Wall clock time and date at job start Tue Mar 31 2020 18:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47058 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47125 * 119.99599 * 3 2 1 6 6 H 1.48492 * 109.47338 * 239.99780 * 3 2 1 7 7 C 1.38808 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 155.48727 * 7 2 1 9 9 N 1.36937 * 120.00224 * 335.49131 * 7 2 1 10 10 C 1.46862 * 120.46862 * 331.87100 * 9 7 2 11 11 C 1.52892 * 109.33375 * 232.61376 * 10 9 7 12 12 C 1.52900 * 109.01787 * 306.12490 * 11 10 9 13 13 H 1.08992 * 109.69995 * 301.96536 * 12 11 10 14 14 C 1.53270 * 109.16243 * 61.99011 * 12 11 10 15 15 H 1.09006 * 109.47206 * 56.45631 * 14 12 11 16 16 C 1.52818 * 109.16654 * 176.27744 * 14 12 11 17 17 C 1.53143 * 109.26680 * 298.18655 * 16 14 12 18 18 C 1.53125 * 109.61847 * 60.84930 * 17 16 14 19 19 N 1.46709 * 110.29629 * 181.23126 * 12 11 10 20 20 C 1.34784 * 120.84258 * 6.02174 * 19 12 11 21 21 O 1.21278 * 120.00272 * 354.58344 * 20 19 12 22 22 C 1.50701 * 119.99775 * 174.58266 * 20 19 12 23 23 C 1.52994 * 109.47164 * 180.02562 * 22 20 19 24 24 C 1.50702 * 109.47512 * 179.97438 * 23 22 20 25 25 C 1.35349 * 126.91133 * 274.69064 * 24 23 22 26 26 N 1.33772 * 106.49383 * 179.90366 * 25 24 23 27 27 N 1.28631 * 108.88611 * 0.36020 * 26 25 24 28 28 N 1.28709 * 110.17891 * 359.77347 * 27 26 25 29 29 H 0.97006 * 125.87189 * 180.02562 * 28 27 26 30 30 C 1.47073 * 120.46969 * 152.14613 * 9 7 2 31 31 H 0.97002 * 120.00210 * 174.23223 * 1 2 3 32 32 H 1.08995 * 109.53235 * 352.55685 * 10 9 7 33 33 H 1.09001 * 109.53021 * 112.78445 * 10 9 7 34 34 H 1.09004 * 109.62790 * 186.20483 * 11 10 9 35 35 H 1.08999 * 109.50863 * 65.97285 * 11 10 9 36 36 H 1.08996 * 109.50608 * 58.12874 * 16 14 12 37 37 H 1.09006 * 109.50136 * 178.25247 * 16 14 12 38 38 H 1.09001 * 109.44804 * 300.80832 * 17 16 14 39 39 H 1.08994 * 109.42403 * 180.88301 * 17 16 14 40 40 H 1.09003 * 109.54858 * 186.13085 * 18 17 16 41 41 H 1.09001 * 109.61406 * 65.91108 * 18 17 16 42 42 H 1.08996 * 109.47207 * 300.00533 * 22 20 19 43 43 H 1.09002 * 109.47150 * 60.00242 * 22 20 19 44 44 H 1.08996 * 109.47449 * 300.00330 * 23 22 20 45 45 H 1.09002 * 109.46934 * 60.00054 * 23 22 20 46 46 H 1.07997 * 126.75613 * 0.03122 * 25 24 23 47 47 H 1.09002 * 109.68834 * 246.37472 * 30 9 7 48 48 H 1.08994 * 109.69281 * 6.95419 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1038 1.6964 1.2126 6 1 3.1039 1.6964 -1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0172 -1.2445 -0.3875 9 7 1.4181 -2.3344 0.4930 10 6 0.3873 -2.2428 1.5350 11 6 0.7644 -3.1561 2.7018 12 6 1.0115 -4.5680 2.1696 13 1 0.1192 -4.9296 1.6589 14 6 2.1872 -4.5365 1.1867 15 1 3.0636 -4.1179 1.6817 16 6 2.4941 -5.9609 0.7258 17 6 2.9033 -6.8063 1.9354 18 6 1.7524 -6.8512 2.9444 19 7 1.3475 -5.4758 3.2720 20 6 1.2872 -5.0597 4.5526 21 8 1.0479 -3.8972 4.8019 22 6 1.5171 -6.0391 5.6747 23 6 1.3927 -5.3153 7.0168 24 6 1.6219 -6.2948 8.1390 25 6 0.7027 -7.1098 8.7071 26 7 1.3436 -7.8025 9.6552 27 7 2.5761 -7.4350 9.6781 28 7 2.7868 -6.5322 8.7852 29 1 3.6351 -6.0971 8.6059 30 6 1.8097 -3.6598 -0.0099 31 1 -0.4850 -0.8358 -0.0844 32 1 0.3159 -1.2139 1.8876 33 1 -0.5732 -2.5565 1.1261 34 1 -0.0483 -3.1769 3.4279 35 1 1.6704 -2.7821 3.1786 36 1 1.6067 -6.3928 0.2633 37 1 3.3095 -5.9416 0.0026 38 1 3.7816 -6.3647 2.4063 39 1 3.1380 -7.8188 1.6072 40 1 2.0813 -7.3601 3.8504 41 1 0.9072 -7.3867 2.5118 42 1 0.7737 -6.8344 5.6208 43 1 2.5151 -6.4679 5.5839 44 1 2.1358 -4.5198 7.0710 45 1 0.3945 -4.8868 7.1074 46 1 -0.3421 -7.1873 8.4450 47 1 0.9747 -4.1105 -0.5464 48 1 2.6656 -3.5612 -0.6775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021673907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:03 Heat of formation + Delta-G solvation = 58.725652 kcal Electronic energy + Delta-G solvation = -29581.766970 eV Core-core repulsion = 25673.297096 eV Total energy + Delta-G solvation = -3908.469875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.29852 -41.78326 -39.36679 -37.57233 -35.60886 -34.66415 -34.16740 -33.98995 -32.05378 -31.02639 -30.65350 -27.22197 -26.71188 -25.45112 -24.14709 -23.95799 -23.80712 -22.56814 -21.61974 -21.12585 -19.89006 -19.39149 -19.19830 -17.68210 -17.21932 -16.93862 -16.83549 -16.13120 -15.96466 -15.61789 -15.51647 -15.37988 -15.32144 -15.15702 -14.74417 -14.53021 -14.02698 -13.84251 -13.72459 -13.62102 -13.38847 -13.12445 -12.80301 -12.72041 -12.60636 -12.35348 -12.29982 -12.15156 -11.96881 -11.92870 -11.79463 -11.77297 -11.61576 -11.59073 -11.47473 -11.13058 -10.49588 -10.27505 -10.04001 -9.49687 -8.92589 -8.26010 -5.42430 0.54998 1.52817 1.54018 1.62646 1.68726 1.81083 1.82569 2.05544 2.62906 3.19100 3.32587 3.50332 3.63894 3.73887 3.77753 3.83491 3.92522 4.00758 4.09452 4.14433 4.24037 4.27216 4.29942 4.44826 4.48055 4.49707 4.58088 4.60759 4.73485 4.79445 4.82041 4.85862 4.92288 5.00031 5.04736 5.07441 5.10798 5.17867 5.21272 5.22630 5.33761 5.40017 5.53661 5.65930 5.79850 5.96692 6.37086 6.54075 7.04348 7.27323 7.42708 7.75636 8.19897 8.97909 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.002845 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.050310 B = 9838.250971 C =10919.245237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.077 4.077 3 Si 1.113 2.887 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.357 4.357 8 H 0.049 0.951 9 N -0.619 5.619 10 C 0.152 3.848 11 C -0.092 4.092 12 C 0.165 3.835 13 H 0.065 0.935 14 C -0.099 4.099 15 H 0.046 0.954 16 C -0.109 4.109 17 C -0.127 4.127 18 C 0.102 3.898 19 N -0.609 5.609 20 C 0.503 3.497 21 O -0.572 6.572 22 C -0.123 4.123 23 C -0.027 4.027 24 C 0.010 3.990 25 C -0.052 4.052 26 N -0.302 5.302 27 N -0.111 5.111 28 N -0.375 5.375 29 H 0.461 0.539 30 C 0.152 3.848 31 H 0.254 0.746 32 H 0.037 0.963 33 H 0.001 0.999 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.214 0.786 47 H 0.020 0.980 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 -20.161 11.133 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.273 4.273 3 Si 0.937 3.063 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.067 0.933 9 N -0.344 5.344 10 C 0.026 3.974 11 C -0.131 4.131 12 C 0.062 3.938 13 H 0.083 0.917 14 C -0.120 4.120 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.165 4.165 18 C -0.019 4.019 19 N -0.341 5.341 20 C 0.293 3.707 21 O -0.451 6.451 22 C -0.163 4.163 23 C -0.067 4.067 24 C -0.125 4.125 25 C -0.209 4.209 26 N -0.168 5.168 27 N -0.091 5.091 28 N -0.098 5.098 29 H 0.310 0.690 30 C 0.027 3.973 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.143 0.857 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.230 0.770 47 H 0.038 0.962 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.715 -18.869 12.506 23.348 hybrid contribution 0.028 -0.108 -1.396 1.401 sum 5.744 -18.978 11.110 22.728 Atomic orbital electron populations 1.70888 1.07562 1.29418 1.50525 1.27201 0.96648 1.04861 0.98592 0.82889 0.73923 0.72211 0.77244 1.21629 1.21047 1.19724 1.20204 0.96998 0.89884 1.41556 0.93295 1.44396 1.46016 1.02302 1.41658 1.20902 0.89733 0.98066 0.88705 1.22091 1.01359 0.94084 0.95611 1.20918 0.96570 0.89166 0.87172 0.91667 1.21829 0.97083 0.96859 0.96219 0.93538 1.21504 1.02127 0.92553 0.98569 1.21891 0.97827 1.01542 0.95248 1.22091 0.98147 0.80689 1.01017 1.48328 1.67020 1.13707 1.05064 1.21296 0.76062 0.89193 0.84169 1.90810 1.49911 1.20279 1.84141 1.21707 1.06383 0.97962 0.90244 1.19806 1.05554 0.93852 0.87444 1.22316 0.86377 1.03127 1.00652 1.23931 1.02876 0.97465 0.96664 1.75085 0.98918 1.22995 1.19812 1.78254 1.13160 1.06101 1.11545 1.45198 1.12750 1.28070 1.23828 0.69033 1.21052 0.97249 0.84816 0.94202 0.93627 0.94468 0.98134 0.91124 0.93944 0.90931 0.91242 0.92278 0.87525 0.86646 0.89698 0.85723 0.86743 0.89793 0.88075 0.76967 0.96182 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.40 12.43 21.65 0.27 -59.14 16 2 C -0.08 -4.52 4.68 84.86 0.40 -4.13 16 3 Si 1.11 52.67 29.98 68.60 2.06 54.72 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.36 -20.68 9.48 84.03 0.80 -19.88 16 8 H 0.05 2.82 7.94 -2.91 -0.02 2.80 16 9 N -0.62 -32.23 2.86 -699.72 -2.00 -34.24 16 10 C 0.15 7.71 4.65 86.27 0.40 8.12 16 11 C -0.09 -3.83 3.78 30.53 0.12 -3.72 16 12 C 0.17 5.26 2.64 45.01 0.12 5.38 16 13 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 14 C -0.10 -3.16 2.21 -10.74 -0.02 -3.19 16 15 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 16 C -0.11 -2.31 5.24 30.58 0.16 -2.15 16 17 C -0.13 -1.76 6.07 30.68 0.19 -1.57 16 18 C 0.10 1.28 6.33 86.31 0.55 1.82 16 19 N -0.61 -13.70 2.97 -795.34 -2.36 -16.06 16 20 C 0.50 11.41 7.62 87.66 0.67 12.08 16 21 O -0.57 -18.67 11.53 -3.02 -0.03 -18.71 16 22 C -0.12 -1.36 4.10 29.85 0.12 -1.23 16 23 C -0.03 -0.32 5.07 29.85 0.15 -0.17 16 24 C 0.01 0.13 6.56 41.36 0.27 0.40 16 25 C -0.05 -0.77 11.99 83.73 1.00 0.23 16 26 N -0.30 -6.51 12.41 -58.26 -0.72 -7.23 16 27 N -0.11 -2.21 13.38 37.02 0.50 -1.71 16 28 N -0.38 -4.75 6.98 -47.79 -0.33 -5.09 16 29 H 0.46 2.73 8.96 -219.96 -1.97 0.76 16 30 C 0.15 6.29 5.86 86.29 0.51 6.79 16 31 H 0.25 16.29 6.65 -92.71 -0.62 15.68 16 32 H 0.04 2.17 6.34 -2.39 -0.02 2.15 16 33 H 0.00 0.04 7.81 -2.39 -0.02 0.02 16 34 H 0.07 2.95 6.46 -2.38 -0.02 2.93 16 35 H 0.04 1.97 7.14 -2.39 -0.02 1.95 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.12 0.69 6.00 -2.39 -0.01 0.68 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.12 0.82 8.12 -2.39 -0.02 0.80 16 43 H 0.11 0.78 7.47 -2.39 -0.02 0.76 16 44 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 45 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 46 H 0.21 1.95 8.06 -2.91 -0.02 1.92 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 Total: -1.00 -82.02 370.35 1.94 -80.07 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -0.85 Total: 8.59 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.42 Total: -1.21 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -4.66 Total: -123.46 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.03 Total: -18.71 kcal Atomic # 14 Polarization: 52.67 SS G_CDS: 2.06 Total: 54.72 kcal Total: -82.02 1.94 -80.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021673907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.801 kcal (2) G-P(sol) polarization free energy of solvation -82.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds