Wall clock time and date at job start Tue Mar 31 2020 18:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00002 * 2 1 4 4 H 1.48504 * 109.46947 * 270.00167 * 3 2 1 5 5 H 1.48494 * 109.47345 * 30.00658 * 3 2 1 6 6 H 1.48501 * 109.47077 * 150.00465 * 3 2 1 7 7 C 1.38808 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 163.00730 * 7 2 1 9 9 N 1.36941 * 120.00211 * 343.01016 * 7 2 1 10 10 C 1.46971 * 120.76680 * 331.84683 * 9 7 2 11 11 C 1.53100 * 108.62086 * 234.30901 * 10 9 7 12 12 C 1.53161 * 109.57818 * 304.65963 * 11 10 9 13 13 H 1.08994 * 110.65977 * 299.02508 * 12 11 10 14 14 C 1.52706 * 109.44501 * 60.38432 * 12 11 10 15 15 H 1.08999 * 109.11916 * 181.42488 * 14 12 11 16 16 C 1.52855 * 109.43890 * 61.92353 * 14 12 11 17 17 C 1.53116 * 109.34808 * 61.89654 * 16 14 12 18 18 C 1.53143 * 109.48192 * 299.35745 * 17 16 14 19 19 N 1.46949 * 109.02196 * 54.07599 * 18 17 16 20 20 C 1.34776 * 120.85199 * 125.94307 * 19 18 17 21 21 O 1.21281 * 119.99983 * 179.97438 * 20 19 18 22 22 C 1.50696 * 119.99855 * 0.02562 * 20 19 18 23 23 C 1.52994 * 109.47258 * 179.97438 * 22 20 19 24 24 N 1.46502 * 109.47394 * 180.02562 * 23 22 20 25 25 C 1.35318 * 125.86824 * 124.71055 * 24 23 22 26 26 C 1.35355 * 106.17109 * 179.90852 * 25 24 23 27 27 N 1.33766 * 106.50012 * 0.34981 * 26 25 24 28 28 N 1.28639 * 108.88687 * 359.77959 * 27 26 25 29 29 C 1.44111 * 121.35092 * 151.66201 * 9 7 2 30 30 H 0.97005 * 120.00125 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.60898 * 114.57584 * 10 9 7 32 32 H 1.08991 * 109.76033 * 354.14002 * 10 9 7 33 33 H 1.08991 * 109.45619 * 184.62348 * 11 10 9 34 34 H 1.09002 * 109.44896 * 64.69001 * 11 10 9 35 35 H 1.09005 * 109.48956 * 301.93412 * 16 14 12 36 36 H 1.08991 * 109.49390 * 181.86387 * 16 14 12 37 37 H 1.09002 * 109.46545 * 179.35888 * 17 16 14 38 38 H 1.08994 * 109.46658 * 59.36006 * 17 16 14 39 39 H 1.09000 * 109.54782 * 294.21034 * 18 17 16 40 40 H 1.09005 * 109.61974 * 173.97626 * 18 17 16 41 41 H 1.09004 * 109.47330 * 59.99922 * 22 20 19 42 42 H 1.09000 * 109.46974 * 299.99972 * 22 20 19 43 43 H 1.09000 * 109.47111 * 299.99895 * 23 22 20 44 44 H 1.08997 * 109.47630 * 59.99957 * 23 22 20 45 45 H 1.08001 * 126.91165 * 0.02562 * 25 24 23 46 46 H 1.08001 * 126.74777 * 180.12765 * 26 25 24 47 47 H 1.08999 * 108.26729 * 6.35850 * 29 9 7 48 48 H 1.09004 * 109.66280 * 246.86253 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2225 -0.2739 9 7 1.3702 -2.3624 0.3455 10 6 0.2265 -2.3437 1.2683 11 6 0.5118 -3.3112 2.4200 12 6 0.8239 -4.7011 1.8574 13 1 -0.0256 -5.0878 1.2945 14 6 2.0538 -4.6202 0.9559 15 1 2.2561 -5.6066 0.5385 16 6 3.2586 -4.1644 1.7789 17 6 3.5429 -5.1946 2.8754 18 6 2.3247 -5.3097 3.7963 19 7 1.1353 -5.5986 2.9833 20 6 0.3522 -6.6609 3.2571 21 8 -0.6261 -6.8846 2.5762 22 6 0.6918 -7.5699 4.4101 23 6 -0.3489 -8.6875 4.5020 24 7 -0.0192 -9.5709 5.6233 25 6 -0.8410 -9.8890 6.6503 26 6 -0.1388 -10.7256 7.4497 27 7 1.0649 -10.8702 6.8843 28 7 1.1038 -10.1733 5.8038 29 6 1.7896 -3.6361 -0.1823 30 1 -0.4850 0.8401 0.0004 31 1 -0.6742 -2.6582 0.7409 32 1 0.0871 -1.3370 1.6621 33 1 -0.3616 -3.3702 3.0694 34 1 1.3662 -2.9513 2.9932 35 1 3.0431 -3.1981 2.2348 36 1 4.1295 -4.0745 1.1297 37 1 4.4088 -4.8772 3.4564 38 1 3.7465 -6.1635 2.4196 39 1 2.1817 -4.3706 4.3310 40 1 2.4819 -6.1166 4.5121 41 1 0.6915 -6.9965 5.3372 42 1 1.6789 -8.0042 4.2518 43 1 -1.3359 -8.2528 4.6605 44 1 -0.3492 -9.2610 3.5751 45 1 -1.8539 -9.5460 6.8006 46 1 -0.4815 -11.1831 8.3660 47 1 2.7060 -3.4845 -0.7528 48 1 1.0144 -4.0353 -0.8363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021571029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:29 Heat of formation + Delta-G solvation = 86.338296 kcal Electronic energy + Delta-G solvation = -29525.055327 eV Core-core repulsion = 25617.782826 eV Total energy + Delta-G solvation = -3907.272500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.50947 -40.58810 -38.46875 -35.79104 -35.51064 -33.03492 -32.40612 -31.46606 -31.23466 -30.04852 -29.78864 -26.13662 -25.67668 -24.46689 -22.97119 -22.57455 -22.12028 -21.76738 -21.28708 -19.19913 -18.16473 -17.91755 -16.96176 -16.78835 -16.52790 -15.93407 -15.70265 -15.20088 -14.94093 -14.69809 -14.43416 -14.20850 -13.85966 -13.61747 -13.54274 -13.18318 -13.10867 -12.68996 -12.62051 -12.36337 -12.29235 -12.11485 -11.75774 -11.46848 -11.24669 -11.17973 -10.95440 -10.81887 -10.71692 -10.57790 -10.44099 -10.28118 -10.15789 -10.02393 -9.87954 -9.70898 -9.67207 -9.46415 -8.60530 -8.35105 -6.72999 -5.85533 -3.28547 1.30603 1.97051 2.31167 2.52343 3.01470 3.32998 3.40556 3.41945 4.02293 4.20478 4.27683 4.40578 4.44619 4.72102 4.77441 4.88361 4.92481 5.00668 5.08230 5.09145 5.26564 5.31585 5.32759 5.42726 5.47705 5.51753 5.59401 5.65385 5.86483 5.87670 5.97173 6.01669 6.11375 6.24748 6.26200 6.30632 6.38855 6.45807 6.56681 6.75543 6.77596 6.83884 6.90459 7.27976 7.45529 7.60687 7.74366 8.09251 8.22996 8.40810 9.14781 9.80752 10.35917 11.23334 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002463 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.347325 B =11364.247629 C =11652.145195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.169 3.831 11 C -0.147 4.147 12 C 0.154 3.846 13 H 0.096 0.904 14 C -0.110 4.110 15 H 0.058 0.942 16 C -0.107 4.107 17 C -0.134 4.134 18 C 0.104 3.896 19 N -0.600 5.600 20 C 0.519 3.481 21 O -0.547 6.547 22 C -0.154 4.154 23 C 0.131 3.869 24 N -0.289 5.289 25 C -0.047 4.047 26 C -0.055 4.055 27 N -0.274 5.274 28 N -0.085 5.085 29 C 0.156 3.844 30 H 0.254 0.746 31 H 0.020 0.980 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.191 0.809 46 H 0.189 0.811 47 H 0.055 0.945 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 -15.622 12.927 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.304 5.304 10 C 0.042 3.958 11 C -0.187 4.187 12 C 0.053 3.947 13 H 0.114 0.886 14 C -0.132 4.132 15 H 0.077 0.923 16 C -0.145 4.145 17 C -0.172 4.172 18 C -0.019 4.019 19 N -0.332 5.332 20 C 0.306 3.694 21 O -0.426 6.426 22 C -0.195 4.195 23 C 0.010 3.990 24 N -0.083 5.083 25 C -0.199 4.199 26 C -0.213 4.213 27 N -0.140 5.140 28 N -0.066 5.066 29 C 0.028 3.972 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.208 0.792 46 H 0.206 0.794 47 H 0.074 0.926 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.012 -15.803 11.969 19.850 hybrid contribution -0.745 1.147 0.477 1.449 sum 0.266 -14.656 12.447 19.230 Atomic orbital electron populations 1.70028 1.05285 1.25604 1.53570 1.25046 0.95252 0.98459 1.00719 0.86322 0.79149 0.83676 0.77762 1.21370 1.21579 1.20479 1.19115 0.92548 0.84590 1.41996 0.91603 1.43345 1.35694 1.01624 1.49742 1.20781 0.88985 0.98168 0.87834 1.22570 1.00438 0.94964 1.00686 1.21362 0.98250 0.89237 0.85892 0.88640 1.21820 0.94387 0.99581 0.97374 0.92314 1.21474 0.97510 0.98991 0.96509 1.21936 0.96762 1.00459 0.98030 1.21758 0.85036 1.01652 0.93407 1.48550 1.26017 1.26677 1.31908 1.20058 0.83115 0.81168 0.85066 1.90722 1.27716 1.72660 1.51519 1.21911 1.01464 0.96481 0.99642 1.21890 1.00155 0.89956 0.87005 1.47607 1.10085 1.32000 1.18634 1.23767 1.00503 1.04478 0.91115 1.23644 0.91734 1.02724 1.03154 1.75130 1.19592 1.16733 1.02535 1.78307 1.05637 1.08238 1.14373 1.20268 0.98022 0.86765 0.92160 0.93557 0.96150 0.89097 0.93280 0.91944 0.90087 0.92174 0.91053 0.92037 0.90921 0.90486 0.88181 0.87150 0.86576 0.87173 0.79195 0.79370 0.92630 0.96691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 11.19 55.49 0.62 -24.74 16 2 C 0.00 0.11 4.93 -17.43 -0.09 0.02 16 3 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.25 -6.57 9.56 -15.06 -0.14 -6.72 16 8 H 0.07 1.68 7.87 -52.49 -0.41 1.27 16 9 N -0.58 -13.69 2.59 -174.80 -0.45 -14.14 16 10 C 0.17 3.84 5.30 -3.73 -0.02 3.82 16 11 C -0.15 -2.65 5.02 -26.60 -0.13 -2.78 16 12 C 0.15 2.55 2.64 -67.55 -0.18 2.37 16 13 H 0.10 1.79 7.06 -51.93 -0.37 1.43 16 14 C -0.11 -1.81 2.49 -90.96 -0.23 -2.03 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.11 -1.59 4.86 -26.75 -0.13 -1.72 16 17 C -0.13 -1.51 6.08 -26.60 -0.16 -1.67 16 18 C 0.10 1.13 5.86 -3.72 -0.02 1.11 16 19 N -0.60 -8.01 2.66 -165.13 -0.44 -8.45 16 20 C 0.52 6.64 7.71 -10.99 -0.08 6.56 16 21 O -0.55 -8.80 15.43 5.56 0.09 -8.71 16 22 C -0.15 -1.37 4.18 -27.89 -0.12 -1.49 16 23 C 0.13 1.07 5.75 -4.04 -0.02 1.05 16 24 N -0.29 -2.67 3.44 -61.26 -0.21 -2.89 16 25 C -0.05 -0.34 11.57 -17.04 -0.20 -0.54 16 26 C -0.06 -0.47 12.05 -17.74 -0.21 -0.68 16 27 N -0.27 -3.33 12.41 30.23 0.38 -2.95 16 28 N -0.09 -1.03 12.91 60.35 0.78 -0.25 16 29 C 0.16 3.13 5.75 -5.43 -0.03 3.10 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.11 5.33 -51.93 -0.28 0.84 16 35 H 0.08 1.39 6.16 -51.93 -0.32 1.07 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.80 7.27 -51.93 -0.38 0.43 16 40 H 0.08 0.64 5.96 -51.93 -0.31 0.33 16 41 H 0.10 0.77 7.94 -51.93 -0.41 0.36 16 42 H 0.11 0.96 7.69 -51.93 -0.40 0.56 16 43 H 0.12 0.79 8.02 -51.93 -0.42 0.37 16 44 H 0.11 0.95 8.10 -51.93 -0.42 0.53 16 45 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.06 1.10 7.85 -51.93 -0.41 0.69 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -31.95 371.99 -7.81 -39.76 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.37 Total: 0.44 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.77 Total: 0.40 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.67 Total: -53.41 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.95 -7.81 -39.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021571029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.098 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds