Wall clock time and date at job start Tue Mar 31 2020 18:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00229 * 2 1 4 4 H 1.48492 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46856 * 300.00216 * 3 2 1 6 6 H 1.48504 * 109.46821 * 59.99649 * 3 2 1 7 7 C 1.38819 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00151 * 163.14048 * 7 2 1 9 9 N 1.36942 * 119.99403 * 343.13663 * 7 2 1 10 10 C 1.46976 * 120.76916 * 151.94496 * 9 7 2 11 11 C 1.53085 * 108.61528 * 125.70287 * 10 9 7 12 12 C 1.51004 * 109.21660 * 55.42014 * 11 10 9 13 13 H 1.08998 * 110.67836 * 61.18582 * 12 11 10 14 14 C 1.53581 * 110.50769 * 298.89623 * 12 11 10 15 15 H 1.09001 * 109.38693 * 179.55816 * 14 12 11 16 16 C 1.52859 * 109.29666 * 299.12956 * 14 12 11 17 17 C 1.53112 * 109.34639 * 297.86705 * 16 14 12 18 18 C 1.53140 * 109.48007 * 60.65205 * 17 16 14 19 19 N 1.46948 * 109.01834 * 305.91942 * 18 17 16 20 20 C 1.34777 * 120.84355 * 234.00434 * 19 18 17 21 21 O 1.21283 * 120.00279 * 180.02562 * 20 19 18 22 22 C 1.50703 * 119.99847 * 359.97438 * 20 19 18 23 23 C 1.53007 * 109.46959 * 180.02562 * 22 20 19 24 24 N 1.46502 * 109.46969 * 180.02562 * 23 22 20 25 25 C 1.35309 * 125.86594 * 124.71242 * 24 23 22 26 26 C 1.35349 * 106.17309 * 179.90438 * 25 24 23 27 27 N 1.33769 * 106.49681 * 0.35115 * 26 25 24 28 28 N 1.28639 * 108.88535 * 359.77743 * 27 26 25 29 29 C 1.46885 * 120.77835 * 331.96600 * 9 7 2 30 30 H 0.96993 * 119.99870 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.61013 * 245.43850 * 10 9 7 32 32 H 1.08993 * 109.61413 * 5.96035 * 10 9 7 33 33 H 1.09007 * 109.45309 * 175.37860 * 11 10 9 34 34 H 1.08999 * 109.45511 * 295.32794 * 11 10 9 35 35 H 1.09008 * 109.49033 * 177.90708 * 16 14 12 36 36 H 1.08994 * 109.49217 * 57.82924 * 16 14 12 37 37 H 1.08997 * 109.47355 * 300.64228 * 17 16 14 38 38 H 1.09003 * 109.46862 * 180.64920 * 17 16 14 39 39 H 1.08997 * 109.54689 * 186.05692 * 18 17 16 40 40 H 1.09001 * 109.54573 * 65.77530 * 18 17 16 41 41 H 1.08998 * 109.47233 * 60.00844 * 22 20 19 42 42 H 1.09002 * 109.47077 * 300.00244 * 22 20 19 43 43 H 1.09002 * 109.46993 * 299.99766 * 23 22 20 44 44 H 1.08998 * 109.46891 * 60.00105 * 23 22 20 45 45 H 1.08004 * 126.91378 * 0.02562 * 25 24 23 46 46 H 1.08004 * 126.74997 * 180.12848 * 26 25 24 47 47 H 1.08990 * 109.52022 * 113.40335 * 29 9 7 48 48 H 1.09000 * 109.56095 * 353.26488 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0554 -1.2224 -0.2707 9 7 1.3697 -2.3624 0.3451 10 6 1.8132 -3.6552 -0.1954 11 6 2.0783 -4.6083 0.9728 12 6 0.8387 -4.7005 1.8302 13 1 0.0015 -5.0962 1.2552 14 6 0.4800 -3.3231 2.4072 15 1 -0.4203 -3.4090 3.0156 16 6 1.6322 -2.8253 3.2797 17 6 1.8327 -3.7884 4.4530 18 6 2.1786 -5.1808 3.9175 19 7 1.1446 -5.5957 2.9593 20 6 0.4965 -6.7682 3.1067 21 8 -0.3540 -7.0958 2.3065 22 6 0.8294 -7.6727 4.2652 23 6 -0.0424 -8.9283 4.1989 24 7 0.2808 -9.8074 5.3254 25 6 -0.5985 -10.2843 6.2366 26 6 0.1208 -11.0501 7.0898 27 7 1.3895 -10.9985 6.6691 28 7 1.4509 -10.2541 5.6218 29 6 0.2232 -2.3439 1.2631 30 1 -0.4849 0.8400 -0.0004 31 1 1.0352 -4.0699 -0.8366 32 1 2.7290 -3.5169 -0.7699 33 1 2.3289 -5.5961 0.5858 34 1 2.9093 -4.2303 1.5683 35 1 1.3967 -1.8316 3.6610 36 1 2.5450 -2.7805 2.6859 37 1 0.9158 -3.8422 5.0398 38 1 2.6465 -3.4290 5.0830 39 1 2.2159 -5.8905 4.7439 40 1 3.1469 -5.1492 3.4180 41 1 0.6406 -7.1481 5.2018 42 1 1.8804 -7.9574 4.2136 43 1 -1.0935 -8.6440 4.2503 44 1 0.1467 -9.4529 3.2623 45 1 -1.6610 -10.0940 6.2741 46 1 -0.2551 -11.5929 7.9446 47 1 -0.6780 -2.6395 0.7262 48 1 0.0942 -1.3393 1.6657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021571031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:33 Heat of formation + Delta-G solvation = 88.100005 kcal Electronic energy + Delta-G solvation = -29572.932779 eV Core-core repulsion = 25665.736672 eV Total energy + Delta-G solvation = -3907.196107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.51220 -40.59572 -38.41026 -35.66793 -35.50908 -32.81339 -32.72034 -31.41895 -31.20129 -30.26646 -29.48435 -26.12083 -25.65332 -24.48267 -22.97059 -22.54131 -22.12434 -21.71097 -21.25765 -19.19926 -18.16416 -17.92390 -16.94005 -16.79766 -16.53536 -15.92963 -15.59198 -15.19391 -15.14731 -14.62706 -14.45154 -14.01694 -13.89352 -13.61489 -13.43626 -13.18059 -13.05479 -12.71167 -12.58364 -12.34379 -12.28910 -12.12094 -11.75547 -11.62283 -11.19687 -11.16947 -11.02927 -10.80871 -10.67087 -10.54252 -10.44685 -10.19410 -10.10467 -10.05573 -9.86320 -9.69706 -9.67015 -9.45752 -8.57264 -8.37879 -6.72673 -5.84245 -3.26669 1.30593 1.97092 2.31111 2.52653 3.01979 3.32789 3.41462 3.42927 4.02029 4.20428 4.27688 4.41652 4.44626 4.71259 4.78187 4.90416 4.92428 5.04244 5.09394 5.12743 5.26612 5.32119 5.38331 5.40665 5.48277 5.49186 5.61799 5.68598 5.80404 5.86397 5.99420 6.00891 6.14054 6.24185 6.24757 6.35162 6.39839 6.45030 6.62159 6.71971 6.80507 6.88354 6.96521 7.24834 7.45434 7.58892 7.75105 8.09397 8.22990 8.39087 9.15564 9.78583 10.35852 11.24456 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.002457 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.735715 B =11395.414943 C =11620.166629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.146 3.854 11 C -0.142 4.142 12 C 0.156 3.844 13 H 0.095 0.905 14 C -0.114 4.114 15 H 0.057 0.943 16 C -0.105 4.105 17 C -0.135 4.135 18 C 0.105 3.895 19 N -0.601 5.601 20 C 0.519 3.481 21 O -0.548 6.548 22 C -0.154 4.154 23 C 0.131 3.869 24 N -0.289 5.289 25 C -0.048 4.048 26 C -0.055 4.055 27 N -0.274 5.274 28 N -0.085 5.085 29 C 0.177 3.823 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.191 0.809 46 H 0.189 0.811 47 H 0.020 0.980 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 -15.692 13.089 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.019 3.981 11 C -0.182 4.182 12 C 0.055 3.945 13 H 0.113 0.887 14 C -0.135 4.135 15 H 0.075 0.925 16 C -0.142 4.142 17 C -0.173 4.173 18 C -0.018 4.018 19 N -0.333 5.333 20 C 0.306 3.694 21 O -0.427 6.427 22 C -0.195 4.195 23 C 0.010 3.990 24 N -0.083 5.083 25 C -0.199 4.199 26 C -0.213 4.213 27 N -0.140 5.140 28 N -0.065 5.065 29 C 0.050 3.950 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.208 0.792 46 H 0.206 0.794 47 H 0.038 0.962 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.276 -15.711 12.234 19.914 hybrid contribution -0.871 1.006 0.385 1.385 sum -0.595 -14.704 12.619 19.386 Atomic orbital electron populations 1.70028 1.05250 1.25427 1.53923 1.25041 0.95248 0.98381 1.00867 0.86264 0.79393 0.84078 0.77292 1.20258 1.21746 1.21594 1.19179 0.92487 0.84608 1.41639 0.91631 1.44038 1.35590 1.01486 1.49970 1.20874 0.97949 0.86781 0.92486 1.22031 0.97513 0.99586 0.99076 1.21154 0.98593 0.88961 0.85795 0.88661 1.22108 0.97373 0.95032 0.99012 0.92456 1.21443 1.00162 0.97559 0.95039 1.21966 1.01548 0.94890 0.98899 1.21757 0.91412 0.96796 0.91813 1.48616 1.38078 1.18895 1.27692 1.20065 0.81541 0.81800 0.86041 1.90720 1.33115 1.73762 1.45106 1.21915 1.02950 0.95019 0.99621 1.21893 1.01599 0.89028 0.86487 1.47602 1.06313 1.33002 1.21396 1.23761 0.99256 1.03252 0.93617 1.23644 0.90245 1.04148 1.03218 1.75132 1.19489 1.13950 1.05419 1.78306 1.04834 1.11316 1.12083 1.20702 0.88778 0.97942 0.87560 0.93649 0.96196 0.92449 0.92982 0.91511 0.91977 0.90417 0.92195 0.91163 0.90565 0.90924 0.88178 0.87173 0.86606 0.87159 0.79206 0.79372 0.96219 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 11.19 55.49 0.62 -24.68 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.48 9.60 -15.05 -0.14 -6.62 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -13.79 2.63 -172.64 -0.45 -14.24 16 10 C 0.15 2.93 6.50 -3.74 -0.02 2.90 16 11 C -0.14 -2.35 4.92 -27.69 -0.14 -2.49 16 12 C 0.16 2.57 2.57 -68.19 -0.18 2.40 16 13 H 0.10 1.78 7.06 -51.93 -0.37 1.41 16 14 C -0.11 -2.01 2.52 -90.51 -0.23 -2.24 16 15 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.10 -1.66 4.86 -26.75 -0.13 -1.79 16 17 C -0.13 -1.59 6.08 -26.60 -0.16 -1.75 16 18 C 0.11 1.14 5.84 -3.73 -0.02 1.12 16 19 N -0.60 -8.00 2.62 -165.86 -0.43 -8.43 16 20 C 0.52 6.61 7.71 -10.98 -0.08 6.53 16 21 O -0.55 -8.76 15.43 5.55 0.09 -8.68 16 22 C -0.15 -1.37 4.18 -27.88 -0.12 -1.49 16 23 C 0.13 1.07 5.75 -4.04 -0.02 1.05 16 24 N -0.29 -2.67 3.44 -61.26 -0.21 -2.88 16 25 C -0.05 -0.34 11.57 -17.05 -0.20 -0.54 16 26 C -0.06 -0.46 12.05 -17.74 -0.21 -0.68 16 27 N -0.27 -3.33 12.41 30.23 0.38 -2.96 16 28 N -0.09 -1.03 12.91 60.35 0.78 -0.25 16 29 C 0.18 3.97 4.68 -3.95 -0.02 3.95 16 30 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.09 5.25 -51.93 -0.27 0.82 16 35 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 36 H 0.08 1.37 6.17 -51.93 -0.32 1.05 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.64 5.96 -51.93 -0.31 0.33 16 40 H 0.07 0.79 7.18 -51.93 -0.37 0.42 16 41 H 0.10 0.78 7.71 -51.93 -0.40 0.38 16 42 H 0.11 0.96 7.92 -51.93 -0.41 0.55 16 43 H 0.12 0.78 8.02 -51.93 -0.42 0.37 16 44 H 0.11 0.95 8.10 -51.93 -0.42 0.53 16 45 H 0.19 0.64 8.06 -52.48 -0.42 0.21 16 46 H 0.19 0.93 8.06 -52.48 -0.42 0.50 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -31.91 371.98 -7.79 -39.70 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.37 Total: 0.53 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.76 Total: 0.34 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.68 Total: -53.44 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.91 -7.79 -39.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021571031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.805 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds