Wall clock time and date at job start Tue Mar 31 2020 17:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99451 * 2 1 4 4 H 1.48500 * 109.46906 * 270.00241 * 3 2 1 5 5 H 1.48493 * 109.47414 * 30.00208 * 3 2 1 6 6 H 1.48502 * 109.46827 * 150.00517 * 3 2 1 7 7 C 1.38809 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99599 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99508 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.49553 * 34.93492 * 10 9 7 12 12 C 1.53041 * 109.49273 * 155.00058 * 10 9 7 13 13 C 1.53042 * 109.53615 * 181.31419 * 12 10 9 14 14 C 1.53192 * 109.31299 * 298.63837 * 13 12 10 15 15 N 1.46924 * 108.77584 * 54.63183 * 14 13 12 16 16 C 1.34782 * 120.62847 * 126.37172 * 15 14 13 17 17 O 1.21280 * 120.00058 * 179.97438 * 16 15 14 18 18 C 1.50702 * 120.00033 * 0.02562 * 16 15 14 19 19 N 1.46496 * 109.47132 * 180.02562 * 18 16 15 20 20 N 1.29106 * 126.01009 * 90.02256 * 19 18 16 21 21 N 1.29021 * 110.25897 * 179.97438 * 20 19 18 22 22 C 1.32908 * 108.63610 * 359.97197 * 21 20 19 23 23 C 1.34340 * 125.98751 * 269.97750 * 19 18 16 24 24 C 1.50538 * 129.30027 * 0.27510 * 23 19 18 25 25 C 1.53432 * 108.35750 * 163.42372 * 24 23 19 26 26 C 1.53103 * 109.55597 * 49.70503 * 25 24 23 27 27 C 1.50599 * 129.16219 * 180.10240 * 22 21 20 28 28 C 1.46918 * 118.73809 * 306.64222 * 15 14 13 29 29 H 0.96995 * 120.00619 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00142 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46287 * 61.29488 * 12 10 9 32 32 H 1.09001 * 109.44904 * 301.32393 * 12 10 9 33 33 H 1.08994 * 109.49774 * 178.67906 * 13 12 10 34 34 H 1.09005 * 109.52048 * 58.60217 * 13 12 10 35 35 H 1.09000 * 109.58173 * 294.84379 * 14 13 12 36 36 H 1.08999 * 109.58417 * 174.42027 * 14 13 12 37 37 H 1.09002 * 109.47414 * 59.99783 * 18 16 15 38 38 H 1.09000 * 109.46676 * 300.00051 * 18 16 15 39 39 H 1.09002 * 109.69497 * 43.69341 * 24 23 19 40 40 H 1.08996 * 109.68990 * 283.14972 * 24 23 19 41 41 H 1.09010 * 109.45442 * 169.73245 * 25 24 23 42 42 H 1.09004 * 109.45664 * 289.67842 * 25 24 23 43 43 H 1.09006 * 109.45408 * 49.97967 * 26 25 24 44 44 H 1.09004 * 109.45243 * 169.90935 * 26 25 24 45 45 H 1.08997 * 109.69164 * 43.76396 * 27 22 21 46 46 H 1.09001 * 109.72347 * 283.20853 * 27 22 21 47 47 H 1.09004 * 109.58371 * 173.14660 * 28 15 14 48 48 H 1.08996 * 109.58997 * 293.56833 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4974 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9701 -3.5507 0.5860 12 6 1.1819 -4.7531 0.6082 13 6 1.9582 -6.0717 0.6375 14 6 2.3171 -6.4803 -0.7946 15 7 3.0356 -5.3712 -1.4368 16 6 4.2383 -5.5730 -2.0107 17 8 4.8211 -4.6493 -2.5381 18 6 4.8582 -6.9465 -1.9982 19 7 6.1545 -6.9034 -2.6794 20 7 7.2953 -6.6614 -2.1255 21 7 8.2368 -6.6991 -3.0069 22 6 7.6997 -6.9772 -4.1904 23 6 6.3647 -7.1096 -3.9901 24 6 5.3717 -7.4227 -5.0774 25 6 6.0393 -7.1562 -6.4329 26 6 7.4039 -7.8490 -6.4771 27 6 8.3740 -7.1318 -5.5281 28 6 2.4208 -4.0368 -1.4361 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3880 0.0002 31 1 0.2814 -4.8751 0.0062 32 1 0.9042 -4.4725 1.6242 33 1 1.3419 -6.8466 1.0934 34 1 2.8712 -5.9440 1.2191 35 1 1.4058 -6.6968 -1.3520 36 1 2.9539 -7.3647 -0.7735 37 1 4.2002 -7.6469 -2.5126 38 1 5.0004 -7.2715 -0.9676 39 1 4.4944 -6.7850 -4.9683 40 1 5.0751 -8.4695 -5.0135 41 1 5.4080 -7.5462 -7.2314 42 1 6.1725 -6.0827 -6.5672 43 1 7.2934 -8.8886 -6.1684 44 1 7.7970 -7.8122 -7.4931 45 1 9.2814 -7.7250 -5.4156 46 1 8.6247 -6.1498 -5.9294 47 1 3.1261 -3.3094 -1.8383 48 1 1.5182 -4.0500 -2.0470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000219040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:50 Heat of formation + Delta-G solvation = 68.321921 kcal Electronic energy + Delta-G solvation = -29216.061787 eV Core-core repulsion = 25308.008038 eV Total energy + Delta-G solvation = -3908.053749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49252 -40.19017 -37.62123 -37.26676 -34.95218 -34.59554 -32.49898 -31.36555 -30.85516 -30.27859 -29.21750 -27.92287 -25.19444 -24.37070 -24.06865 -22.86085 -22.04529 -21.94457 -20.34557 -19.82653 -19.10508 -17.85182 -17.25931 -17.16354 -16.24168 -15.79947 -15.50721 -15.10112 -14.76805 -14.39103 -14.28361 -14.19034 -14.12428 -13.99286 -13.72262 -13.51217 -13.44470 -13.18431 -12.70391 -12.56498 -12.41751 -12.31807 -11.65202 -11.49186 -11.43458 -11.30842 -11.25514 -11.16537 -10.90313 -10.77502 -10.70539 -10.57766 -10.48700 -10.26471 -9.92461 -9.82679 -9.63195 -9.16792 -8.89973 -8.55953 -7.07772 -5.84392 -3.14772 1.41918 2.04856 2.38939 2.50943 2.96762 3.42459 3.48041 3.50068 3.94204 4.09592 4.18854 4.39743 4.48835 4.52084 4.53421 4.63521 4.67897 4.73690 4.89586 5.06518 5.07475 5.11927 5.23325 5.30053 5.36184 5.38422 5.45031 5.53696 5.57701 5.67235 5.68065 5.77382 5.81618 5.87739 5.88558 5.97227 6.03228 6.07977 6.16595 6.21729 6.34016 6.39748 6.54997 6.71555 6.87429 7.33457 7.66983 8.01232 8.33543 8.47608 9.45795 9.98029 10.33243 11.37622 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.002846 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.210480 B = 9837.703169 C =10795.612151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.103 3.897 15 N -0.599 5.599 16 C 0.496 3.504 17 O -0.519 6.519 18 C 0.095 3.905 19 N -0.267 5.267 20 N -0.084 5.084 21 N -0.261 5.261 22 C -0.022 4.022 23 C -0.008 4.008 24 C -0.047 4.047 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.032 4.032 28 C 0.093 3.907 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -23.695 -9.658 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.020 4.020 15 N -0.333 5.333 16 C 0.280 3.720 17 O -0.394 6.394 18 C -0.031 4.031 19 N -0.058 5.058 20 N -0.061 5.061 21 N -0.126 5.126 22 C -0.162 4.162 23 C -0.142 4.142 24 C -0.086 4.086 25 C -0.153 4.153 26 C -0.156 4.156 27 C -0.071 4.071 28 C -0.031 4.031 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.597 -22.668 -8.538 25.386 hybrid contribution -0.719 0.788 -0.674 1.262 sum 6.878 -21.880 -9.212 24.717 Atomic orbital electron populations 1.69653 1.05131 1.25885 1.57266 1.24746 0.95521 0.97799 1.02427 0.86190 0.78770 0.83589 0.77691 1.21540 1.21672 1.20602 1.19264 0.91110 0.83939 1.43335 0.91054 1.42369 1.05799 0.99524 1.88029 1.20405 0.95063 0.86615 0.92264 0.93082 1.21833 0.98667 0.93928 1.02073 1.21894 1.01232 0.98474 0.95391 1.21844 0.97191 0.88442 0.94549 1.48280 1.18161 1.11680 1.55188 1.20302 0.81923 0.89704 0.80057 1.90822 1.60968 1.43282 1.44298 1.21962 0.81092 0.98536 1.01483 1.46287 1.07927 1.45060 1.06492 1.78605 0.86426 1.19553 1.21545 1.74783 1.23029 1.16035 0.98721 1.21613 0.90979 1.07471 0.96126 1.21748 0.97791 1.08657 0.86001 1.20195 0.95600 1.01959 0.90827 1.21577 0.96455 1.01992 0.95297 1.21645 0.94824 0.99614 0.99533 1.19955 0.97703 1.01754 0.87715 1.22821 0.97849 0.80908 1.01523 0.93389 0.78005 0.91900 0.91175 0.90652 0.91366 0.90669 0.90613 0.85284 0.84696 0.90111 0.89810 0.90491 0.90956 0.91446 0.90615 0.89938 0.89959 0.89061 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.80 9.93 -15.06 -0.15 -6.95 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.36 5.12 -53.53 -0.27 -17.63 16 10 C 0.17 3.17 2.91 -68.03 -0.20 2.97 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.81 5.36 -26.69 -0.14 -1.95 16 13 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 14 C 0.10 0.90 6.34 -3.71 -0.02 0.88 16 15 N -0.60 -8.02 2.98 -173.04 -0.52 -8.53 16 16 C 0.50 7.17 7.77 -10.98 -0.09 7.08 16 17 O -0.52 -10.33 15.84 5.56 0.09 -10.24 16 18 C 0.09 0.95 5.07 -5.20 -0.03 0.92 16 19 N -0.27 -3.60 2.81 -58.43 -0.16 -3.76 16 20 N -0.08 -1.39 13.19 60.35 0.80 -0.59 16 21 N -0.26 -4.32 12.40 33.17 0.41 -3.91 16 22 C -0.02 -0.30 7.11 -83.10 -0.59 -0.89 16 23 C -0.01 -0.10 6.77 -82.50 -0.56 -0.66 16 24 C -0.05 -0.38 5.95 -27.74 -0.16 -0.55 16 25 C -0.12 -0.81 5.90 -26.45 -0.16 -0.97 16 26 C -0.12 -0.77 5.90 -26.42 -0.16 -0.92 16 27 C -0.03 -0.30 6.30 -27.68 -0.17 -0.47 16 28 C 0.09 1.65 5.99 -3.94 -0.02 1.63 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.39 9.79 7.80 -40.82 -0.32 9.47 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.40 5.93 -51.93 -0.31 0.09 16 37 H 0.13 0.73 7.77 -51.93 -0.40 0.33 16 38 H 0.14 1.04 7.69 -51.93 -0.40 0.64 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 42 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 43 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 1.97 7.01 -51.93 -0.36 1.61 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -36.72 383.50 -8.56 -45.28 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.67 Total: 4.60 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.71 Total: -1.69 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.98 Total: -61.42 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.72 -8.56 -45.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.603 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds