Wall clock time and date at job start Tue Mar 31 2020 17:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99451 * 2 1 4 4 H 1.48500 * 109.46906 * 270.00241 * 3 2 1 5 5 H 1.48493 * 109.47414 * 30.00208 * 3 2 1 6 6 H 1.48502 * 109.46827 * 150.00517 * 3 2 1 7 7 C 1.38809 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99599 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99508 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.49553 * 34.93492 * 10 9 7 12 12 C 1.53041 * 109.49273 * 155.00058 * 10 9 7 13 13 C 1.53042 * 109.53615 * 181.31419 * 12 10 9 14 14 C 1.53192 * 109.31299 * 298.63837 * 13 12 10 15 15 N 1.46924 * 108.77584 * 54.63183 * 14 13 12 16 16 C 1.34782 * 120.62847 * 126.37172 * 15 14 13 17 17 O 1.21280 * 120.00058 * 179.97438 * 16 15 14 18 18 C 1.50702 * 120.00033 * 0.02562 * 16 15 14 19 19 N 1.46496 * 109.47132 * 180.02562 * 18 16 15 20 20 N 1.29106 * 126.01009 * 90.02256 * 19 18 16 21 21 N 1.29021 * 110.25897 * 179.97438 * 20 19 18 22 22 C 1.32908 * 108.63610 * 359.97197 * 21 20 19 23 23 C 1.34340 * 125.98751 * 269.97750 * 19 18 16 24 24 C 1.50538 * 129.30027 * 0.27510 * 23 19 18 25 25 C 1.53432 * 108.35750 * 163.42372 * 24 23 19 26 26 C 1.53103 * 109.55597 * 49.70503 * 25 24 23 27 27 C 1.50599 * 129.16219 * 180.10240 * 22 21 20 28 28 C 1.46918 * 118.73809 * 306.64222 * 15 14 13 29 29 H 0.96995 * 120.00619 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00142 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46287 * 61.29488 * 12 10 9 32 32 H 1.09001 * 109.44904 * 301.32393 * 12 10 9 33 33 H 1.08994 * 109.49774 * 178.67906 * 13 12 10 34 34 H 1.09005 * 109.52048 * 58.60217 * 13 12 10 35 35 H 1.09000 * 109.58173 * 294.84379 * 14 13 12 36 36 H 1.08999 * 109.58417 * 174.42027 * 14 13 12 37 37 H 1.09002 * 109.47414 * 59.99783 * 18 16 15 38 38 H 1.09000 * 109.46676 * 300.00051 * 18 16 15 39 39 H 1.09002 * 109.69497 * 43.69341 * 24 23 19 40 40 H 1.08996 * 109.68990 * 283.14972 * 24 23 19 41 41 H 1.09010 * 109.45442 * 169.73245 * 25 24 23 42 42 H 1.09004 * 109.45664 * 289.67842 * 25 24 23 43 43 H 1.09006 * 109.45408 * 49.97967 * 26 25 24 44 44 H 1.09004 * 109.45243 * 169.90935 * 26 25 24 45 45 H 1.08997 * 109.69164 * 43.76396 * 27 22 21 46 46 H 1.09001 * 109.72347 * 283.20853 * 27 22 21 47 47 H 1.09004 * 109.58371 * 173.14660 * 28 15 14 48 48 H 1.08996 * 109.58997 * 293.56833 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4974 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9701 -3.5507 0.5860 12 6 1.1819 -4.7531 0.6082 13 6 1.9582 -6.0717 0.6375 14 6 2.3171 -6.4803 -0.7946 15 7 3.0356 -5.3712 -1.4368 16 6 4.2383 -5.5730 -2.0107 17 8 4.8211 -4.6493 -2.5381 18 6 4.8582 -6.9465 -1.9982 19 7 6.1545 -6.9034 -2.6794 20 7 7.2953 -6.6614 -2.1255 21 7 8.2368 -6.6991 -3.0069 22 6 7.6997 -6.9772 -4.1904 23 6 6.3647 -7.1096 -3.9901 24 6 5.3717 -7.4227 -5.0774 25 6 6.0393 -7.1562 -6.4329 26 6 7.4039 -7.8490 -6.4771 27 6 8.3740 -7.1318 -5.5281 28 6 2.4208 -4.0368 -1.4361 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3880 0.0002 31 1 0.2814 -4.8751 0.0062 32 1 0.9042 -4.4725 1.6242 33 1 1.3419 -6.8466 1.0934 34 1 2.8712 -5.9440 1.2191 35 1 1.4058 -6.6968 -1.3520 36 1 2.9539 -7.3647 -0.7735 37 1 4.2002 -7.6469 -2.5126 38 1 5.0004 -7.2715 -0.9676 39 1 4.4944 -6.7850 -4.9683 40 1 5.0751 -8.4695 -5.0135 41 1 5.4080 -7.5462 -7.2314 42 1 6.1725 -6.0827 -6.5672 43 1 7.2934 -8.8886 -6.1684 44 1 7.7970 -7.8122 -7.4931 45 1 9.2814 -7.7250 -5.4156 46 1 8.6247 -6.1498 -5.9294 47 1 3.1261 -3.3094 -1.8383 48 1 1.5182 -4.0500 -2.0470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000219040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:49 Heat of formation + Delta-G solvation = 41.720303 kcal Electronic energy + Delta-G solvation = -29217.215320 eV Core-core repulsion = 25308.008038 eV Total energy + Delta-G solvation = -3909.207282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.46413 -41.35328 -38.89134 -37.95271 -36.33216 -35.88411 -34.03668 -32.79815 -31.65085 -31.12733 -30.52216 -29.19806 -26.33757 -25.93000 -25.10360 -23.63207 -23.32819 -22.99754 -21.60191 -20.60957 -20.19929 -19.19348 -18.84659 -18.23293 -17.28570 -16.95638 -16.62009 -16.48236 -15.91072 -15.65481 -15.47976 -15.32299 -14.93770 -14.92855 -14.80263 -14.66041 -14.48548 -14.14403 -14.04117 -13.72570 -13.50191 -13.14469 -13.06888 -12.95875 -12.57036 -12.55323 -12.26780 -12.26036 -12.07485 -11.97202 -11.92876 -11.82361 -11.74250 -11.46069 -11.37721 -11.34325 -11.16071 -10.76394 -9.86988 -9.83206 -9.07916 -8.04613 -5.33516 0.43391 1.19729 1.30521 1.39719 1.41065 1.49245 1.49632 1.90942 2.48068 3.15493 3.18267 3.28691 3.49468 3.70852 3.71220 3.84719 3.87853 3.95819 4.00176 4.03678 4.10859 4.17597 4.29197 4.35505 4.42332 4.55161 4.58359 4.58736 4.60086 4.71655 4.83283 4.85987 4.90431 4.99392 5.00726 5.08242 5.14683 5.19357 5.21180 5.32508 5.34622 5.39600 5.42817 5.45794 5.49536 5.57911 6.18795 6.25766 6.91057 7.25705 7.44139 7.97797 8.22890 9.17754 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.002846 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.210480 B = 9837.703169 C =10795.612151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.064 4.064 3 Si 0.964 3.036 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.060 0.940 9 N -0.729 5.729 10 C 0.165 3.835 11 H 0.025 0.975 12 C -0.119 4.119 13 C -0.124 4.124 14 C 0.095 3.905 15 N -0.593 5.593 16 C 0.492 3.508 17 O -0.586 6.586 18 C 0.097 3.903 19 N -0.268 5.268 20 N -0.130 5.130 21 N -0.301 5.301 22 C -0.042 4.042 23 C -0.004 4.004 24 C -0.046 4.046 25 C -0.116 4.116 26 C -0.110 4.110 27 C -0.036 4.036 28 C 0.110 3.890 29 H 0.254 0.746 30 H 0.379 0.621 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.041 0.959 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 -27.646 -10.653 30.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.257 4.257 3 Si 0.793 3.207 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.078 0.922 9 N -0.369 5.369 10 C 0.056 3.944 11 H 0.043 0.957 12 C -0.157 4.157 13 C -0.163 4.163 14 C -0.025 4.025 15 N -0.326 5.326 16 C 0.279 3.721 17 O -0.466 6.466 18 C -0.027 4.027 19 N -0.060 5.060 20 N -0.107 5.107 21 N -0.165 5.165 22 C -0.183 4.183 23 C -0.138 4.138 24 C -0.085 4.085 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.075 4.075 28 C -0.016 4.016 29 H 0.063 0.937 30 H 0.212 0.788 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.203 0.797 38 H 0.182 0.818 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.124 0.876 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.637 -26.693 -9.493 29.098 hybrid contribution -0.410 1.977 -0.379 2.054 sum 6.227 -24.716 -9.872 27.334 Atomic orbital electron populations 1.69764 1.06146 1.26264 1.58860 1.25426 0.96384 1.00609 1.03257 0.85294 0.77756 0.80194 0.77464 1.21570 1.21200 1.20251 1.19448 0.90821 0.85659 1.41970 0.92223 1.42490 1.05558 1.00538 1.88298 1.20592 0.94620 0.86299 0.92912 0.95706 1.21756 0.98599 0.94501 1.00892 1.21908 1.00966 0.96729 0.96681 1.22339 0.98917 0.87961 0.93321 1.48264 1.18190 1.11025 1.55085 1.21118 0.81411 0.90964 0.78615 1.90802 1.62675 1.45906 1.47241 1.22358 0.80286 0.95995 1.04017 1.46562 1.08104 1.44158 1.07171 1.78494 0.87695 1.21928 1.22534 1.74699 1.24259 1.17256 1.00251 1.22365 0.92138 1.07226 0.96574 1.22500 0.98377 1.06667 0.86294 1.20457 0.94332 1.04023 0.89694 1.21632 0.97290 1.00907 0.95578 1.21639 0.93717 0.99610 0.99783 1.20152 0.98725 1.02049 0.86536 1.22142 0.96699 0.82831 0.99936 0.93680 0.78823 0.90977 0.92314 0.86524 0.91992 0.88167 0.85576 0.79673 0.81837 0.90439 0.86037 0.87574 0.93182 0.90154 0.88476 0.89321 0.90605 0.94069 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.52 13.06 21.65 0.28 -58.24 16 2 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.96 47.98 29.55 68.60 2.03 50.01 16 4 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.25 -14.25 9.93 84.03 0.83 -13.42 16 8 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 9 N -0.73 -36.65 5.12 -323.26 -1.66 -38.31 16 10 C 0.17 6.42 2.91 44.92 0.13 6.55 16 11 H 0.02 1.08 8.08 -2.39 -0.02 1.06 16 12 C -0.12 -3.23 5.36 30.62 0.16 -3.07 16 13 C -0.12 -2.00 6.08 30.67 0.19 -1.81 16 14 C 0.10 1.20 6.34 86.36 0.55 1.75 16 15 N -0.59 -14.86 2.98 -819.76 -2.44 -17.30 16 16 C 0.49 13.69 7.77 87.66 0.68 14.37 16 17 O -0.59 -24.32 15.84 -3.03 -0.05 -24.37 16 18 C 0.10 1.61 5.07 85.63 0.43 2.04 16 19 N -0.27 -6.89 2.81 -338.78 -0.95 -7.85 16 20 N -0.13 -4.38 13.19 37.02 0.49 -3.89 16 21 N -0.30 -10.29 12.40 -48.96 -0.61 -10.90 16 22 C -0.04 -1.13 7.11 41.76 0.30 -0.83 16 23 C 0.00 -0.09 6.77 41.52 0.28 0.20 16 24 C -0.05 -0.60 5.95 29.94 0.18 -0.43 16 25 C -0.12 -1.30 5.90 30.77 0.18 -1.12 16 26 C -0.11 -1.11 5.90 30.79 0.18 -0.93 16 27 C -0.04 -0.63 6.30 29.98 0.19 -0.44 16 28 C 0.11 3.99 5.99 86.22 0.52 4.51 16 29 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.38 19.85 7.80 -92.71 -0.72 19.13 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.13 0.42 5.93 -2.39 -0.01 0.41 16 37 H 0.19 0.92 7.77 -2.39 -0.02 0.91 16 38 H 0.16 1.80 7.69 -2.39 -0.02 1.78 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.11 0.61 8.14 -2.38 -0.02 0.60 16 42 H 0.05 0.79 8.12 -2.38 -0.02 0.77 16 43 H 0.08 0.65 8.12 -2.38 -0.02 0.63 16 44 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.04 1.90 7.01 -2.39 -0.02 1.89 16 48 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -89.98 383.50 2.61 -87.38 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.25 Total: 19.36 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.27 Total: 4.11 kcal Atomic # 7 Polarization: -131.60 SS G_CDS: -4.89 Total: -136.49 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -89.98 2.61 -87.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.096 kcal (2) G-P(sol) polarization free energy of solvation -89.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds