Wall clock time and date at job start Tue Mar 31 2020 17:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00471 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00019 * 3 2 1 5 5 H 1.48507 * 109.46947 * 29.99898 * 3 2 1 6 6 H 1.48498 * 109.47305 * 149.99544 * 3 2 1 7 7 C 1.38814 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00289 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52625 * 325.08065 * 10 9 7 12 12 C 1.53046 * 109.49651 * 204.99988 * 10 9 7 13 13 C 1.53039 * 109.52798 * 178.67721 * 12 10 9 14 14 C 1.53195 * 109.31257 * 61.36716 * 13 12 10 15 15 N 1.46919 * 108.77845 * 305.36660 * 14 13 12 16 16 C 1.34771 * 120.63234 * 233.62780 * 15 14 13 17 17 O 1.21291 * 120.00118 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00281 * 0.02562 * 16 15 14 19 19 N 1.46493 * 109.47294 * 179.97438 * 18 16 15 20 20 N 1.29109 * 126.00954 * 269.69125 * 19 18 16 21 21 N 1.29017 * 110.26003 * 179.77019 * 20 19 18 22 22 C 1.32905 * 108.63446 * 0.41872 * 21 20 19 23 23 C 1.34395 * 126.00843 * 90.00350 * 19 18 16 24 24 C 1.50542 * 129.25414 * 0.21180 * 23 19 18 25 25 C 1.53439 * 108.32367 * 163.51421 * 24 23 19 26 26 C 1.53110 * 109.54884 * 49.71291 * 25 24 23 27 27 C 1.50601 * 129.16082 * 179.97438 * 22 21 20 28 28 C 1.46931 * 118.73612 * 53.60997 * 15 14 13 29 29 H 0.97000 * 119.99768 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99598 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46115 * 58.66174 * 12 10 9 32 32 H 1.09004 * 109.45806 * 298.69059 * 12 10 9 33 33 H 1.08997 * 109.50134 * 181.32407 * 13 12 10 34 34 H 1.09006 * 109.49908 * 301.38992 * 13 12 10 35 35 H 1.08997 * 109.58182 * 65.15696 * 14 13 12 36 36 H 1.09000 * 109.58502 * 185.57641 * 14 13 12 37 37 H 1.09000 * 109.47185 * 300.00337 * 18 16 15 38 38 H 1.08995 * 109.46812 * 59.99667 * 18 16 15 39 39 H 1.09005 * 109.68926 * 283.23312 * 24 23 19 40 40 H 1.09004 * 109.69185 * 43.81373 * 24 23 19 41 41 H 1.09001 * 109.46289 * 289.68616 * 25 24 23 42 42 H 1.09003 * 109.43772 * 169.72507 * 25 24 23 43 43 H 1.08997 * 109.45614 * 169.88965 * 26 25 24 44 44 H 1.08998 * 109.45662 * 49.94917 * 26 25 24 45 45 H 1.09000 * 109.69536 * 283.14484 * 27 22 21 46 46 H 1.09006 * 109.68949 * 43.68494 * 27 22 21 47 47 H 1.08998 * 109.58959 * 66.17523 * 28 15 14 48 48 H 1.09003 * 109.58181 * 186.46006 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9696 -3.5512 -0.5875 12 6 1.1809 -4.7529 -0.6092 13 6 1.9573 -6.0714 -0.6398 14 6 2.3174 -6.4806 0.7919 15 7 3.0362 -5.3719 1.4342 16 6 4.2393 -5.5738 2.0071 17 8 4.8225 -4.6503 2.5345 18 6 4.8600 -6.9469 1.9925 19 7 6.1566 -6.9040 2.6730 20 7 7.2976 -6.6658 2.1178 21 7 8.2387 -6.6971 2.9998 22 6 7.7023 -6.9753 4.1836 23 6 6.3682 -7.1114 3.9838 24 6 5.3766 -7.4356 5.0692 25 6 6.1473 -7.9757 6.2811 26 6 7.3042 -7.0300 6.6154 27 6 8.3764 -7.1224 5.5222 28 6 2.4187 -4.0386 1.4396 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 0.9022 -4.4720 -1.6248 32 1 0.2811 -4.8753 -0.0063 33 1 1.3409 -6.8462 -1.0955 34 1 2.8698 -5.9429 -1.2222 35 1 1.4066 -6.6976 1.3499 36 1 2.9543 -7.3650 0.7699 37 1 4.2026 -7.6483 2.5063 38 1 5.0017 -7.2705 0.9614 39 1 4.8330 -6.5339 5.3514 40 1 4.6761 -8.1911 4.7131 41 1 6.5423 -8.9647 6.0490 42 1 5.4757 -8.0445 7.1368 43 1 7.7382 -7.3123 7.5745 44 1 6.9320 -6.0072 6.6727 45 1 8.8751 -8.0900 5.5781 46 1 9.1070 -6.3244 5.6552 47 1 1.5161 -4.0564 2.0504 48 1 3.1217 -3.3121 1.8473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000219036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:46 Heat of formation + Delta-G solvation = 41.576766 kcal Electronic energy + Delta-G solvation = -29209.339853 eV Core-core repulsion = 25300.126347 eV Total energy + Delta-G solvation = -3909.213506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.46325 -41.34473 -38.87678 -37.95467 -36.32865 -35.88633 -34.03340 -32.79104 -31.65872 -31.12471 -30.51556 -29.19468 -26.33222 -25.92843 -25.10075 -23.63273 -23.32712 -22.99830 -21.59376 -20.55965 -20.24847 -19.19379 -18.85653 -18.22777 -17.32334 -16.88912 -16.68505 -16.42547 -15.93855 -15.60617 -15.47960 -15.32158 -14.92988 -14.87817 -14.82010 -14.72410 -14.54119 -14.12669 -14.03418 -13.72201 -13.46665 -13.14897 -13.06171 -12.94867 -12.57473 -12.54999 -12.27646 -12.25278 -12.08021 -11.96782 -11.92538 -11.82531 -11.74201 -11.46056 -11.37782 -11.34324 -11.15827 -10.76624 -9.86872 -9.83539 -9.07481 -8.04589 -5.33373 0.43609 1.19442 1.30753 1.40077 1.40684 1.49528 1.49754 1.91390 2.48200 3.15479 3.18917 3.28725 3.49093 3.70124 3.71407 3.83061 3.89763 3.96172 4.01019 4.03912 4.09240 4.17283 4.28773 4.35628 4.42930 4.55526 4.57361 4.59067 4.60094 4.71887 4.83319 4.86146 4.90519 4.99524 5.01184 5.08106 5.14844 5.19324 5.21707 5.32564 5.34774 5.39355 5.42984 5.45156 5.49690 5.58030 6.18912 6.26065 6.91391 7.25800 7.44017 7.98002 8.23035 9.17808 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002853 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.786503 B = 9811.471549 C =10799.454038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.064 4.064 3 Si 0.964 3.036 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.247 4.247 8 H 0.060 0.940 9 N -0.729 5.729 10 C 0.166 3.834 11 H 0.025 0.975 12 C -0.119 4.119 13 C -0.124 4.124 14 C 0.095 3.905 15 N -0.593 5.593 16 C 0.492 3.508 17 O -0.587 6.587 18 C 0.097 3.903 19 N -0.269 5.269 20 N -0.129 5.129 21 N -0.301 5.301 22 C -0.043 4.043 23 C -0.004 4.004 24 C -0.049 4.049 25 C -0.108 4.108 26 C -0.120 4.120 27 C -0.032 4.032 28 C 0.109 3.891 29 H 0.254 0.746 30 H 0.379 0.621 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.051 0.949 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 -27.637 10.635 30.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.257 4.257 3 Si 0.793 3.207 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.078 0.922 9 N -0.369 5.369 10 C 0.056 3.944 11 H 0.043 0.957 12 C -0.157 4.157 13 C -0.163 4.163 14 C -0.025 4.025 15 N -0.326 5.326 16 C 0.279 3.721 17 O -0.467 6.467 18 C -0.027 4.027 19 N -0.060 5.060 20 N -0.106 5.106 21 N -0.165 5.165 22 C -0.183 4.183 23 C -0.138 4.138 24 C -0.088 4.088 25 C -0.146 4.146 26 C -0.157 4.157 27 C -0.071 4.071 28 C -0.016 4.016 29 H 0.063 0.937 30 H 0.212 0.788 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.203 0.797 38 H 0.182 0.818 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.069 0.931 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.612 -26.684 9.491 29.083 hybrid contribution -0.402 1.969 0.371 2.043 sum 6.210 -24.715 9.861 27.324 Atomic orbital electron populations 1.69768 1.06144 1.26254 1.58854 1.25426 0.96385 1.00610 1.03253 0.85288 0.77551 0.80166 0.77659 1.20956 1.21368 1.20723 1.19450 0.90817 0.85670 1.41986 0.92239 1.42487 1.05560 1.00551 1.88279 1.20676 0.94611 0.86263 0.92847 0.95653 1.21758 0.98596 0.94512 1.00880 1.21908 1.00962 0.96724 0.96684 1.22337 0.98905 0.87964 0.93323 1.48265 1.18096 1.11127 1.55081 1.21112 0.81442 0.90945 0.78584 1.90804 1.62715 1.45912 1.47255 1.22348 0.80276 0.96023 1.04014 1.46578 1.08071 1.44223 1.07153 1.78492 0.87683 1.21963 1.22474 1.74699 1.24272 1.17280 1.00221 1.22358 0.92219 1.07148 0.96596 1.22487 0.98384 1.06632 0.86332 1.20482 0.94902 1.02484 0.90924 1.21607 0.97146 0.99259 0.96583 1.21672 0.95604 1.00075 0.98391 1.20113 0.97723 1.03551 0.85761 1.22239 0.96653 0.82828 0.99915 0.93684 0.78830 0.92320 0.90980 0.86530 0.91989 0.88169 0.85573 0.79673 0.81845 0.90493 0.86867 0.89984 0.88084 0.88027 0.93056 0.88378 0.90735 0.91464 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.49 13.06 21.65 0.28 -58.21 16 2 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.96 47.99 29.55 68.60 2.03 50.02 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.25 -14.27 9.93 84.03 0.83 -13.43 16 8 H 0.06 3.50 7.83 -2.91 -0.02 3.47 16 9 N -0.73 -36.65 5.12 -322.58 -1.65 -38.30 16 10 C 0.17 6.43 2.92 45.07 0.13 6.56 16 11 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 12 C -0.12 -3.23 5.35 30.62 0.16 -3.06 16 13 C -0.12 -1.99 6.08 30.67 0.19 -1.80 16 14 C 0.10 1.19 6.34 86.36 0.55 1.74 16 15 N -0.59 -14.85 2.97 -818.91 -2.43 -17.29 16 16 C 0.49 13.71 7.77 87.66 0.68 14.39 16 17 O -0.59 -24.39 15.84 -3.06 -0.05 -24.44 16 18 C 0.10 1.60 5.07 85.63 0.43 2.04 16 19 N -0.27 -6.90 2.82 -338.80 -0.95 -7.86 16 20 N -0.13 -4.36 13.19 37.02 0.49 -3.87 16 21 N -0.30 -10.30 12.40 -48.99 -0.61 -10.91 16 22 C -0.04 -1.13 7.11 41.75 0.30 -0.84 16 23 C 0.00 -0.09 6.76 41.50 0.28 0.19 16 24 C -0.05 -0.65 5.97 29.95 0.18 -0.47 16 25 C -0.11 -0.96 5.90 30.78 0.18 -0.78 16 26 C -0.12 -1.47 5.89 30.76 0.18 -1.29 16 27 C -0.03 -0.58 6.30 29.95 0.19 -0.39 16 28 C 0.11 3.98 6.02 86.36 0.52 4.50 16 29 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.38 19.84 7.80 -92.71 -0.72 19.12 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.13 0.41 5.93 -2.39 -0.01 0.40 16 37 H 0.19 0.90 7.51 -2.39 -0.02 0.88 16 38 H 0.16 1.79 7.69 -2.39 -0.02 1.77 16 39 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.11 0.71 7.87 -2.39 -0.02 0.69 16 41 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 45 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.04 1.90 7.00 -2.39 -0.02 1.88 16 Total: -1.00 -90.09 383.03 2.62 -87.47 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.25 Total: 19.29 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.27 Total: 4.10 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -4.88 Total: -136.44 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -90.09 2.62 -87.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.047 kcal (2) G-P(sol) polarization free energy of solvation -90.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds