Wall clock time and date at job start Tue Mar 31 2020 18:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 C 1.53003 * 109.45737 * 181.26452 * 12 11 10 14 14 N 1.46490 * 109.47487 * 64.93226 * 13 12 11 15 15 C 1.34778 * 120.00290 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99665 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00085 * 179.97438 * 15 14 13 18 18 H 1.08994 * 109.46263 * 300.03668 * 17 15 14 19 19 C 1.53106 * 109.45506 * 180.08270 * 17 15 14 20 20 C 1.53428 * 109.57844 * 169.91233 * 19 17 15 21 21 C 1.50596 * 108.33278 * 49.82168 * 20 19 17 22 22 N 1.32908 * 129.16386 * 163.38316 * 21 20 19 23 23 N 1.29013 * 108.63758 * 180.21281 * 22 21 20 24 24 N 1.29108 * 110.26172 * 359.97395 * 23 22 21 25 25 H 0.97001 * 126.01131 * 179.97438 * 24 23 22 26 26 C 1.34404 * 107.98340 * 359.94231 * 24 23 22 27 27 C 1.50529 * 129.25446 * 180.13816 * 26 24 23 28 28 C 1.53033 * 109.53734 * 61.24440 * 12 11 10 29 29 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 30 30 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 31 31 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 32 32 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 33 33 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 34 34 H 1.09002 * 109.38821 * 65.51517 * 11 10 9 35 35 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 36 36 H 1.09000 * 109.46488 * 184.93734 * 13 12 11 37 37 H 1.09004 * 109.46888 * 304.93024 * 13 12 11 38 38 H 0.97004 * 120.00007 * 0.02562 * 14 13 12 39 39 H 1.08999 * 109.45690 * 289.94535 * 19 17 15 40 40 H 1.08996 * 109.45410 * 49.88324 * 19 17 15 41 41 H 1.09000 * 109.69222 * 290.10813 * 20 19 17 42 42 H 1.09010 * 109.72211 * 169.54629 * 20 19 17 43 43 H 1.08999 * 109.69368 * 43.85972 * 27 26 24 44 44 H 1.09002 * 109.69361 * 283.27615 * 27 26 24 45 45 H 1.09000 * 109.50059 * 178.68310 * 28 12 11 46 46 H 1.09001 * 109.52872 * 58.59946 * 28 12 11 47 47 H 1.08999 * 109.58741 * 246.15851 * 29 9 7 48 48 H 1.08998 * 109.58390 * 6.58234 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 6 1.4098 -5.4758 3.3616 14 7 0.2647 -5.5918 4.2678 15 6 0.3584 -6.3489 5.3788 16 8 1.3910 -6.9339 5.6286 17 6 -0.8195 -6.4677 6.3113 18 1 -1.0864 -5.4799 6.6868 19 6 -0.4500 -7.3770 7.4863 20 6 -1.5446 -7.3016 8.5588 21 6 -2.8778 -7.5111 7.8905 22 7 -4.0499 -7.8216 8.4346 23 7 -4.9303 -7.9090 7.4956 24 7 -4.3869 -7.6678 6.3495 25 1 -4.8394 -7.6724 5.4915 26 6 -3.0841 -7.4086 6.5543 27 6 -2.0124 -7.0662 5.5542 28 6 2.1920 -4.5444 1.1790 29 6 1.8058 -3.6602 -0.0109 30 1 -0.4851 -0.8358 -0.0842 31 1 0.3030 -1.2180 1.8801 32 1 -0.5696 -2.5799 1.1310 33 1 -0.0185 -3.1676 3.4388 34 1 1.6928 -2.7595 3.1656 35 1 0.1412 -4.9448 1.7039 36 1 1.6773 -6.4634 2.9858 37 1 2.2570 -5.0500 3.8993 38 1 -0.5614 -5.1242 4.0678 39 1 -0.3564 -8.4046 7.1348 40 1 0.4989 -7.0517 7.9127 41 1 -1.5233 -6.3224 9.0371 42 1 -1.3820 -8.0788 9.3057 43 1 -2.3962 -6.3385 4.8392 44 1 -1.6988 -7.9681 5.0286 45 1 2.3893 -5.5580 0.8302 46 1 3.0866 -4.1429 1.6552 47 1 0.9670 -4.1093 -0.5427 48 1 2.6572 -3.5613 -0.6842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002043421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:20 Heat of formation + Delta-G solvation = 52.997380 kcal Electronic energy + Delta-G solvation = -28618.734047 eV Core-core repulsion = 24710.015776 eV Total energy + Delta-G solvation = -3908.718271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.83911 -40.30360 -38.23882 -36.92337 -35.22499 -34.29186 -33.18403 -31.16602 -30.69589 -30.40416 -29.94120 -26.92239 -25.12285 -24.10624 -23.38427 -23.13460 -22.40642 -21.23898 -20.84901 -19.82568 -19.22277 -18.60359 -17.56345 -17.21519 -16.58344 -16.04728 -15.94559 -14.90526 -14.49582 -14.46500 -14.35052 -14.23335 -14.14809 -13.94766 -13.59540 -13.55747 -13.42565 -12.76887 -12.64314 -12.44829 -12.36897 -12.03132 -11.84555 -11.72020 -11.61231 -11.46071 -11.00286 -10.98628 -10.74745 -10.71125 -10.50703 -10.40990 -10.18824 -10.08242 -9.89910 -9.80964 -9.32140 -9.30460 -9.15693 -8.43256 -6.94501 -6.12180 -3.29138 1.12557 2.13193 2.19473 2.48981 2.98451 3.46036 3.49153 3.67012 3.76546 4.03426 4.25409 4.28151 4.49159 4.54934 4.61709 4.79583 4.87642 4.93789 4.98043 5.04332 5.11822 5.14459 5.26550 5.28775 5.35677 5.46497 5.58746 5.67952 5.68838 5.74116 5.78289 5.88564 5.91698 5.92586 6.08537 6.21775 6.30349 6.37745 6.41025 6.42025 6.53480 6.64376 6.75111 6.99251 7.10802 7.32910 7.95518 8.02672 8.05745 8.52433 9.06291 9.79202 10.23444 11.16262 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.002254 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.432278 B =12418.683696 C =13041.776024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.024 4.024 3 Si 1.063 2.937 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.349 4.349 8 H 0.055 0.945 9 N -0.599 5.599 10 C 0.150 3.850 11 C -0.130 4.130 12 C -0.090 4.090 13 C 0.123 3.877 14 N -0.723 5.723 15 C 0.517 3.483 16 O -0.537 6.537 17 C -0.103 4.103 18 H 0.107 0.893 19 C -0.100 4.100 20 C -0.035 4.035 21 C -0.014 4.014 22 N -0.258 5.258 23 N -0.088 5.088 24 N -0.381 5.381 25 H 0.449 0.551 26 C -0.012 4.012 27 C -0.038 4.038 28 C -0.125 4.125 29 C 0.148 3.852 30 H 0.268 0.732 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.015 0.985 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -15.621 11.827 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.226 4.226 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.478 4.478 8 H 0.073 0.927 9 N -0.323 5.323 10 C 0.024 3.976 11 C -0.169 4.169 12 C -0.109 4.109 13 C 0.000 4.000 14 N -0.375 5.375 15 C 0.302 3.698 16 O -0.413 6.413 17 C -0.125 4.125 18 H 0.125 0.875 19 C -0.138 4.138 20 C -0.074 4.074 21 C -0.154 4.154 22 N -0.124 5.124 23 N -0.067 5.067 24 N -0.100 5.100 25 H 0.295 0.705 26 C -0.148 4.148 27 C -0.078 4.078 28 C -0.165 4.165 29 C 0.022 3.978 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.033 0.967 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.571 -14.729 12.921 20.370 hybrid contribution 0.277 -1.192 -1.474 1.916 sum -5.294 -15.920 11.447 20.310 Atomic orbital electron populations 1.70793 1.06590 1.30234 1.48093 1.25843 0.96536 1.01471 0.98769 0.83544 0.74821 0.76076 0.76249 1.21083 1.21948 1.22043 1.19975 0.97234 0.88369 1.42199 0.92674 1.44103 1.45981 1.01369 1.40863 1.20845 0.90359 0.99002 0.87364 1.22068 1.00828 0.94888 0.99112 1.21298 0.99496 0.95525 0.94584 1.21561 0.88274 0.99789 0.90381 1.46126 1.17377 1.49961 1.24015 1.20358 0.89146 0.78792 0.81481 1.90720 1.30918 1.45996 1.73714 1.21377 0.92796 1.02388 0.95942 0.87495 1.21478 0.98661 1.00171 0.93525 1.20036 0.86422 1.03580 0.97358 1.21800 0.96483 1.06273 0.90845 1.74842 0.98661 1.15549 1.23320 1.78594 1.21168 1.20315 0.86639 1.44714 1.07445 1.46777 1.11075 0.70511 1.21752 0.86635 1.08510 0.97853 1.20133 0.90454 1.02385 0.94823 1.21979 0.97503 0.99364 0.97642 1.20880 0.97516 0.86403 0.93037 0.92112 0.90282 0.96799 0.93397 0.92104 0.91386 0.91768 0.91435 0.76481 0.90658 0.89155 0.89491 0.89129 0.89127 0.88770 0.92787 0.91913 0.96710 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 12.42 55.49 0.69 -25.95 16 2 C -0.02 -0.67 4.69 -17.43 -0.08 -0.75 16 3 Si 1.06 24.64 29.98 -169.99 -5.10 19.54 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.35 -9.43 9.49 -15.06 -0.14 -9.58 16 8 H 0.06 1.51 7.94 -52.48 -0.42 1.09 16 9 N -0.60 -14.24 2.85 -172.58 -0.49 -14.73 16 10 C 0.15 3.24 4.66 -3.93 -0.02 3.22 16 11 C -0.13 -2.12 5.23 -26.83 -0.14 -2.26 16 12 C -0.09 -1.25 2.19 -90.58 -0.20 -1.45 16 13 C 0.12 1.49 5.06 -4.05 -0.02 1.47 16 14 N -0.72 -7.09 5.17 -60.30 -0.31 -7.40 16 15 C 0.52 5.30 7.13 -10.99 -0.08 5.22 16 16 O -0.54 -7.60 15.81 5.55 0.09 -7.51 16 17 C -0.10 -0.73 2.50 -91.49 -0.23 -0.96 16 18 H 0.11 0.66 8.12 -51.93 -0.42 0.23 16 19 C -0.10 -0.73 4.64 -26.46 -0.12 -0.86 16 20 C -0.03 -0.25 6.30 -27.71 -0.17 -0.42 16 21 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 22 N -0.26 -3.06 12.40 33.16 0.41 -2.65 16 23 N -0.09 -0.95 13.40 60.35 0.81 -0.14 16 24 N -0.38 -2.75 6.97 33.39 0.23 -2.51 16 25 H 0.45 1.50 8.96 -190.07 -1.70 -0.20 16 26 C -0.01 -0.09 7.15 -82.49 -0.59 -0.68 16 27 C -0.04 -0.21 5.43 -27.74 -0.15 -0.36 16 28 C -0.13 -1.95 5.36 -26.61 -0.14 -2.09 16 29 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16 30 H 0.27 7.79 6.69 -40.82 -0.27 7.52 16 31 H 0.08 1.96 6.32 -51.93 -0.33 1.63 16 32 H 0.01 0.30 7.86 -51.93 -0.41 -0.10 16 33 H 0.05 0.66 7.15 -51.93 -0.37 0.28 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.40 3.16 7.32 -40.82 -0.30 2.86 16 39 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 40 H 0.09 0.71 7.76 -51.93 -0.40 0.31 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.09 0.34 7.90 -51.93 -0.41 -0.07 16 44 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -34.41 377.24 -9.58 -43.99 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.89 Total: -0.97 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.71 Total: -7.34 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 1.34 Total: -53.39 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.09 Total: -7.51 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.10 Total: 19.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.41 -9.58 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002043421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.987 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds