.88004 1.20486 0.95044 0.86577 0.92194 0.93042 1.21836 0.98668 0.93940 1.02062 1.21894 1.01227 0.98469 0.95392 1.21841 0.97176 0.88447 0.94551 1.48281 1.18071 1.11772 1.55192 1.20295 0.81949 0.89682 0.80025 1.90823 1.61002 1.43279 1.44302 1.21952 0.81087 0.98557 1.01469 1.46299 1.07888 1.45153 1.06465 1.78604 0.86411 1.19630 1.21491 1.74781 1.23047 1.16013 0.98707 1.21596 0.91030 1.07459 0.96141 1.21743 0.97819 1.08538 0.86040 1.20224 0.95095 1.01888 0.91486 1.21565 0.97437 0.99361 0.96679 1.21649 0.95620 1.00603 0.98091 1.19925 0.97182 1.02957 0.86926 1.22918 0.97777 0.80912 1.01505 0.93395 0.78011 0.91178 0.91902 0.90658 0.91364 0.90679 0.90621 0.85320 0.84711 0.89430 0.90353 0.91225 0.90490 0.90593 0.91189 0.90149 0.89833 0.91690 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.80 9.93 -15.06 -0.15 -6.95 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.36 5.12 -53.31 -0.27 -17.63 16 10 C 0.17 3.18 2.92 -67.81 -0.20 2.98 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.81 5.35 -26.69 -0.14 -1.95 16 13 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 14 C 0.10 0.90 6.34 -3.71 -0.02 0.88 16 15 N -0.60 -8.03 2.97 -172.77 -0.51 -8.54 16 16 C 0.50 7.19 7.77 -10.99 -0.09 7.10 16 17 O -0.52 -10.35 15.84 5.55 0.09 -10.27 16 18 C 0.10 0.95 5.07 -5.20 -0.03 0.92 16 19 N -0.27 -3.61 2.82 -58.44 -0.16 -3.77 16 20 N -0.08 -1.39 13.19 60.35 0.80 -0.60 16 21 N -0.26 -4.32 12.40 33.16 0.41 -3.91 16 22 C -0.02 -0.30 7.11 -83.12 -0.59 -0.89 16 23 C -0.01 -0.10 6.76 -82.49 -0.56 -0.65 16 24 C -0.05 -0.39 5.97 -27.73 -0.17 -0.56 16 25 C -0.11 -0.70 5.90 -26.45 -0.16 -0.86 16 26 C -0.12 -0.87 5.89 -26.47 -0.16 -1.02 16 27 C -0.03 -0.28 6.30 -27.72 -0.17 -0.46 16 28 C 0.09 1.65 6.02 -3.71 -0.02 1.63 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.39 9.79 7.80 -40.82 -0.32 9.47 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.40 5.93 -51.93 -0.31 0.09 16 37 H 0.13 0.73 7.51 -51.93 -0.39 0.34 16 38 H 0.14 1.05 7.69 -51.93 -0.40 0.65 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 41 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.09 1.97 7.00 -51.93 -0.36 1.61 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -36.74 383.03 -8.54 -45.28 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.65 Total: 4.62 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.71 Total: -1.65 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.98 Total: -61.43 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.74 -8.54 -45.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.494 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds