Wall clock time and date at job start Tue Mar 31 2020 18:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47058 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47125 * 119.99599 * 3 2 1 6 6 H 1.48492 * 109.47338 * 239.99780 * 3 2 1 7 7 C 1.38808 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 155.48727 * 7 2 1 9 9 N 1.36937 * 120.00224 * 335.49131 * 7 2 1 10 10 C 1.46862 * 120.46862 * 331.87100 * 9 7 2 11 11 C 1.52892 * 109.33375 * 232.61376 * 10 9 7 12 12 C 1.52900 * 109.01787 * 306.12490 * 11 10 9 13 13 H 1.08992 * 109.69995 * 301.96536 * 12 11 10 14 14 C 1.53270 * 109.16243 * 61.99011 * 12 11 10 15 15 H 1.09006 * 109.47206 * 56.45631 * 14 12 11 16 16 C 1.52818 * 109.16654 * 176.27744 * 14 12 11 17 17 C 1.53143 * 109.26680 * 298.18655 * 16 14 12 18 18 C 1.53125 * 109.61847 * 60.84930 * 17 16 14 19 19 N 1.46709 * 110.29629 * 181.23126 * 12 11 10 20 20 C 1.34784 * 120.84258 * 6.02174 * 19 12 11 21 21 O 1.21278 * 120.00272 * 354.58344 * 20 19 12 22 22 C 1.50701 * 119.99775 * 174.58266 * 20 19 12 23 23 C 1.52994 * 109.47164 * 180.02562 * 22 20 19 24 24 C 1.50702 * 109.47512 * 179.97438 * 23 22 20 25 25 C 1.35349 * 126.91133 * 274.69064 * 24 23 22 26 26 N 1.33772 * 106.49383 * 179.90366 * 25 24 23 27 27 N 1.28631 * 108.88611 * 0.36020 * 26 25 24 28 28 N 1.28709 * 110.17891 * 359.77347 * 27 26 25 29 29 H 0.97006 * 125.87189 * 180.02562 * 28 27 26 30 30 C 1.47073 * 120.46969 * 152.14613 * 9 7 2 31 31 H 0.97002 * 120.00210 * 174.23223 * 1 2 3 32 32 H 1.08995 * 109.53235 * 352.55685 * 10 9 7 33 33 H 1.09001 * 109.53021 * 112.78445 * 10 9 7 34 34 H 1.09004 * 109.62790 * 186.20483 * 11 10 9 35 35 H 1.08999 * 109.50863 * 65.97285 * 11 10 9 36 36 H 1.08996 * 109.50608 * 58.12874 * 16 14 12 37 37 H 1.09006 * 109.50136 * 178.25247 * 16 14 12 38 38 H 1.09001 * 109.44804 * 300.80832 * 17 16 14 39 39 H 1.08994 * 109.42403 * 180.88301 * 17 16 14 40 40 H 1.09003 * 109.54858 * 186.13085 * 18 17 16 41 41 H 1.09001 * 109.61406 * 65.91108 * 18 17 16 42 42 H 1.08996 * 109.47207 * 300.00533 * 22 20 19 43 43 H 1.09002 * 109.47150 * 60.00242 * 22 20 19 44 44 H 1.08996 * 109.47449 * 300.00330 * 23 22 20 45 45 H 1.09002 * 109.46934 * 60.00054 * 23 22 20 46 46 H 1.07997 * 126.75613 * 0.03122 * 25 24 23 47 47 H 1.09002 * 109.68834 * 246.37472 * 30 9 7 48 48 H 1.08994 * 109.69281 * 6.95419 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1038 1.6964 1.2126 6 1 3.1039 1.6964 -1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0172 -1.2445 -0.3875 9 7 1.4181 -2.3344 0.4930 10 6 0.3873 -2.2428 1.5350 11 6 0.7644 -3.1561 2.7018 12 6 1.0115 -4.5680 2.1696 13 1 0.1192 -4.9296 1.6589 14 6 2.1872 -4.5365 1.1867 15 1 3.0636 -4.1179 1.6817 16 6 2.4941 -5.9609 0.7258 17 6 2.9033 -6.8063 1.9354 18 6 1.7524 -6.8512 2.9444 19 7 1.3475 -5.4758 3.2720 20 6 1.2872 -5.0597 4.5526 21 8 1.0479 -3.8972 4.8019 22 6 1.5171 -6.0391 5.6747 23 6 1.3927 -5.3153 7.0168 24 6 1.6219 -6.2948 8.1390 25 6 0.7027 -7.1098 8.7071 26 7 1.3436 -7.8025 9.6552 27 7 2.5761 -7.4350 9.6781 28 7 2.7868 -6.5322 8.7852 29 1 3.6351 -6.0971 8.6059 30 6 1.8097 -3.6598 -0.0099 31 1 -0.4850 -0.8358 -0.0844 32 1 0.3159 -1.2139 1.8876 33 1 -0.5732 -2.5565 1.1261 34 1 -0.0483 -3.1769 3.4279 35 1 1.6704 -2.7821 3.1786 36 1 1.6067 -6.3928 0.2633 37 1 3.3095 -5.9416 0.0026 38 1 3.7816 -6.3647 2.4063 39 1 3.1380 -7.8188 1.6072 40 1 2.0813 -7.3601 3.8504 41 1 0.9072 -7.3867 2.5118 42 1 0.7737 -6.8344 5.6208 43 1 2.5151 -6.4679 5.5839 44 1 2.1358 -4.5198 7.0710 45 1 0.3945 -4.8868 7.1074 46 1 -0.3421 -7.1873 8.4450 47 1 0.9747 -4.1105 -0.5464 48 1 2.6656 -3.5612 -0.6775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021673907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:04 Heat of formation + Delta-G solvation = 82.662649 kcal Electronic energy + Delta-G solvation = -29580.728984 eV Core-core repulsion = 25673.297096 eV Total energy + Delta-G solvation = -3907.431888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.63811 -40.67099 -38.08480 -36.11661 -34.83020 -33.52492 -33.19951 -32.62234 -30.65250 -29.61904 -29.51956 -25.96621 -25.42390 -24.21974 -23.29278 -22.72673 -22.42256 -21.81158 -20.46345 -19.48502 -18.95544 -18.56115 -17.32865 -16.75703 -16.39480 -15.99175 -15.85828 -14.86934 -14.65703 -14.52151 -14.41241 -14.11979 -13.98980 -13.69302 -13.49497 -13.38493 -12.92399 -12.74667 -12.48596 -12.40429 -12.28139 -12.06589 -11.69799 -11.58280 -11.23761 -11.14500 -11.07607 -10.92207 -10.90006 -10.76985 -10.57821 -10.39341 -10.17495 -10.01363 -9.81636 -9.54966 -9.29548 -8.88822 -8.40379 -8.31199 -6.84563 -6.03596 -3.20703 1.18584 2.20995 2.37859 2.62166 2.98173 3.50267 3.54991 3.72322 4.01076 4.29032 4.50044 4.52229 4.59789 4.64985 4.71635 4.80461 4.89568 4.93510 5.06753 5.11103 5.14176 5.25004 5.38128 5.39481 5.48355 5.58022 5.58431 5.61341 5.74046 5.76067 5.79921 5.89813 5.99470 6.10505 6.22584 6.24427 6.33612 6.46252 6.49369 6.59964 6.74104 6.83500 6.94826 7.22562 7.28663 7.50776 8.01999 8.10165 8.24264 8.60641 9.14530 9.87410 10.31105 11.24498 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.002845 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.050310 B = 9838.250971 C =10919.245237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.023 4.023 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.350 4.350 8 H 0.054 0.946 9 N -0.599 5.599 10 C 0.144 3.856 11 C -0.116 4.116 12 C 0.158 3.842 13 H 0.064 0.936 14 C -0.113 4.113 15 H 0.070 0.930 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.107 3.893 19 N -0.608 5.608 20 C 0.510 3.490 21 O -0.523 6.523 22 C -0.138 4.138 23 C -0.034 4.034 24 C -0.004 4.004 25 C -0.047 4.047 26 N -0.267 5.267 27 N -0.085 5.085 28 N -0.390 5.390 29 H 0.448 0.552 30 C 0.157 3.843 31 H 0.269 0.731 32 H 0.080 0.920 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.191 0.809 47 H 0.016 0.984 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 -17.238 10.654 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.225 4.225 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.479 4.479 8 H 0.072 0.928 9 N -0.323 5.323 10 C 0.018 3.982 11 C -0.155 4.155 12 C 0.056 3.944 13 H 0.082 0.918 14 C -0.134 4.134 15 H 0.088 0.912 16 C -0.152 4.152 17 C -0.171 4.171 18 C -0.016 4.016 19 N -0.341 5.341 20 C 0.298 3.702 21 O -0.399 6.399 22 C -0.178 4.178 23 C -0.074 4.074 24 C -0.138 4.138 25 C -0.204 4.204 26 N -0.134 5.134 27 N -0.065 5.065 28 N -0.111 5.111 29 H 0.293 0.707 30 C 0.030 3.970 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.208 0.792 47 H 0.034 0.966 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.414 -15.863 12.020 20.386 hybrid contribution 0.418 -1.015 -1.205 1.630 sum 4.832 -16.878 10.815 20.620 Atomic orbital electron populations 1.70774 1.06593 1.30349 1.47834 1.25823 0.96543 1.01412 0.98752 0.83547 0.74817 0.76168 0.76121 1.21071 1.22093 1.22049 1.19944 0.97146 0.88462 1.42371 0.92837 1.44159 1.45916 1.01157 1.41067 1.21085 0.90111 0.99506 0.87505 1.22433 1.02944 0.92160 0.97957 1.21312 0.96495 0.90652 0.85931 0.91805 1.22066 0.98268 0.94763 0.98345 0.91150 1.21520 1.01379 0.95443 0.96880 1.21892 0.98004 1.00477 0.96720 1.21722 0.97631 0.83005 0.99233 1.48287 1.67142 1.12707 1.06007 1.20413 0.77443 0.88971 0.83405 1.90828 1.47775 1.17789 1.83527 1.21742 1.04140 0.99041 0.92917 1.19909 1.05879 0.94131 0.87499 1.22386 0.86630 1.03744 1.00995 1.23464 1.01698 0.97899 0.97366 1.75109 0.98317 1.21586 1.18360 1.78299 1.13079 1.04814 1.10315 1.45170 1.12033 1.29013 1.24846 0.70653 1.20857 0.97541 0.86211 0.92347 0.92009 0.90130 0.97031 0.90889 0.91316 0.91974 0.91684 0.91720 0.91010 0.90286 0.91391 0.88437 0.89294 0.89329 0.87593 0.79152 0.96590 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.63 12.43 55.49 0.69 -26.94 16 2 C -0.02 -0.66 4.68 -17.43 -0.08 -0.74 16 3 Si 1.06 25.50 29.98 -169.99 -5.10 20.41 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.35 -9.80 9.48 -15.06 -0.14 -9.94 16 8 H 0.05 1.50 7.94 -52.49 -0.42 1.09 16 9 N -0.60 -14.97 2.86 -172.52 -0.49 -15.46 16 10 C 0.14 3.44 4.65 -3.90 -0.02 3.43 16 11 C -0.12 -2.31 3.78 -26.84 -0.10 -2.41 16 12 C 0.16 2.57 2.64 -67.73 -0.18 2.39 16 13 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 14 C -0.11 -1.85 2.21 -90.54 -0.20 -2.05 16 15 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.11 -1.37 5.24 -26.75 -0.14 -1.51 16 17 C -0.13 -1.23 6.07 -26.59 -0.16 -1.39 16 18 C 0.11 0.95 6.33 -3.67 -0.02 0.93 16 19 N -0.61 -7.66 2.97 -165.32 -0.49 -8.15 16 20 C 0.51 6.36 7.62 -10.98 -0.08 6.27 16 21 O -0.52 -8.57 11.53 5.56 0.06 -8.51 16 22 C -0.14 -1.04 4.10 -27.89 -0.11 -1.16 16 23 C -0.03 -0.25 5.07 -27.89 -0.14 -0.39 16 24 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 25 C -0.05 -0.41 11.99 -17.74 -0.21 -0.62 16 26 N -0.27 -3.08 12.41 30.23 0.38 -2.71 16 27 N -0.08 -0.91 13.38 60.35 0.81 -0.10 16 28 N -0.39 -2.91 6.98 33.54 0.23 -2.68 16 29 H 0.45 1.85 8.96 -190.40 -1.71 0.15 16 30 C 0.16 3.20 5.86 -3.70 -0.02 3.18 16 31 H 0.27 8.16 6.65 -40.82 -0.27 7.89 16 32 H 0.08 2.20 6.34 -51.93 -0.33 1.87 16 33 H 0.01 0.28 7.81 -51.93 -0.41 -0.12 16 34 H 0.07 1.46 6.46 -51.93 -0.34 1.12 16 35 H 0.07 1.53 7.14 -51.93 -0.37 1.16 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.50 6.00 -51.93 -0.31 0.19 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 43 H 0.09 0.55 7.47 -51.93 -0.39 0.16 16 44 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 45 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 46 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -34.82 370.35 -9.30 -44.13 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.81 Total: -0.96 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.16 Total: -4.60 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 1.12 Total: -56.04 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.06 Total: -8.51 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.10 Total: 20.41 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.82 -9.30 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021673907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.788 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds