Wall clock time and date at job start Tue Mar 31 2020 17:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11 15 15 N 1.46495 * 109.49961 * 181.31820 * 13 12 11 16 16 C 1.34780 * 120.00548 * 154.99922 * 15 13 12 17 17 O 1.21283 * 119.99291 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00365 * 179.97438 * 16 15 13 19 19 N 1.46493 * 109.47235 * 179.97438 * 18 16 15 20 20 N 1.29111 * 126.00795 * 90.02482 * 19 18 16 21 21 N 1.29025 * 110.25846 * 179.90860 * 20 19 18 22 22 C 1.32904 * 108.63300 * 359.97438 * 21 20 19 23 23 C 1.34399 * 126.00715 * 269.71185 * 19 18 16 24 24 C 1.50534 * 129.25086 * 0.88570 * 23 19 18 25 25 C 1.53439 * 108.38375 * 163.08894 * 24 23 19 26 26 C 1.53112 * 109.54546 * 49.51032 * 25 24 23 27 27 C 1.50608 * 129.15615 * 180.18402 * 22 21 20 28 28 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 29 29 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 30 30 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 31 31 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 32 32 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 33 33 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 34 34 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 35 35 H 1.09000 * 109.46120 * 178.61322 * 12 11 10 36 36 H 0.97005 * 119.99741 * 334.99221 * 15 13 12 37 37 H 1.09001 * 109.47273 * 299.99869 * 18 16 15 38 38 H 1.09006 * 109.47472 * 59.99517 * 18 16 15 39 39 H 1.09006 * 109.83752 * 43.26674 * 24 23 19 40 40 H 1.09000 * 109.53024 * 282.73478 * 24 23 19 41 41 H 1.09000 * 109.45990 * 289.48930 * 25 24 23 42 42 H 1.08994 * 109.45972 * 169.53004 * 25 24 23 43 43 H 1.09007 * 109.45576 * 169.89461 * 26 25 24 44 44 H 1.08999 * 109.45827 * 49.95895 * 26 25 24 45 45 H 1.08998 * 109.68888 * 283.16211 * 27 22 21 46 46 H 1.08991 * 109.69321 * 43.74602 * 27 22 21 47 47 H 1.08998 * 109.59046 * 353.41506 * 28 9 7 48 48 H 1.08998 * 109.58688 * 113.84707 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1958 -3.5676 1.4742 15 7 5.9544 -3.8747 0.3722 16 6 5.6075 -5.1011 -0.0661 17 8 4.4526 -5.4652 0.0020 18 6 6.6546 -6.0200 -0.6409 19 7 6.0294 -7.2829 -1.0411 20 7 5.5262 -7.5468 -2.2005 21 7 5.0581 -8.7490 -2.2211 22 6 5.2591 -9.3035 -1.0301 23 6 5.8841 -8.3725 -0.2679 24 6 6.2885 -8.5832 1.1668 25 6 5.5397 -9.8093 1.7056 26 6 5.6963 -10.9761 0.7267 27 6 4.8996 -10.6856 -0.5517 28 6 4.2482 -2.2197 -0.2010 29 1 -0.4850 -0.8368 -0.0738 30 1 4.5577 0.3873 0.9041 31 1 3.0150 0.2936 1.7896 32 1 5.0019 -0.3775 3.1898 33 1 3.7953 -1.6762 3.0220 34 1 6.3220 -1.3817 1.3344 35 1 6.1096 -2.5274 2.6796 36 1 6.8781 -3.5836 0.3180 37 1 7.1130 -5.5494 -1.5107 38 1 7.4188 -6.2156 0.1114 39 1 6.0278 -7.7048 1.7573 40 1 7.3633 -8.7562 1.2207 41 1 4.4825 -9.5688 1.8176 42 1 5.9527 -10.0901 2.6744 43 1 5.3217 -11.8899 1.1881 44 1 6.7499 -11.1016 0.4769 45 1 3.8319 -10.7338 -0.3374 46 1 5.1544 -11.4174 -1.3181 47 1 3.6911 -2.9191 -0.8243 48 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008537533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:45 Heat of formation + Delta-G solvation = 73.919115 kcal Electronic energy + Delta-G solvation = -29234.671013 eV Core-core repulsion = 25326.859976 eV Total energy + Delta-G solvation = -3907.811037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.51514 -40.01649 -37.82674 -37.31260 -34.96981 -34.63266 -32.70319 -30.99724 -30.81949 -30.31940 -29.84129 -28.05783 -25.08550 -24.40035 -23.24232 -22.87346 -21.88741 -21.61810 -20.52340 -19.86796 -19.68520 -17.84302 -17.55071 -17.30036 -16.18004 -15.82876 -15.68681 -15.17839 -15.03190 -14.32911 -14.26356 -14.22290 -14.08905 -13.86142 -13.80680 -13.58201 -13.51483 -13.00895 -12.77507 -12.45257 -12.42748 -12.17375 -11.67612 -11.64793 -11.45794 -11.33360 -11.28764 -11.18997 -10.98340 -10.72510 -10.60173 -10.53801 -10.17977 -9.91885 -9.76419 -9.64412 -9.24518 -9.10337 -8.92692 -8.49040 -7.07744 -6.24582 -3.36729 1.38334 2.01143 2.33851 2.49109 3.01169 3.36127 3.51199 3.67065 3.91290 4.15030 4.33164 4.36821 4.48746 4.50070 4.56448 4.60583 4.70892 4.97213 5.03505 5.07103 5.09200 5.18009 5.20449 5.27517 5.34073 5.47622 5.51358 5.54791 5.64811 5.70702 5.79027 5.82342 5.86346 5.92371 5.94954 6.09480 6.14297 6.22312 6.30143 6.31548 6.38696 6.52546 6.60342 6.67422 6.83622 7.32299 7.98617 8.07063 8.44447 8.45208 9.06621 9.56950 10.17818 11.13810 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.002680 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.485558 B =10447.143449 C =10879.796277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 1.070 2.930 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.345 4.345 8 H 0.065 0.935 9 N -0.599 5.599 10 C 0.120 3.880 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.089 0.911 15 N -0.715 5.715 16 C 0.496 3.504 17 O -0.510 6.510 18 C 0.095 3.905 19 N -0.268 5.268 20 N -0.082 5.082 21 N -0.260 5.260 22 C -0.021 4.021 23 C -0.010 4.010 24 C -0.046 4.046 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.033 4.033 28 C 0.142 3.858 29 H 0.264 0.736 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.398 0.602 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.424 -16.817 6.246 27.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.217 4.217 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.227 1.227 6 H -0.212 1.212 7 C -0.473 4.473 8 H 0.082 0.918 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.107 0.893 15 N -0.367 5.367 16 C 0.278 3.722 17 O -0.384 6.384 18 C -0.031 4.031 19 N -0.059 5.059 20 N -0.059 5.059 21 N -0.125 5.125 22 C -0.160 4.160 23 C -0.143 4.143 24 C -0.085 4.085 25 C -0.153 4.153 26 C -0.156 4.156 27 C -0.072 4.072 28 C 0.015 3.985 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.232 0.768 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 20.043 -14.865 4.874 25.425 hybrid contribution 0.929 -1.577 0.873 2.028 sum 20.973 -16.442 5.747 27.262 Atomic orbital electron populations 1.70888 1.06030 1.30089 1.49014 1.26276 0.96642 1.01263 0.97487 0.83710 0.74639 0.75613 0.75912 1.22125 1.22687 1.21194 1.20254 0.85325 0.95158 1.46601 0.91754 1.44273 1.07256 1.36717 1.44126 1.21449 0.97298 0.92392 0.89397 1.22006 0.97627 0.98642 0.98919 1.21675 0.98413 0.97221 0.97965 1.21714 0.89504 0.90320 0.96387 0.89333 1.45999 1.12536 1.14706 1.63481 1.20335 0.89656 0.82884 0.79366 1.90869 1.19266 1.74640 1.53595 1.21872 0.95227 0.81927 1.04114 1.46253 1.39184 1.10780 1.09666 1.78627 1.13093 1.11140 1.03057 1.74800 1.16854 1.00348 1.20467 1.21608 1.04298 0.98886 0.91257 1.21743 1.07109 0.88067 0.97389 1.20189 1.00635 1.00074 0.87602 1.21579 1.01389 0.93695 0.98679 1.21632 1.00708 0.98324 0.94953 1.19952 1.00769 0.89524 0.96943 1.21139 0.92741 0.91847 0.92822 0.92600 0.95489 0.90575 0.92016 0.91603 0.91877 0.92433 0.76831 0.84528 0.85178 0.90156 0.89845 0.90948 0.90493 0.90582 0.91465 0.89931 0.89875 0.91923 0.96067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.20 13.70 55.49 0.76 -28.44 16 2 C -0.02 -0.45 5.24 -17.43 -0.09 -0.54 16 3 Si 1.07 26.50 24.73 -169.99 -4.20 22.29 16 4 H -0.29 -6.71 6.57 56.52 0.37 -6.34 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -6.72 6.80 56.52 0.38 -6.34 16 7 C -0.34 -10.02 9.87 -15.06 -0.15 -10.17 16 8 H 0.06 2.06 8.06 -52.49 -0.42 1.64 16 9 N -0.60 -14.53 2.73 -172.58 -0.47 -15.00 16 10 C 0.12 2.52 4.21 -3.71 -0.02 2.50 16 11 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 12 C -0.11 -1.53 5.36 -26.69 -0.14 -1.68 16 13 C 0.13 2.01 2.59 -68.03 -0.18 1.83 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 15 N -0.72 -8.24 5.08 -53.91 -0.27 -8.51 16 16 C 0.50 6.57 7.86 -10.99 -0.09 6.48 16 17 O -0.51 -9.88 16.09 5.55 0.09 -9.79 16 18 C 0.09 0.85 6.72 -5.20 -0.03 0.81 16 19 N -0.27 -3.51 2.82 -58.44 -0.16 -3.67 16 20 N -0.08 -1.35 13.19 60.35 0.80 -0.56 16 21 N -0.26 -4.33 12.40 33.17 0.41 -3.92 16 22 C -0.02 -0.28 7.11 -83.12 -0.59 -0.87 16 23 C -0.01 -0.12 6.76 -82.50 -0.56 -0.67 16 24 C -0.05 -0.36 5.94 -27.74 -0.16 -0.52 16 25 C -0.12 -0.79 5.90 -26.45 -0.16 -0.94 16 26 C -0.12 -0.76 5.89 -26.46 -0.16 -0.91 16 27 C -0.03 -0.30 6.30 -27.71 -0.17 -0.48 16 28 C 0.14 2.92 6.06 -3.93 -0.02 2.90 16 29 H 0.26 8.38 8.73 -40.82 -0.36 8.02 16 30 H 0.03 0.54 7.10 -51.93 -0.37 0.17 16 31 H 0.08 1.75 4.76 -51.93 -0.25 1.50 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.40 2.85 8.60 -40.82 -0.35 2.50 16 37 H 0.14 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.13 0.57 7.96 -51.93 -0.41 0.15 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 1.47 7.93 -51.93 -0.41 1.06 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -39.12 377.80 -7.77 -46.89 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.72 Total: -0.42 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.68 Total: -4.57 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 1.06 Total: -60.10 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -4.20 Total: 22.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.12 -7.77 -46.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008537533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.812 kcal (2) G-P(sol) polarization free energy of solvation -39.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds