Wall clock time and date at job start Tue Mar 31 2020 18:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00002 * 2 1 4 4 H 1.48504 * 109.46947 * 270.00167 * 3 2 1 5 5 H 1.48494 * 109.47345 * 30.00658 * 3 2 1 6 6 H 1.48501 * 109.47077 * 150.00465 * 3 2 1 7 7 C 1.38808 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 163.00730 * 7 2 1 9 9 N 1.36941 * 120.00211 * 343.01016 * 7 2 1 10 10 C 1.46971 * 120.76680 * 331.84683 * 9 7 2 11 11 C 1.53100 * 108.62086 * 234.30901 * 10 9 7 12 12 C 1.53161 * 109.57818 * 304.65963 * 11 10 9 13 13 H 1.08994 * 110.65977 * 299.02508 * 12 11 10 14 14 C 1.52706 * 109.44501 * 60.38432 * 12 11 10 15 15 H 1.08999 * 109.11916 * 181.42488 * 14 12 11 16 16 C 1.52855 * 109.43890 * 61.92353 * 14 12 11 17 17 C 1.53116 * 109.34808 * 61.89654 * 16 14 12 18 18 C 1.53143 * 109.48192 * 299.35745 * 17 16 14 19 19 N 1.46949 * 109.02196 * 54.07599 * 18 17 16 20 20 C 1.34776 * 120.85199 * 125.94307 * 19 18 17 21 21 O 1.21281 * 119.99983 * 179.97438 * 20 19 18 22 22 C 1.50696 * 119.99855 * 0.02562 * 20 19 18 23 23 C 1.52994 * 109.47258 * 179.97438 * 22 20 19 24 24 N 1.46502 * 109.47394 * 180.02562 * 23 22 20 25 25 C 1.35318 * 125.86824 * 124.71055 * 24 23 22 26 26 C 1.35355 * 106.17109 * 179.90852 * 25 24 23 27 27 N 1.33766 * 106.50012 * 0.34981 * 26 25 24 28 28 N 1.28639 * 108.88687 * 359.77959 * 27 26 25 29 29 C 1.44111 * 121.35092 * 151.66201 * 9 7 2 30 30 H 0.97005 * 120.00125 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.60898 * 114.57584 * 10 9 7 32 32 H 1.08991 * 109.76033 * 354.14002 * 10 9 7 33 33 H 1.08991 * 109.45619 * 184.62348 * 11 10 9 34 34 H 1.09002 * 109.44896 * 64.69001 * 11 10 9 35 35 H 1.09005 * 109.48956 * 301.93412 * 16 14 12 36 36 H 1.08991 * 109.49390 * 181.86387 * 16 14 12 37 37 H 1.09002 * 109.46545 * 179.35888 * 17 16 14 38 38 H 1.08994 * 109.46658 * 59.36006 * 17 16 14 39 39 H 1.09000 * 109.54782 * 294.21034 * 18 17 16 40 40 H 1.09005 * 109.61974 * 173.97626 * 18 17 16 41 41 H 1.09004 * 109.47330 * 59.99922 * 22 20 19 42 42 H 1.09000 * 109.46974 * 299.99972 * 22 20 19 43 43 H 1.09000 * 109.47111 * 299.99895 * 23 22 20 44 44 H 1.08997 * 109.47630 * 59.99957 * 23 22 20 45 45 H 1.08001 * 126.91165 * 0.02562 * 25 24 23 46 46 H 1.08001 * 126.74777 * 180.12765 * 26 25 24 47 47 H 1.08999 * 108.26729 * 6.35850 * 29 9 7 48 48 H 1.09004 * 109.66280 * 246.86253 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2225 -0.2739 9 7 1.3702 -2.3624 0.3455 10 6 0.2265 -2.3437 1.2683 11 6 0.5118 -3.3112 2.4200 12 6 0.8239 -4.7011 1.8574 13 1 -0.0256 -5.0878 1.2945 14 6 2.0538 -4.6202 0.9559 15 1 2.2561 -5.6066 0.5385 16 6 3.2586 -4.1644 1.7789 17 6 3.5429 -5.1946 2.8754 18 6 2.3247 -5.3097 3.7963 19 7 1.1353 -5.5986 2.9833 20 6 0.3522 -6.6609 3.2571 21 8 -0.6261 -6.8846 2.5762 22 6 0.6918 -7.5699 4.4101 23 6 -0.3489 -8.6875 4.5020 24 7 -0.0192 -9.5709 5.6233 25 6 -0.8410 -9.8890 6.6503 26 6 -0.1388 -10.7256 7.4497 27 7 1.0649 -10.8702 6.8843 28 7 1.1038 -10.1733 5.8038 29 6 1.7896 -3.6361 -0.1823 30 1 -0.4850 0.8401 0.0004 31 1 -0.6742 -2.6582 0.7409 32 1 0.0871 -1.3370 1.6621 33 1 -0.3616 -3.3702 3.0694 34 1 1.3662 -2.9513 2.9932 35 1 3.0431 -3.1981 2.2348 36 1 4.1295 -4.0745 1.1297 37 1 4.4088 -4.8772 3.4564 38 1 3.7465 -6.1635 2.4196 39 1 2.1817 -4.3706 4.3310 40 1 2.4819 -6.1166 4.5121 41 1 0.6915 -6.9965 5.3372 42 1 1.6789 -8.0042 4.2518 43 1 -1.3359 -8.2528 4.6605 44 1 -0.3492 -9.2610 3.5751 45 1 -1.8539 -9.5460 6.8006 46 1 -0.4815 -11.1831 8.3660 47 1 2.7060 -3.4845 -0.7528 48 1 1.0144 -4.0353 -0.8363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021571029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:28 Heat of formation + Delta-G solvation = 66.575610 kcal Electronic energy + Delta-G solvation = -29525.912301 eV Core-core repulsion = 25617.782826 eV Total energy + Delta-G solvation = -3908.129475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.16546 -41.75550 -39.74540 -37.24778 -36.24633 -34.54266 -33.75889 -32.55234 -31.93101 -31.41570 -31.25627 -27.47971 -26.90344 -25.73421 -23.96880 -23.63738 -23.53544 -22.90671 -22.27419 -20.34832 -19.41468 -18.90622 -18.52104 -17.64234 -17.47564 -17.04130 -16.83351 -16.47597 -16.12934 -15.79223 -15.56736 -15.30816 -15.14126 -14.92787 -14.80373 -14.35506 -14.24636 -14.02570 -13.83637 -13.60203 -13.43026 -13.04346 -13.00203 -12.81764 -12.62701 -12.43928 -12.39302 -12.24954 -12.04205 -11.88753 -11.83864 -11.75744 -11.45164 -11.38718 -11.15022 -11.06204 -10.80326 -10.55276 -10.30268 -9.58143 -8.68649 -7.88420 -5.34122 0.67944 1.31867 1.47261 1.49009 1.52761 1.58276 1.66488 2.00997 2.51486 3.27954 3.38208 3.42975 3.62349 3.69098 3.77172 3.82678 3.95426 3.95798 4.09703 4.20563 4.26021 4.26506 4.36107 4.39650 4.45865 4.48461 4.56764 4.62861 4.67340 4.81724 4.86292 4.89390 4.90506 4.92017 4.99530 5.09122 5.14221 5.24294 5.31371 5.36454 5.41379 5.55461 5.61861 5.64918 5.65221 5.72586 6.40163 6.43193 7.06939 7.13811 7.55087 7.86757 8.38737 9.18878 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002463 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.347325 B =11364.247629 C =11652.145195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.128 4.128 12 C 0.163 3.837 13 H 0.069 0.931 14 C -0.099 4.099 15 H 0.071 0.929 16 C -0.103 4.103 17 C -0.126 4.126 18 C 0.101 3.899 19 N -0.601 5.601 20 C 0.519 3.481 21 O -0.584 6.584 22 C -0.139 4.139 23 C 0.133 3.867 24 N -0.289 5.289 25 C -0.034 4.034 26 C -0.065 4.065 27 N -0.312 5.312 28 N -0.123 5.123 29 C 0.153 3.847 30 H 0.250 0.750 31 H -0.010 1.010 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.231 0.769 46 H 0.217 0.783 47 H 0.056 0.944 48 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -16.884 15.304 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.050 3.950 11 C -0.168 4.168 12 C 0.060 3.940 13 H 0.087 0.913 14 C -0.120 4.120 15 H 0.089 0.911 16 C -0.140 4.140 17 C -0.164 4.164 18 C -0.021 4.021 19 N -0.332 5.332 20 C 0.308 3.692 21 O -0.465 6.465 22 C -0.180 4.180 23 C 0.012 3.988 24 N -0.083 5.083 25 C -0.185 4.185 26 C -0.222 4.222 27 N -0.177 5.177 28 N -0.102 5.102 29 C 0.025 3.975 30 H 0.059 0.941 31 H 0.008 0.992 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.151 0.849 44 H 0.120 0.880 45 H 0.247 0.753 46 H 0.234 0.766 47 H 0.074 0.926 48 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.176 -17.102 14.360 22.438 hybrid contribution -1.168 1.484 -0.304 1.913 sum 1.008 -15.618 14.056 21.036 Atomic orbital electron populations 1.70192 1.06770 1.25871 1.55394 1.25796 0.95945 1.01544 1.01244 0.85302 0.78200 0.79622 0.77465 1.21434 1.22088 1.19187 1.19443 0.92822 0.85543 1.40792 0.91231 1.43515 1.35604 1.02244 1.50331 1.20540 0.87907 0.97652 0.88900 1.22282 1.00954 0.94849 0.98682 1.20905 0.97355 0.88826 0.86941 0.91320 1.21639 0.95316 0.98795 0.96281 0.91075 1.21397 0.96336 0.98984 0.97315 1.21895 0.97838 0.99565 0.97069 1.22002 0.83484 1.03161 0.93408 1.48483 1.27137 1.26329 1.31231 1.20684 0.82141 0.80945 0.85428 1.90715 1.29329 1.73456 1.52971 1.21807 1.01917 0.95887 0.98342 1.21904 1.00699 0.89547 0.86672 1.47684 1.09935 1.31658 1.19043 1.24445 1.01544 1.03005 0.89552 1.24246 0.90794 1.02956 1.04215 1.75076 1.21692 1.17691 1.03249 1.78262 1.07114 1.09776 1.15055 1.20390 0.97250 0.86255 0.93570 0.94127 0.99214 0.92180 0.92663 0.91111 0.92472 0.92133 0.88637 0.91119 0.90785 0.87020 0.86122 0.86391 0.84901 0.87966 0.75284 0.76591 0.92592 0.98358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 11.19 21.65 0.24 -54.51 16 2 C -0.05 -2.73 4.93 84.86 0.42 -2.31 16 3 Si 0.97 43.76 29.59 68.60 2.03 45.79 16 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.26 -13.55 9.56 84.03 0.80 -12.75 16 8 H 0.07 3.57 7.87 -2.91 -0.02 3.54 16 9 N -0.60 -28.85 2.59 -706.95 -1.83 -30.68 16 10 C 0.18 8.40 5.30 86.32 0.46 8.86 16 11 C -0.13 -4.65 5.02 30.68 0.15 -4.50 16 12 C 0.16 5.34 2.64 44.79 0.12 5.46 16 13 H 0.07 2.65 7.06 -2.39 -0.02 2.63 16 14 C -0.10 -3.20 2.49 -11.02 -0.03 -3.23 16 15 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.10 -2.85 4.86 30.58 0.15 -2.70 16 17 C -0.13 -2.39 6.08 30.68 0.19 -2.21 16 18 C 0.10 1.82 5.86 86.34 0.51 2.33 16 19 N -0.60 -14.77 2.66 -794.74 -2.12 -16.89 16 20 C 0.52 12.20 7.71 87.66 0.68 12.87 16 21 O -0.58 -18.27 15.43 -3.03 -0.05 -18.32 16 22 C -0.14 -2.03 4.18 29.84 0.12 -1.91 16 23 C 0.13 1.83 5.75 86.38 0.50 2.33 16 24 N -0.29 -4.59 3.44 -347.73 -1.20 -5.78 16 25 C -0.03 -0.38 11.57 83.49 0.97 0.59 16 26 C -0.06 -0.92 12.05 83.73 1.01 0.09 16 27 N -0.31 -7.12 12.41 -58.26 -0.72 -7.84 16 28 N -0.12 -2.75 12.91 37.02 0.48 -2.27 16 29 C 0.15 6.27 5.75 86.75 0.50 6.77 16 30 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 31 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 32 H 0.06 3.22 6.05 -2.39 -0.01 3.21 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.48 5.33 -2.39 -0.01 2.46 16 35 H 0.06 1.88 6.16 -2.38 -0.01 1.87 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.37 7.27 -2.39 -0.02 1.35 16 40 H 0.11 1.31 5.96 -2.38 -0.01 1.29 16 41 H 0.12 1.33 7.94 -2.38 -0.02 1.31 16 42 H 0.12 1.64 7.69 -2.39 -0.02 1.62 16 43 H 0.13 1.40 8.02 -2.39 -0.02 1.38 16 44 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 45 H 0.23 0.45 8.06 -2.91 -0.02 0.43 16 46 H 0.22 1.48 8.06 -2.91 -0.02 1.45 16 47 H 0.06 2.25 7.85 -2.39 -0.02 2.23 16 48 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: -1.00 -73.40 371.99 4.33 -69.07 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.96 Total: 11.74 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 6.53 Total: 9.69 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -5.14 Total: -117.98 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.40 4.33 -69.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021571029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.647 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds