Wall clock time and date at job start Tue Mar 31 2020 18:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00229 * 2 1 4 4 H 1.48492 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46856 * 300.00216 * 3 2 1 6 6 H 1.48504 * 109.46821 * 59.99649 * 3 2 1 7 7 C 1.38819 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00151 * 163.14048 * 7 2 1 9 9 N 1.36942 * 119.99403 * 343.13663 * 7 2 1 10 10 C 1.46976 * 120.76916 * 151.94496 * 9 7 2 11 11 C 1.53085 * 108.61528 * 125.70287 * 10 9 7 12 12 C 1.51004 * 109.21660 * 55.42014 * 11 10 9 13 13 H 1.08998 * 110.67836 * 61.18582 * 12 11 10 14 14 C 1.53581 * 110.50769 * 298.89623 * 12 11 10 15 15 H 1.09001 * 109.38693 * 179.55816 * 14 12 11 16 16 C 1.52859 * 109.29666 * 299.12956 * 14 12 11 17 17 C 1.53112 * 109.34639 * 297.86705 * 16 14 12 18 18 C 1.53140 * 109.48007 * 60.65205 * 17 16 14 19 19 N 1.46948 * 109.01834 * 305.91942 * 18 17 16 20 20 C 1.34777 * 120.84355 * 234.00434 * 19 18 17 21 21 O 1.21283 * 120.00279 * 180.02562 * 20 19 18 22 22 C 1.50703 * 119.99847 * 359.97438 * 20 19 18 23 23 C 1.53007 * 109.46959 * 180.02562 * 22 20 19 24 24 N 1.46502 * 109.46969 * 180.02562 * 23 22 20 25 25 C 1.35309 * 125.86594 * 124.71242 * 24 23 22 26 26 C 1.35349 * 106.17309 * 179.90438 * 25 24 23 27 27 N 1.33769 * 106.49681 * 0.35115 * 26 25 24 28 28 N 1.28639 * 108.88535 * 359.77743 * 27 26 25 29 29 C 1.46885 * 120.77835 * 331.96600 * 9 7 2 30 30 H 0.96993 * 119.99870 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.61013 * 245.43850 * 10 9 7 32 32 H 1.08993 * 109.61413 * 5.96035 * 10 9 7 33 33 H 1.09007 * 109.45309 * 175.37860 * 11 10 9 34 34 H 1.08999 * 109.45511 * 295.32794 * 11 10 9 35 35 H 1.09008 * 109.49033 * 177.90708 * 16 14 12 36 36 H 1.08994 * 109.49217 * 57.82924 * 16 14 12 37 37 H 1.08997 * 109.47355 * 300.64228 * 17 16 14 38 38 H 1.09003 * 109.46862 * 180.64920 * 17 16 14 39 39 H 1.08997 * 109.54689 * 186.05692 * 18 17 16 40 40 H 1.09001 * 109.54573 * 65.77530 * 18 17 16 41 41 H 1.08998 * 109.47233 * 60.00844 * 22 20 19 42 42 H 1.09002 * 109.47077 * 300.00244 * 22 20 19 43 43 H 1.09002 * 109.46993 * 299.99766 * 23 22 20 44 44 H 1.08998 * 109.46891 * 60.00105 * 23 22 20 45 45 H 1.08004 * 126.91378 * 0.02562 * 25 24 23 46 46 H 1.08004 * 126.74997 * 180.12848 * 26 25 24 47 47 H 1.08990 * 109.52022 * 113.40335 * 29 9 7 48 48 H 1.09000 * 109.56095 * 353.26488 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0554 -1.2224 -0.2707 9 7 1.3697 -2.3624 0.3451 10 6 1.8132 -3.6552 -0.1954 11 6 2.0783 -4.6083 0.9728 12 6 0.8387 -4.7005 1.8302 13 1 0.0015 -5.0962 1.2552 14 6 0.4800 -3.3231 2.4072 15 1 -0.4203 -3.4090 3.0156 16 6 1.6322 -2.8253 3.2797 17 6 1.8327 -3.7884 4.4530 18 6 2.1786 -5.1808 3.9175 19 7 1.1446 -5.5957 2.9593 20 6 0.4965 -6.7682 3.1067 21 8 -0.3540 -7.0958 2.3065 22 6 0.8294 -7.6727 4.2652 23 6 -0.0424 -8.9283 4.1989 24 7 0.2808 -9.8074 5.3254 25 6 -0.5985 -10.2843 6.2366 26 6 0.1208 -11.0501 7.0898 27 7 1.3895 -10.9985 6.6691 28 7 1.4509 -10.2541 5.6218 29 6 0.2232 -2.3439 1.2631 30 1 -0.4849 0.8400 -0.0004 31 1 1.0352 -4.0699 -0.8366 32 1 2.7290 -3.5169 -0.7699 33 1 2.3289 -5.5961 0.5858 34 1 2.9093 -4.2303 1.5683 35 1 1.3967 -1.8316 3.6610 36 1 2.5450 -2.7805 2.6859 37 1 0.9158 -3.8422 5.0398 38 1 2.6465 -3.4290 5.0830 39 1 2.2159 -5.8905 4.7439 40 1 3.1469 -5.1492 3.4180 41 1 0.6406 -7.1481 5.2018 42 1 1.8804 -7.9574 4.2136 43 1 -1.0935 -8.6440 4.2503 44 1 0.1467 -9.4529 3.2623 45 1 -1.6610 -10.0940 6.2741 46 1 -0.2551 -11.5929 7.9446 47 1 -0.6780 -2.6395 0.7262 48 1 0.0942 -1.3393 1.6657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021571031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:32 Heat of formation + Delta-G solvation = 68.319391 kcal Electronic energy + Delta-G solvation = -29573.790530 eV Core-core repulsion = 25665.736672 eV Total energy + Delta-G solvation = -3908.053859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.16451 -41.76342 -39.68055 -37.12819 -36.24182 -34.42404 -34.02223 -32.41678 -31.92639 -31.58843 -31.01499 -27.46960 -26.88896 -25.76315 -23.96399 -23.57193 -23.52212 -22.87330 -22.27454 -20.36116 -19.42117 -18.89947 -18.49702 -17.62532 -17.42513 -16.97465 -16.92982 -16.55336 -16.03998 -15.78705 -15.56992 -15.29215 -15.09901 -14.94899 -14.61085 -14.40386 -14.29057 -13.97035 -13.82787 -13.59773 -13.45166 -13.16602 -12.93643 -12.81384 -12.62379 -12.50099 -12.42535 -12.19487 -11.98975 -11.86266 -11.83034 -11.77051 -11.46452 -11.35706 -11.14536 -11.07337 -10.78722 -10.53672 -10.30029 -9.58563 -8.68376 -7.86976 -5.32144 0.68343 1.32481 1.45951 1.48703 1.53861 1.58421 1.66754 2.01836 2.51246 3.29057 3.38766 3.43035 3.63005 3.64514 3.76637 3.83964 3.97325 3.97857 4.09235 4.21282 4.24509 4.27049 4.36411 4.37510 4.46912 4.48392 4.57532 4.63924 4.65978 4.72349 4.86219 4.89359 4.94404 4.99087 5.05315 5.12106 5.15007 5.22135 5.31524 5.31847 5.43889 5.56857 5.60707 5.65457 5.67922 5.71317 6.39016 6.43954 7.07779 7.14772 7.55442 7.84711 8.38169 9.19998 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.002457 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.735715 B =11395.414943 C =11620.166629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.291 1.291 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.601 5.601 10 C 0.142 3.858 11 C -0.125 4.125 12 C 0.165 3.835 13 H 0.069 0.931 14 C -0.103 4.103 15 H 0.059 0.941 16 C -0.099 4.099 17 C -0.125 4.125 18 C 0.103 3.897 19 N -0.602 5.602 20 C 0.519 3.481 21 O -0.584 6.584 22 C -0.140 4.140 23 C 0.133 3.867 24 N -0.289 5.289 25 C -0.034 4.034 26 C -0.065 4.065 27 N -0.312 5.312 28 N -0.123 5.123 29 C 0.186 3.814 30 H 0.249 0.751 31 H 0.007 0.993 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.231 0.769 46 H 0.217 0.783 47 H -0.015 1.015 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -17.148 15.532 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.325 5.325 10 C 0.015 3.985 11 C -0.165 4.165 12 C 0.062 3.938 13 H 0.087 0.913 14 C -0.124 4.124 15 H 0.077 0.923 16 C -0.137 4.137 17 C -0.163 4.163 18 C -0.018 4.018 19 N -0.333 5.333 20 C 0.308 3.692 21 O -0.465 6.465 22 C -0.180 4.180 23 C 0.012 3.988 24 N -0.083 5.083 25 C -0.185 4.185 26 C -0.222 4.222 27 N -0.177 5.177 28 N -0.102 5.102 29 C 0.060 3.940 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.151 0.849 44 H 0.120 0.880 45 H 0.247 0.753 46 H 0.234 0.766 47 H 0.003 0.997 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.260 -17.200 14.695 22.658 hybrid contribution -1.249 1.404 -0.423 1.926 sum 0.011 -15.796 14.272 21.289 Atomic orbital electron populations 1.70190 1.06721 1.25675 1.55741 1.25763 0.95916 1.01388 1.01439 0.85268 0.78802 0.80147 0.76609 1.18883 1.22388 1.21731 1.19486 0.92715 0.85600 1.40398 0.91345 1.44235 1.35499 1.02139 1.50583 1.21001 0.97462 0.86065 0.93929 1.21823 0.97765 0.99249 0.97655 1.20701 0.97599 0.88687 0.86839 0.91323 1.21867 0.98539 0.94643 0.97340 0.92308 1.21343 0.98129 0.98068 0.96116 1.21906 1.03002 0.94223 0.97194 1.21992 0.90598 0.96963 0.92280 1.48547 1.38865 1.18714 1.27199 1.20680 0.80475 0.81590 0.86454 1.90714 1.34670 1.74447 1.46663 1.21814 1.03434 0.94444 0.98294 1.21910 1.02361 0.88501 0.86057 1.47682 1.06195 1.32780 1.21641 1.24440 1.00633 1.01493 0.91981 1.24246 0.89252 1.04471 1.04253 1.75078 1.21685 1.14855 1.06114 1.78261 1.06233 1.12837 1.12888 1.20450 0.87466 0.97501 0.88630 0.94220 0.97482 0.92081 0.91330 0.90547 0.93619 0.92003 0.91435 0.88630 0.86957 0.90334 0.86087 0.86441 0.84906 0.87958 0.75278 0.76601 0.99707 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.83 11.19 21.65 0.24 -54.58 16 2 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 3 Si 0.96 43.91 29.59 68.60 2.03 45.94 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 7 C -0.25 -13.33 9.60 84.03 0.81 -12.52 16 8 H 0.07 3.53 7.88 -2.92 -0.02 3.50 16 9 N -0.60 -29.09 2.63 -700.11 -1.84 -30.93 16 10 C 0.14 5.76 6.50 86.32 0.56 6.32 16 11 C -0.13 -4.04 4.92 29.97 0.15 -3.89 16 12 C 0.16 5.36 2.57 44.38 0.11 5.47 16 13 H 0.07 2.63 7.06 -2.39 -0.02 2.61 16 14 C -0.10 -3.68 2.52 -10.72 -0.03 -3.71 16 15 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.10 -3.05 4.86 30.58 0.15 -2.90 16 17 C -0.13 -2.54 6.08 30.68 0.19 -2.35 16 18 C 0.10 1.84 5.84 86.34 0.50 2.35 16 19 N -0.60 -14.63 2.62 -797.04 -2.09 -16.72 16 20 C 0.52 12.03 7.71 87.66 0.68 12.71 16 21 O -0.58 -18.05 15.43 -3.04 -0.05 -18.09 16 22 C -0.14 -2.00 4.18 29.85 0.12 -1.88 16 23 C 0.13 1.80 5.75 86.38 0.50 2.30 16 24 N -0.29 -4.54 3.44 -347.72 -1.20 -5.74 16 25 C -0.03 -0.37 11.57 83.49 0.97 0.59 16 26 C -0.06 -0.92 12.05 83.73 1.01 0.09 16 27 N -0.31 -7.11 12.41 -58.26 -0.72 -7.83 16 28 N -0.12 -2.74 12.91 37.02 0.48 -2.27 16 29 C 0.19 8.80 4.68 86.23 0.40 9.20 16 30 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.06 2.40 7.94 -2.39 -0.02 2.38 16 33 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.08 2.35 5.25 -2.39 -0.01 2.34 16 35 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.06 2.11 6.17 -2.39 -0.01 2.09 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.28 5.96 -2.39 -0.01 1.27 16 40 H 0.08 1.38 7.18 -2.39 -0.02 1.36 16 41 H 0.12 1.30 7.71 -2.39 -0.02 1.29 16 42 H 0.12 1.61 7.92 -2.39 -0.02 1.60 16 43 H 0.13 1.36 8.02 -2.39 -0.02 1.34 16 44 H 0.10 1.58 8.10 -2.39 -0.02 1.56 16 45 H 0.23 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.22 1.46 8.06 -2.91 -0.02 1.44 16 47 H -0.02 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 Total: -1.00 -73.73 371.98 4.35 -69.38 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.96 Total: 11.38 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.54 Total: 9.47 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -5.12 Total: -118.07 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -73.73 4.35 -69.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021571031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.699 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds