Wall clock time and date at job start Tue Mar 31 2020 17:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11 15 15 N 1.46495 * 109.49961 * 181.31820 * 13 12 11 16 16 C 1.34780 * 120.00548 * 154.99922 * 15 13 12 17 17 O 1.21283 * 119.99291 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00365 * 179.97438 * 16 15 13 19 19 N 1.46493 * 109.47235 * 179.97438 * 18 16 15 20 20 N 1.29111 * 126.00795 * 90.02482 * 19 18 16 21 21 N 1.29025 * 110.25846 * 179.90860 * 20 19 18 22 22 C 1.32904 * 108.63300 * 359.97438 * 21 20 19 23 23 C 1.34399 * 126.00715 * 269.71185 * 19 18 16 24 24 C 1.50534 * 129.25086 * 0.88570 * 23 19 18 25 25 C 1.53439 * 108.38375 * 163.08894 * 24 23 19 26 26 C 1.53112 * 109.54546 * 49.51032 * 25 24 23 27 27 C 1.50608 * 129.15615 * 180.18402 * 22 21 20 28 28 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 29 29 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 30 30 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 31 31 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 32 32 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 33 33 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 34 34 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 35 35 H 1.09000 * 109.46120 * 178.61322 * 12 11 10 36 36 H 0.97005 * 119.99741 * 334.99221 * 15 13 12 37 37 H 1.09001 * 109.47273 * 299.99869 * 18 16 15 38 38 H 1.09006 * 109.47472 * 59.99517 * 18 16 15 39 39 H 1.09006 * 109.83752 * 43.26674 * 24 23 19 40 40 H 1.09000 * 109.53024 * 282.73478 * 24 23 19 41 41 H 1.09000 * 109.45990 * 289.48930 * 25 24 23 42 42 H 1.08994 * 109.45972 * 169.53004 * 25 24 23 43 43 H 1.09007 * 109.45576 * 169.89461 * 26 25 24 44 44 H 1.08999 * 109.45827 * 49.95895 * 26 25 24 45 45 H 1.08998 * 109.68888 * 283.16211 * 27 22 21 46 46 H 1.08991 * 109.69321 * 43.74602 * 27 22 21 47 47 H 1.08998 * 109.59046 * 353.41506 * 28 9 7 48 48 H 1.08998 * 109.58688 * 113.84707 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1958 -3.5676 1.4742 15 7 5.9544 -3.8747 0.3722 16 6 5.6075 -5.1011 -0.0661 17 8 4.4526 -5.4652 0.0020 18 6 6.6546 -6.0200 -0.6409 19 7 6.0294 -7.2829 -1.0411 20 7 5.5262 -7.5468 -2.2005 21 7 5.0581 -8.7490 -2.2211 22 6 5.2591 -9.3035 -1.0301 23 6 5.8841 -8.3725 -0.2679 24 6 6.2885 -8.5832 1.1668 25 6 5.5397 -9.8093 1.7056 26 6 5.6963 -10.9761 0.7267 27 6 4.8996 -10.6856 -0.5517 28 6 4.2482 -2.2197 -0.2010 29 1 -0.4850 -0.8368 -0.0738 30 1 4.5577 0.3873 0.9041 31 1 3.0150 0.2936 1.7896 32 1 5.0019 -0.3775 3.1898 33 1 3.7953 -1.6762 3.0220 34 1 6.3220 -1.3817 1.3344 35 1 6.1096 -2.5274 2.6796 36 1 6.8781 -3.5836 0.3180 37 1 7.1130 -5.5494 -1.5107 38 1 7.4188 -6.2156 0.1114 39 1 6.0278 -7.7048 1.7573 40 1 7.3633 -8.7562 1.2207 41 1 4.4825 -9.5688 1.8176 42 1 5.9527 -10.0901 2.6744 43 1 5.3217 -11.8899 1.1881 44 1 6.7499 -11.1016 0.4769 45 1 3.8319 -10.7338 -0.3374 46 1 5.1544 -11.4174 -1.3181 47 1 3.6911 -2.9191 -0.8243 48 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008537533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:44 Heat of formation + Delta-G solvation = 42.597869 kcal Electronic energy + Delta-G solvation = -29236.029204 eV Core-core repulsion = 25326.859976 eV Total energy + Delta-G solvation = -3909.169228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.48319 -41.20435 -39.30387 -37.98489 -36.22885 -35.86578 -34.47794 -32.65845 -31.83846 -31.19717 -30.97732 -29.11028 -26.96399 -25.15286 -24.54471 -23.65666 -23.58766 -22.80569 -21.63870 -21.21889 -20.54781 -19.44978 -18.83837 -18.44482 -17.20288 -17.14837 -16.80419 -16.48427 -16.06752 -15.91331 -15.48335 -15.20565 -15.17400 -14.96570 -14.80386 -14.70025 -14.52053 -14.41379 -14.12575 -13.73256 -13.60672 -13.44268 -13.09035 -12.76235 -12.59561 -12.58558 -12.27794 -12.10349 -11.99964 -11.84987 -11.77294 -11.61267 -11.52037 -11.40410 -11.36878 -11.28108 -10.89572 -10.71239 -10.32414 -9.86236 -9.17722 -8.56003 -5.67741 0.41257 1.19534 1.30755 1.37656 1.46940 1.54731 1.72979 2.00723 2.49762 3.04031 3.14617 3.27296 3.48357 3.54820 3.69758 3.77509 3.84900 3.90840 3.97692 3.98386 4.07513 4.10387 4.28029 4.37283 4.40032 4.53374 4.55940 4.58408 4.62852 4.67391 4.86112 4.87840 4.96342 4.98186 5.00823 5.05742 5.05960 5.16843 5.17407 5.18933 5.26976 5.31364 5.43330 5.47417 5.54865 5.67562 6.15949 6.36367 6.85837 7.07407 7.41533 7.46313 7.97838 8.74297 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.002680 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.485558 B =10447.143449 C =10879.796277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 1.119 2.881 4 H -0.257 1.257 5 H -0.308 1.308 6 H -0.260 1.260 7 C -0.338 4.338 8 H 0.006 0.994 9 N -0.619 5.619 10 C 0.109 3.891 11 C -0.128 4.128 12 C -0.103 4.103 13 C 0.140 3.860 14 H 0.046 0.954 15 N -0.691 5.691 16 C 0.494 3.506 17 O -0.582 6.582 18 C 0.095 3.905 19 N -0.269 5.269 20 N -0.131 5.131 21 N -0.303 5.303 22 C -0.044 4.044 23 C -0.003 4.003 24 C -0.045 4.045 25 C -0.116 4.116 26 C -0.110 4.110 27 C -0.036 4.036 28 C 0.142 3.858 29 H 0.243 0.757 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.427 0.573 37 H 0.165 0.835 38 H 0.191 0.809 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.048 0.952 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.010 0.990 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.354 -16.141 9.005 33.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.266 4.266 3 Si 0.941 3.059 4 H -0.183 1.183 5 H -0.237 1.237 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.023 0.977 9 N -0.345 5.345 10 C -0.015 4.015 11 C -0.167 4.167 12 C -0.140 4.140 13 C 0.034 3.966 14 H 0.064 0.936 15 N -0.345 5.345 16 C 0.279 3.721 17 O -0.461 6.461 18 C -0.028 4.028 19 N -0.060 5.060 20 N -0.108 5.108 21 N -0.167 5.167 22 C -0.185 4.185 23 C -0.138 4.138 24 C -0.084 4.084 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.075 4.075 28 C 0.015 3.985 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.266 0.734 37 H 0.182 0.818 38 H 0.208 0.792 39 H 0.099 0.901 40 H 0.140 0.860 41 H 0.067 0.933 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.029 0.971 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 26.080 -14.196 7.641 30.661 hybrid contribution -0.971 -1.911 0.005 2.143 sum 25.109 -16.106 7.646 30.795 Atomic orbital electron populations 1.71029 1.07492 1.28826 1.52326 1.27839 0.96462 1.05394 0.96914 0.83142 0.74070 0.70608 0.78034 1.18284 1.23662 1.18501 1.19999 0.87969 0.93091 1.45739 0.97656 1.44336 1.05865 1.38402 1.45859 1.21662 0.97293 0.92445 0.90076 1.21942 0.97898 0.99165 0.97731 1.21654 0.97686 0.96330 0.98369 1.21191 0.90086 0.90587 0.94762 0.93593 1.45642 1.13041 1.13521 1.62283 1.21138 0.89514 0.83465 0.77991 1.90863 1.22682 1.76151 1.56409 1.22323 0.94073 0.79823 1.06614 1.46577 1.38422 1.12058 1.08990 1.78503 1.15409 1.11599 1.05295 1.74707 1.18084 1.01106 1.22828 1.22371 1.04533 1.00872 0.90704 1.22521 1.05339 0.87115 0.98799 1.20461 1.02973 1.00504 0.84427 1.21635 1.00137 0.93467 1.00199 1.21627 1.00960 0.99006 0.93154 1.20145 1.00902 0.87756 0.98738 1.21198 0.92173 0.90762 0.94324 0.94808 0.92870 0.93035 0.87731 0.93981 0.88675 0.88369 0.73373 0.81768 0.79219 0.90108 0.85970 0.93310 0.87411 0.88491 0.90117 0.90785 0.89376 0.97084 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.02 13.70 21.65 0.30 -63.72 16 2 C -0.07 -4.47 5.24 84.86 0.44 -4.02 16 3 Si 1.12 53.22 24.73 68.60 1.70 54.92 16 4 H -0.26 -10.73 6.57 99.48 0.65 -10.08 16 5 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.26 -11.19 6.80 99.48 0.68 -10.52 16 7 C -0.34 -20.92 9.87 84.03 0.83 -20.09 16 8 H 0.01 0.40 8.06 -2.91 -0.02 0.37 16 9 N -0.62 -30.43 2.73 -699.92 -1.91 -32.34 16 10 C 0.11 4.30 4.21 86.36 0.36 4.66 16 11 C -0.13 -3.66 6.08 30.67 0.19 -3.48 16 12 C -0.10 -2.21 5.36 30.62 0.16 -2.04 16 13 C 0.14 4.28 2.59 44.93 0.12 4.39 16 14 H 0.05 1.82 7.58 -2.39 -0.02 1.80 16 15 N -0.69 -13.85 5.08 -442.85 -2.25 -16.10 16 16 C 0.49 12.53 7.86 87.65 0.69 13.22 16 17 O -0.58 -23.73 16.09 -3.04 -0.05 -23.78 16 18 C 0.10 1.43 6.72 85.63 0.58 2.01 16 19 N -0.27 -6.88 2.82 -338.80 -0.95 -7.83 16 20 N -0.13 -4.54 13.19 37.02 0.49 -4.05 16 21 N -0.30 -10.73 12.40 -48.98 -0.61 -11.34 16 22 C -0.04 -1.21 7.11 41.75 0.30 -0.91 16 23 C 0.00 -0.07 6.76 41.50 0.28 0.21 16 24 C -0.04 -0.56 5.94 29.94 0.18 -0.38 16 25 C -0.12 -1.29 5.90 30.78 0.18 -1.11 16 26 C -0.11 -1.14 5.89 30.77 0.18 -0.96 16 27 C -0.04 -0.67 6.30 29.96 0.19 -0.48 16 28 C 0.14 5.91 6.06 86.22 0.52 6.43 16 29 H 0.24 16.74 8.73 -92.71 -0.81 15.93 16 30 H 0.05 1.85 7.10 -2.39 -0.02 1.84 16 31 H 0.05 2.28 4.76 -2.39 -0.01 2.26 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.43 3.72 8.60 -92.70 -0.80 2.92 16 37 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.19 0.53 7.96 -2.38 -0.02 0.51 16 39 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.05 0.77 8.12 -2.39 -0.02 0.76 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.01 0.54 7.93 -2.39 -0.02 0.52 16 48 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -100.67 377.80 1.96 -98.71 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.05 Total: 8.09 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.20 Total: -2.56 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -4.93 Total: -135.38 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 53.22 SS G_CDS: 1.70 Total: 54.92 kcal Total: -100.67 1.96 -98.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008537533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.305 kcal (2) G-P(sol) polarization free energy of solvation -100.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds