Wall clock time and date at job start Tue Mar 31 2020 18:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99665 * 2 1 4 4 H 1.48507 * 109.46943 * 240.00228 * 3 2 1 5 5 H 1.48504 * 109.47534 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47378 * 120.00370 * 3 2 1 7 7 C 1.38813 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99768 * 163.01714 * 7 2 1 9 9 N 1.36933 * 119.99827 * 343.01577 * 7 2 1 10 10 C 1.46975 * 120.77269 * 331.84684 * 9 7 2 11 11 C 1.53100 * 108.62075 * 234.31252 * 10 9 7 12 12 C 1.53154 * 109.57681 * 304.65528 * 11 10 9 13 13 H 1.09001 * 110.66222 * 299.02841 * 12 11 10 14 14 C 1.52710 * 109.44713 * 60.38477 * 12 11 10 15 15 H 1.08997 * 109.11631 * 181.42167 * 14 12 11 16 16 C 1.52856 * 109.43268 * 61.92300 * 14 12 11 17 17 C 1.53114 * 109.34667 * 61.90206 * 16 14 12 18 18 C 1.53142 * 109.48106 * 299.35172 * 17 16 14 19 19 N 1.46948 * 109.01997 * 54.07605 * 18 17 16 20 20 C 1.34779 * 120.84506 * 125.94572 * 19 18 17 21 21 O 1.21280 * 120.00028 * 179.97438 * 20 19 18 22 22 C 1.50701 * 120.00278 * 0.02562 * 20 19 18 23 23 C 1.52998 * 109.47087 * 179.97438 * 22 20 19 24 24 C 1.50701 * 109.46982 * 179.97438 * 23 22 20 25 25 C 1.35355 * 126.91025 * 274.95951 * 24 23 22 26 26 N 1.33780 * 106.49393 * 180.02562 * 25 24 23 27 27 N 1.28635 * 108.88446 * 359.97438 * 26 25 24 28 28 N 1.28711 * 110.17857 * 0.02562 * 27 26 25 29 29 H 0.97003 * 125.86657 * 180.02562 * 28 27 26 30 30 C 1.44112 * 121.34953 * 151.65940 * 9 7 2 31 31 H 0.97001 * 119.99798 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.61100 * 114.57127 * 10 9 7 33 33 H 1.09000 * 109.75327 * 354.13679 * 10 9 7 34 34 H 1.09000 * 109.45465 * 184.62196 * 11 10 9 35 35 H 1.09002 * 109.45432 * 64.68719 * 11 10 9 36 36 H 1.08995 * 109.49170 * 301.93909 * 16 14 12 37 37 H 1.08995 * 109.51062 * 181.87316 * 16 14 12 38 38 H 1.08999 * 109.46407 * 179.35188 * 17 16 14 39 39 H 1.08993 * 109.47002 * 59.35814 * 17 16 14 40 40 H 1.08999 * 109.55257 * 294.21285 * 18 17 16 41 41 H 1.09004 * 109.62108 * 173.98305 * 18 17 16 42 42 H 1.08996 * 109.47438 * 59.99344 * 22 20 19 43 43 H 1.09001 * 109.46915 * 299.99685 * 22 20 19 44 44 H 1.09003 * 109.47146 * 59.99765 * 23 22 20 45 45 H 1.08989 * 109.47477 * 299.99557 * 23 22 20 46 46 H 1.07992 * 126.75273 * 0.02562 * 25 24 23 47 47 H 1.08999 * 108.26750 * 6.36038 * 30 9 7 48 48 H 1.09002 * 109.66474 * 246.86203 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0550 -1.2224 -0.2737 9 7 1.3704 -2.3623 0.3454 10 6 0.2266 -2.3438 1.2681 11 6 0.5119 -3.3114 2.4198 12 6 0.8241 -4.7011 1.8571 13 1 -0.0253 -5.0879 1.2941 14 6 2.0542 -4.6201 0.9557 15 1 2.2565 -5.6065 0.5383 16 6 3.2588 -4.1643 1.7789 17 6 3.5430 -5.1946 2.8753 18 6 2.3248 -5.3098 3.7961 19 7 1.1354 -5.5987 2.9829 20 6 0.3525 -6.6610 3.2567 21 8 -0.6258 -6.8849 2.5757 22 6 0.6919 -7.5701 4.4096 23 6 -0.3488 -8.6879 4.5014 24 6 -0.0089 -9.5973 5.6540 25 6 0.8470 -10.6458 5.6372 26 7 0.8393 -11.1621 6.8713 27 7 0.0325 -10.4784 7.6037 28 7 -0.4981 -9.5302 6.9137 29 1 -1.1383 -8.8790 7.2409 30 6 1.7899 -3.6360 -0.1825 31 1 -0.4850 0.8401 0.0004 32 1 -0.6740 -2.6583 0.7406 33 1 0.0872 -1.3371 1.6619 34 1 -0.3616 -3.3705 3.0691 35 1 1.3662 -2.9514 2.9931 36 1 3.0431 -3.1981 2.2348 37 1 4.1299 -4.0740 1.1301 38 1 4.4089 -4.8772 3.4563 39 1 3.7468 -6.1634 2.4194 40 1 2.1816 -4.3709 4.3308 41 1 2.4820 -6.1168 4.5118 42 1 0.6916 -6.9969 5.3367 43 1 1.6791 -8.0044 4.2514 44 1 -0.3488 -9.2613 3.5743 45 1 -1.3357 -8.2533 4.6598 46 1 1.4228 -10.9964 4.7935 47 1 2.7063 -3.4844 -0.7529 48 1 1.0147 -4.0352 -0.8366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021673908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:07 Heat of formation + Delta-G solvation = 71.631585 kcal Electronic energy + Delta-G solvation = -29457.169113 eV Core-core repulsion = 25549.258882 eV Total energy + Delta-G solvation = -3907.910231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.64080 -40.52684 -38.39540 -35.74884 -34.78176 -33.50579 -32.93837 -32.34755 -30.70075 -29.80181 -29.74636 -25.93925 -25.65595 -24.32944 -23.29962 -22.55930 -22.12945 -21.90441 -21.35670 -19.11605 -18.62268 -17.90917 -17.16722 -16.73067 -16.45798 -15.91145 -15.70007 -15.01329 -14.70977 -14.68782 -14.45528 -13.96272 -13.87699 -13.66287 -13.43424 -13.11534 -13.06361 -12.64290 -12.48709 -12.31733 -12.25794 -12.07956 -11.67571 -11.46101 -11.23291 -11.16179 -10.96058 -10.92119 -10.79415 -10.71511 -10.56732 -10.27754 -10.15615 -10.01393 -9.85231 -9.69570 -9.53692 -9.38020 -8.58752 -8.31217 -6.72695 -5.85048 -3.28276 1.18100 2.20652 2.37516 2.63012 3.04259 3.33882 3.40323 3.40611 4.02090 4.28492 4.44718 4.50386 4.57515 4.67016 4.83167 4.88158 5.02028 5.07200 5.10744 5.14118 5.32789 5.32984 5.43504 5.52495 5.57279 5.59644 5.60501 5.66858 5.79234 5.88967 5.96887 6.02915 6.13879 6.26704 6.31505 6.39683 6.45896 6.47883 6.57905 6.76895 6.79146 6.86057 6.91449 7.29045 7.52131 7.62313 7.74310 8.09816 8.20547 8.41236 9.15178 9.81136 10.36461 11.23717 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027763 B = 0.002431 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.304393 B =11514.980569 C =11734.512904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.169 3.831 11 C -0.146 4.146 12 C 0.154 3.846 13 H 0.095 0.905 14 C -0.110 4.110 15 H 0.058 0.942 16 C -0.107 4.107 17 C -0.134 4.134 18 C 0.106 3.894 19 N -0.604 5.604 20 C 0.512 3.488 21 O -0.546 6.546 22 C -0.136 4.136 23 C -0.034 4.034 24 C -0.004 4.004 25 C -0.047 4.047 26 N -0.266 5.266 27 N -0.085 5.085 28 N -0.390 5.390 29 H 0.448 0.552 30 C 0.156 3.844 31 H 0.255 0.745 32 H 0.020 0.980 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.191 0.809 47 H 0.055 0.945 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 -15.093 11.067 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.304 5.304 10 C 0.042 3.958 11 C -0.186 4.186 12 C 0.052 3.948 13 H 0.113 0.887 14 C -0.131 4.131 15 H 0.076 0.924 16 C -0.145 4.145 17 C -0.172 4.172 18 C -0.017 4.017 19 N -0.336 5.336 20 C 0.300 3.700 21 O -0.424 6.424 22 C -0.177 4.177 23 C -0.073 4.073 24 C -0.138 4.138 25 C -0.204 4.204 26 N -0.133 5.133 27 N -0.065 5.065 28 N -0.110 5.110 29 H 0.293 0.707 30 C 0.028 3.972 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.208 0.792 47 H 0.073 0.927 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.273 -15.847 12.043 20.033 hybrid contribution 0.051 1.851 -0.747 1.997 sum 2.324 -13.996 11.295 18.135 Atomic orbital electron populations 1.70020 1.05276 1.25715 1.53479 1.25049 0.95251 0.98447 1.00702 0.86382 0.78923 0.83384 0.78130 1.20859 1.21655 1.21039 1.19085 0.92531 0.84616 1.42093 0.91632 1.43333 1.35684 1.01619 1.49757 1.20781 0.88982 0.98162 0.87858 1.22561 1.00368 0.95069 1.00636 1.21322 0.98151 0.89274 0.86036 0.88727 1.21811 0.94426 0.99510 0.97369 0.92352 1.21468 0.97506 0.98997 0.96512 1.21934 0.96798 1.00397 0.98047 1.21715 0.85115 1.01512 0.93374 1.48571 1.26129 1.26954 1.31919 1.20401 0.83009 0.81146 0.85480 1.90709 1.27678 1.72553 1.51469 1.21691 1.01043 0.96509 0.98440 1.19902 0.99541 0.93940 0.93965 1.22382 1.01159 1.02011 0.88268 1.23467 1.02899 0.96570 0.97476 1.75115 1.13850 1.21772 1.02611 1.78303 1.09165 0.98757 1.20246 1.45167 1.33075 1.24637 1.08165 0.70650 1.20269 0.97986 0.86782 0.92189 0.93500 0.96166 0.89149 0.93348 0.92012 0.90133 0.92243 0.91184 0.92094 0.91133 0.90544 0.89114 0.88299 0.87695 0.89395 0.79156 0.92678 0.96707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 2 C 0.00 0.12 4.93 -17.43 -0.09 0.03 16 3 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.58 9.56 -15.06 -0.14 -6.72 16 8 H 0.07 1.67 7.87 -52.49 -0.41 1.25 16 9 N -0.58 -13.65 2.59 -174.80 -0.45 -14.11 16 10 C 0.17 3.83 5.30 -3.73 -0.02 3.81 16 11 C -0.15 -2.64 5.02 -26.60 -0.13 -2.77 16 12 C 0.15 2.52 2.64 -67.56 -0.18 2.35 16 13 H 0.09 1.78 7.06 -51.93 -0.37 1.42 16 14 C -0.11 -1.78 2.49 -90.96 -0.23 -2.00 16 15 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 16 C -0.11 -1.55 4.86 -26.75 -0.13 -1.68 16 17 C -0.13 -1.44 6.08 -26.60 -0.16 -1.60 16 18 C 0.11 1.09 5.86 -3.72 -0.02 1.07 16 19 N -0.60 -7.85 2.66 -165.14 -0.44 -8.29 16 20 C 0.51 6.38 7.71 -10.98 -0.08 6.29 16 21 O -0.55 -8.85 15.43 5.56 0.09 -8.77 16 22 C -0.14 -1.04 4.04 -27.88 -0.11 -1.15 16 23 C -0.03 -0.24 5.07 -27.88 -0.14 -0.38 16 24 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 25 C -0.05 -0.40 11.99 -17.73 -0.21 -0.61 16 26 N -0.27 -3.04 12.41 30.24 0.38 -2.66 16 27 N -0.08 -0.89 13.38 60.35 0.81 -0.09 16 28 N -0.39 -2.83 6.98 33.54 0.23 -2.59 16 29 H 0.45 1.73 8.96 -190.40 -1.71 0.02 16 30 C 0.16 3.11 5.75 -5.43 -0.03 3.08 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 2.31 6.05 -51.93 -0.31 1.99 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.10 5.33 -51.93 -0.28 0.82 16 36 H 0.08 1.37 6.16 -51.93 -0.32 1.05 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.76 7.27 -51.93 -0.38 0.38 16 41 H 0.08 0.56 5.96 -51.93 -0.31 0.25 16 42 H 0.09 0.57 7.94 -51.93 -0.41 0.16 16 43 H 0.10 0.62 7.71 -51.93 -0.40 0.22 16 44 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 45 H 0.09 0.63 8.10 -51.94 -0.42 0.21 16 46 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.05 1.08 7.85 -51.93 -0.41 0.68 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -32.28 371.11 -9.09 -41.37 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.66 Total: -0.76 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.22 Total: -0.86 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 1.15 Total: -52.46 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.28 -9.09 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021673908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.002 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds