Wall clock time and date at job start Tue Mar 31 2020 18:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 C 1.53003 * 109.45737 * 181.26452 * 12 11 10 14 14 N 1.46490 * 109.47487 * 64.93226 * 13 12 11 15 15 C 1.34778 * 120.00290 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99665 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00085 * 179.97438 * 15 14 13 18 18 H 1.08994 * 109.46263 * 300.03668 * 17 15 14 19 19 C 1.53106 * 109.45506 * 180.08270 * 17 15 14 20 20 C 1.53428 * 109.57844 * 169.91233 * 19 17 15 21 21 C 1.50596 * 108.33278 * 49.82168 * 20 19 17 22 22 N 1.32908 * 129.16386 * 163.38316 * 21 20 19 23 23 N 1.29013 * 108.63758 * 180.21281 * 22 21 20 24 24 N 1.29108 * 110.26172 * 359.97395 * 23 22 21 25 25 H 0.97001 * 126.01131 * 179.97438 * 24 23 22 26 26 C 1.34404 * 107.98340 * 359.94231 * 24 23 22 27 27 C 1.50529 * 129.25446 * 180.13816 * 26 24 23 28 28 C 1.53033 * 109.53734 * 61.24440 * 12 11 10 29 29 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 30 30 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 31 31 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 32 32 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 33 33 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 34 34 H 1.09002 * 109.38821 * 65.51517 * 11 10 9 35 35 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 36 36 H 1.09000 * 109.46488 * 184.93734 * 13 12 11 37 37 H 1.09004 * 109.46888 * 304.93024 * 13 12 11 38 38 H 0.97004 * 120.00007 * 0.02562 * 14 13 12 39 39 H 1.08999 * 109.45690 * 289.94535 * 19 17 15 40 40 H 1.08996 * 109.45410 * 49.88324 * 19 17 15 41 41 H 1.09000 * 109.69222 * 290.10813 * 20 19 17 42 42 H 1.09010 * 109.72211 * 169.54629 * 20 19 17 43 43 H 1.08999 * 109.69368 * 43.85972 * 27 26 24 44 44 H 1.09002 * 109.69361 * 283.27615 * 27 26 24 45 45 H 1.09000 * 109.50059 * 178.68310 * 28 12 11 46 46 H 1.09001 * 109.52872 * 58.59946 * 28 12 11 47 47 H 1.08999 * 109.58741 * 246.15851 * 29 9 7 48 48 H 1.08998 * 109.58390 * 6.58234 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 6 1.4098 -5.4758 3.3616 14 7 0.2647 -5.5918 4.2678 15 6 0.3584 -6.3489 5.3788 16 8 1.3910 -6.9339 5.6286 17 6 -0.8195 -6.4677 6.3113 18 1 -1.0864 -5.4799 6.6868 19 6 -0.4500 -7.3770 7.4863 20 6 -1.5446 -7.3016 8.5588 21 6 -2.8778 -7.5111 7.8905 22 7 -4.0499 -7.8216 8.4346 23 7 -4.9303 -7.9090 7.4956 24 7 -4.3869 -7.6678 6.3495 25 1 -4.8394 -7.6724 5.4915 26 6 -3.0841 -7.4086 6.5543 27 6 -2.0124 -7.0662 5.5542 28 6 2.1920 -4.5444 1.1790 29 6 1.8058 -3.6602 -0.0109 30 1 -0.4851 -0.8358 -0.0842 31 1 0.3030 -1.2180 1.8801 32 1 -0.5696 -2.5799 1.1310 33 1 -0.0185 -3.1676 3.4388 34 1 1.6928 -2.7595 3.1656 35 1 0.1412 -4.9448 1.7039 36 1 1.6773 -6.4634 2.9858 37 1 2.2570 -5.0500 3.8993 38 1 -0.5614 -5.1242 4.0678 39 1 -0.3564 -8.4046 7.1348 40 1 0.4989 -7.0517 7.9127 41 1 -1.5233 -6.3224 9.0371 42 1 -1.3820 -8.0788 9.3057 43 1 -2.3962 -6.3385 4.8392 44 1 -1.6988 -7.9681 5.0286 45 1 2.3893 -5.5580 0.8302 46 1 3.0866 -4.1429 1.6552 47 1 0.9670 -4.1093 -0.5427 48 1 2.6572 -3.5613 -0.6842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002043421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:19 Heat of formation + Delta-G solvation = 29.063317 kcal Electronic energy + Delta-G solvation = -28619.771906 eV Core-core repulsion = 24710.015776 eV Total energy + Delta-G solvation = -3909.756130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.48911 -41.13545 -39.60791 -37.65580 -36.51962 -34.98395 -34.60273 -32.48192 -31.65356 -31.33636 -31.19441 -28.28349 -26.11386 -25.36171 -24.22328 -23.91222 -23.74067 -22.61984 -21.66292 -20.80316 -20.37644 -19.40000 -19.18447 -18.05861 -17.27871 -16.90072 -16.71820 -16.29201 -16.06144 -15.49159 -15.39199 -15.13613 -15.09717 -15.07522 -14.87591 -14.68382 -14.39926 -14.03543 -13.87889 -13.40699 -13.31758 -13.12174 -13.04766 -12.62887 -12.60504 -12.50806 -12.21726 -12.07136 -12.00533 -11.91793 -11.79155 -11.66703 -11.59923 -11.33880 -11.31381 -11.11362 -10.79670 -10.45778 -10.04931 -9.92825 -8.90650 -8.22856 -5.38628 0.51075 1.43362 1.55241 1.58415 1.64855 1.83774 1.85028 2.20069 2.65798 3.19241 3.22214 3.45651 3.57577 3.67452 3.75132 3.81260 3.89667 3.94170 3.97606 4.01917 4.26082 4.36789 4.42646 4.48470 4.48628 4.55231 4.57394 4.66008 4.76222 4.80227 4.80548 4.86590 4.95838 4.98616 5.09427 5.12570 5.15582 5.21153 5.22607 5.28586 5.29695 5.34340 5.45647 5.61418 5.85431 5.95992 6.42289 6.57150 7.09808 7.25875 7.37843 7.80790 8.24181 9.01804 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.002254 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.432278 B =12418.683696 C =13041.776024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.075 4.075 3 Si 1.110 2.890 4 H -0.291 1.291 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.354 4.354 8 H 0.046 0.954 9 N -0.620 5.620 10 C 0.154 3.846 11 C -0.116 4.116 12 C -0.077 4.077 13 C 0.136 3.864 14 N -0.715 5.715 15 C 0.521 3.479 16 O -0.577 6.577 17 C -0.095 4.095 18 H 0.123 0.877 19 C -0.095 4.095 20 C -0.030 4.030 21 C -0.032 4.032 22 N -0.295 5.295 23 N -0.118 5.118 24 N -0.364 5.364 25 H 0.465 0.535 26 C 0.002 3.998 27 C -0.033 4.033 28 C -0.116 4.116 29 C 0.142 3.858 30 H 0.256 0.744 31 H 0.039 0.961 32 H 0.009 0.991 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.413 0.587 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.019 0.981 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 -16.498 11.971 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.271 4.271 3 Si 0.935 3.065 4 H -0.217 1.217 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.484 4.484 8 H 0.064 0.936 9 N -0.346 5.346 10 C 0.029 3.971 11 C -0.155 4.155 12 C -0.096 4.096 13 C 0.012 3.988 14 N -0.367 5.367 15 C 0.308 3.692 16 O -0.456 6.456 17 C -0.117 4.117 18 H 0.141 0.859 19 C -0.133 4.133 20 C -0.069 4.069 21 C -0.173 4.173 22 N -0.160 5.160 23 N -0.097 5.097 24 N -0.086 5.086 25 H 0.314 0.686 26 C -0.135 4.135 27 C -0.072 4.072 28 C -0.156 4.156 29 C 0.017 3.983 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.250 0.750 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.037 0.963 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.557 -15.638 13.054 21.115 hybrid contribution 0.293 -0.964 -1.590 1.882 sum -5.264 -16.602 11.464 20.851 Atomic orbital electron populations 1.70900 1.07401 1.29472 1.50690 1.27072 0.96674 1.04572 0.98813 0.82909 0.73923 0.72460 0.77193 1.21746 1.20348 1.20791 1.20199 0.96911 0.89899 1.41408 0.93631 1.44379 1.46292 1.02020 1.41864 1.20753 0.89821 0.97988 0.88567 1.21889 1.01023 0.95208 0.97414 1.21149 0.99382 0.94176 0.94899 1.21256 0.88551 0.99319 0.89692 1.46011 1.17243 1.49909 1.23575 1.20776 0.89296 0.77735 0.81348 1.90716 1.32718 1.47632 1.74569 1.21338 0.91951 1.03334 0.95100 0.85872 1.21401 0.98344 0.99859 0.93709 1.20042 0.85398 1.04176 0.97255 1.22203 0.96549 1.06610 0.91905 1.74795 0.99795 1.16911 1.24485 1.78523 1.21639 1.21928 0.87578 1.44726 1.07419 1.45319 1.11117 0.68563 1.21972 0.86884 1.07068 0.97595 1.20212 0.89055 1.03489 0.94476 1.21849 0.97604 0.99869 0.96237 1.21043 0.97149 0.85351 0.94770 0.93452 0.94248 0.97283 0.90204 0.93772 0.89883 0.91058 0.92901 0.74985 0.91353 0.89806 0.88582 0.88987 0.86292 0.87935 0.89607 0.93076 0.96276 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.86 12.42 21.65 0.27 -55.59 16 2 C -0.07 -4.17 4.69 84.86 0.40 -3.77 16 3 Si 1.11 50.11 29.98 68.60 2.06 52.16 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.35 -19.43 9.49 84.03 0.80 -18.63 16 8 H 0.05 2.53 7.94 -2.91 -0.02 2.51 16 9 N -0.62 -29.61 2.85 -699.93 -2.00 -31.60 16 10 C 0.15 6.63 4.66 86.22 0.40 7.03 16 11 C -0.12 -3.58 5.23 30.53 0.16 -3.42 16 12 C -0.08 -1.90 2.19 -10.77 -0.02 -1.93 16 13 C 0.14 2.84 5.06 86.38 0.44 3.28 16 14 N -0.72 -11.35 5.17 -463.07 -2.40 -13.75 16 15 C 0.52 9.12 7.13 87.66 0.63 9.75 16 16 O -0.58 -15.17 15.81 -3.05 -0.05 -15.22 16 17 C -0.10 -1.05 2.50 -11.36 -0.03 -1.08 16 18 H 0.12 1.04 8.12 -2.39 -0.02 1.02 16 19 C -0.09 -1.22 4.64 30.77 0.14 -1.07 16 20 C -0.03 -0.38 6.30 29.96 0.19 -0.19 16 21 C -0.03 -0.55 7.11 41.75 0.30 -0.26 16 22 N -0.29 -6.84 12.40 -48.99 -0.61 -7.45 16 23 N -0.12 -2.45 13.40 37.02 0.50 -1.96 16 24 N -0.36 -4.50 6.97 -48.27 -0.34 -4.83 16 25 H 0.47 1.96 8.96 -219.68 -1.97 -0.01 16 26 C 0.00 0.02 7.15 41.50 0.30 0.32 16 27 C -0.03 -0.24 5.43 29.94 0.16 -0.08 16 28 C -0.12 -3.36 5.36 30.67 0.16 -3.19 16 29 C 0.14 5.47 6.52 86.36 0.56 6.03 16 30 H 0.26 15.27 6.69 -92.71 -0.62 14.65 16 31 H 0.04 1.99 6.32 -2.39 -0.02 1.97 16 32 H 0.01 0.40 7.86 -2.39 -0.02 0.38 16 33 H 0.08 1.94 7.15 -2.38 -0.02 1.92 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.41 4.58 7.32 -92.70 -0.68 3.91 16 39 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 40 H 0.08 1.21 7.76 -2.39 -0.02 1.19 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.12 0.28 7.90 -2.39 -0.02 0.26 16 44 H 0.10 0.70 8.12 -2.39 -0.02 0.68 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.04 1.80 7.93 -2.39 -0.02 1.78 16 Total: -1.00 -77.30 377.24 0.51 -76.79 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -1.51 Total: 8.68 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.58 Total: -7.22 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.57 Total: -115.19 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.05 Total: -15.22 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.06 Total: 52.16 kcal Total: -77.30 0.51 -76.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002043421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.850 kcal (2) G-P(sol) polarization free energy of solvation -77.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds