Wall clock time and date at job start Tue Mar 31 2020 18:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99665 * 2 1 4 4 H 1.48507 * 109.46943 * 240.00228 * 3 2 1 5 5 H 1.48504 * 109.47534 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47378 * 120.00370 * 3 2 1 7 7 C 1.38813 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99768 * 163.01714 * 7 2 1 9 9 N 1.36933 * 119.99827 * 343.01577 * 7 2 1 10 10 C 1.46975 * 120.77269 * 331.84684 * 9 7 2 11 11 C 1.53100 * 108.62075 * 234.31252 * 10 9 7 12 12 C 1.53154 * 109.57681 * 304.65528 * 11 10 9 13 13 H 1.09001 * 110.66222 * 299.02841 * 12 11 10 14 14 C 1.52710 * 109.44713 * 60.38477 * 12 11 10 15 15 H 1.08997 * 109.11631 * 181.42167 * 14 12 11 16 16 C 1.52856 * 109.43268 * 61.92300 * 14 12 11 17 17 C 1.53114 * 109.34667 * 61.90206 * 16 14 12 18 18 C 1.53142 * 109.48106 * 299.35172 * 17 16 14 19 19 N 1.46948 * 109.01997 * 54.07605 * 18 17 16 20 20 C 1.34779 * 120.84506 * 125.94572 * 19 18 17 21 21 O 1.21280 * 120.00028 * 179.97438 * 20 19 18 22 22 C 1.50701 * 120.00278 * 0.02562 * 20 19 18 23 23 C 1.52998 * 109.47087 * 179.97438 * 22 20 19 24 24 C 1.50701 * 109.46982 * 179.97438 * 23 22 20 25 25 C 1.35355 * 126.91025 * 274.95951 * 24 23 22 26 26 N 1.33780 * 106.49393 * 180.02562 * 25 24 23 27 27 N 1.28635 * 108.88446 * 359.97438 * 26 25 24 28 28 N 1.28711 * 110.17857 * 0.02562 * 27 26 25 29 29 H 0.97003 * 125.86657 * 180.02562 * 28 27 26 30 30 C 1.44112 * 121.34953 * 151.65940 * 9 7 2 31 31 H 0.97001 * 119.99798 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.61100 * 114.57127 * 10 9 7 33 33 H 1.09000 * 109.75327 * 354.13679 * 10 9 7 34 34 H 1.09000 * 109.45465 * 184.62196 * 11 10 9 35 35 H 1.09002 * 109.45432 * 64.68719 * 11 10 9 36 36 H 1.08995 * 109.49170 * 301.93909 * 16 14 12 37 37 H 1.08995 * 109.51062 * 181.87316 * 16 14 12 38 38 H 1.08999 * 109.46407 * 179.35188 * 17 16 14 39 39 H 1.08993 * 109.47002 * 59.35814 * 17 16 14 40 40 H 1.08999 * 109.55257 * 294.21285 * 18 17 16 41 41 H 1.09004 * 109.62108 * 173.98305 * 18 17 16 42 42 H 1.08996 * 109.47438 * 59.99344 * 22 20 19 43 43 H 1.09001 * 109.46915 * 299.99685 * 22 20 19 44 44 H 1.09003 * 109.47146 * 59.99765 * 23 22 20 45 45 H 1.08989 * 109.47477 * 299.99557 * 23 22 20 46 46 H 1.07992 * 126.75273 * 0.02562 * 25 24 23 47 47 H 1.08999 * 108.26750 * 6.36038 * 30 9 7 48 48 H 1.09002 * 109.66474 * 246.86203 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0550 -1.2224 -0.2737 9 7 1.3704 -2.3623 0.3454 10 6 0.2266 -2.3438 1.2681 11 6 0.5119 -3.3114 2.4198 12 6 0.8241 -4.7011 1.8571 13 1 -0.0253 -5.0879 1.2941 14 6 2.0542 -4.6201 0.9557 15 1 2.2565 -5.6065 0.5383 16 6 3.2588 -4.1643 1.7789 17 6 3.5430 -5.1946 2.8753 18 6 2.3248 -5.3098 3.7961 19 7 1.1354 -5.5987 2.9829 20 6 0.3525 -6.6610 3.2567 21 8 -0.6258 -6.8849 2.5757 22 6 0.6919 -7.5701 4.4096 23 6 -0.3488 -8.6879 4.5014 24 6 -0.0089 -9.5973 5.6540 25 6 0.8470 -10.6458 5.6372 26 7 0.8393 -11.1621 6.8713 27 7 0.0325 -10.4784 7.6037 28 7 -0.4981 -9.5302 6.9137 29 1 -1.1383 -8.8790 7.2409 30 6 1.7899 -3.6360 -0.1825 31 1 -0.4850 0.8401 0.0004 32 1 -0.6740 -2.6583 0.7406 33 1 0.0872 -1.3371 1.6619 34 1 -0.3616 -3.3705 3.0691 35 1 1.3662 -2.9514 2.9931 36 1 3.0431 -3.1981 2.2348 37 1 4.1299 -4.0740 1.1301 38 1 4.4089 -4.8772 3.4563 39 1 3.7468 -6.1634 2.4194 40 1 2.1816 -4.3709 4.3308 41 1 2.4820 -6.1168 4.5118 42 1 0.6916 -6.9969 5.3367 43 1 1.6791 -8.0044 4.2514 44 1 -0.3488 -9.2613 3.5743 45 1 -1.3357 -8.2533 4.6598 46 1 1.4228 -10.9964 4.7935 47 1 2.7063 -3.4844 -0.7529 48 1 1.0147 -4.0352 -0.8366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021673908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:06 Heat of formation + Delta-G solvation = 50.652796 kcal Electronic energy + Delta-G solvation = -29458.078822 eV Core-core repulsion = 25549.258882 eV Total energy + Delta-G solvation = -3908.819940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.27476 -41.66406 -39.64367 -37.18649 -35.48461 -34.47288 -34.10101 -33.70287 -32.13044 -31.22067 -30.72516 -27.41431 -26.73749 -25.52579 -24.00083 -23.80151 -23.58640 -22.86330 -22.45834 -20.24159 -19.37761 -19.23256 -18.51387 -17.97091 -17.27134 -16.99977 -16.64713 -16.53703 -16.10815 -15.64257 -15.37002 -15.17670 -15.08192 -14.97533 -14.51433 -14.30532 -14.25071 -13.92368 -13.76773 -13.52553 -13.16539 -13.01028 -12.98030 -12.73232 -12.57946 -12.40263 -12.29695 -12.22320 -12.02440 -11.84625 -11.78133 -11.72483 -11.57377 -11.41514 -11.33761 -11.02829 -10.71610 -10.53859 -10.12946 -9.49375 -8.68024 -7.87699 -5.33685 0.57258 1.48400 1.49830 1.55082 1.56843 1.69115 1.85316 2.08230 2.51929 3.28255 3.35455 3.65631 3.70754 3.79571 3.86660 3.97305 4.02529 4.03482 4.12189 4.16329 4.29503 4.31739 4.42416 4.48637 4.51954 4.59187 4.64873 4.72733 4.84179 4.90869 4.94459 4.95264 5.02424 5.02660 5.07467 5.11796 5.18877 5.23564 5.28643 5.39552 5.43559 5.63077 5.63974 5.65701 5.74514 5.99173 6.40650 6.56615 7.14238 7.23676 7.44962 7.87474 8.39646 9.19345 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027763 B = 0.002431 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.304393 B =11514.980569 C =11734.512904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.595 5.595 10 C 0.176 3.824 11 C -0.128 4.128 12 C 0.162 3.838 13 H 0.065 0.935 14 C -0.098 4.098 15 H 0.073 0.927 16 C -0.104 4.104 17 C -0.125 4.125 18 C 0.102 3.898 19 N -0.604 5.604 20 C 0.509 3.491 21 O -0.590 6.590 22 C -0.124 4.124 23 C -0.025 4.025 24 C 0.010 3.990 25 C -0.052 4.052 26 N -0.303 5.303 27 N -0.112 5.112 28 N -0.375 5.375 29 H 0.461 0.539 30 C 0.152 3.848 31 H 0.249 0.751 32 H -0.012 1.012 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.214 0.786 47 H 0.055 0.945 48 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 -16.468 12.859 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.387 4.387 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.050 3.950 11 C -0.167 4.167 12 C 0.059 3.941 13 H 0.083 0.917 14 C -0.119 4.119 15 H 0.091 0.909 16 C -0.141 4.141 17 C -0.163 4.163 18 C -0.020 4.020 19 N -0.336 5.336 20 C 0.299 3.701 21 O -0.470 6.470 22 C -0.164 4.164 23 C -0.065 4.065 24 C -0.125 4.125 25 C -0.210 4.210 26 N -0.169 5.169 27 N -0.092 5.092 28 N -0.098 5.098 29 H 0.310 0.690 30 C 0.024 3.976 31 H 0.058 0.942 32 H 0.006 0.994 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.231 0.769 47 H 0.074 0.926 48 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 4.562 -17.253 13.881 22.609 hybrid contribution -0.705 2.261 -1.405 2.754 sum 3.857 -14.992 12.476 19.882 Atomic orbital electron populations 1.70192 1.06800 1.25923 1.55380 1.25810 0.95938 1.01585 1.01239 0.85352 0.77518 0.79198 0.78435 1.20200 1.22437 1.20071 1.19425 0.92830 0.85561 1.40843 0.91178 1.43505 1.35559 1.02288 1.50329 1.20535 0.87891 0.97630 0.88963 1.22271 1.00787 0.95107 0.98574 1.20843 0.97221 0.88815 0.87256 0.91720 1.21623 0.95337 0.98750 0.96184 0.90907 1.21400 0.96245 0.99036 0.97435 1.21897 0.97870 0.99585 0.96963 1.21997 0.83404 1.03172 0.93431 1.48527 1.27369 1.26530 1.31140 1.21254 0.81897 0.80959 0.85987 1.90703 1.29577 1.73525 1.53243 1.21698 1.02245 0.95664 0.96834 1.19810 0.99437 0.93671 0.93618 1.22335 1.00515 1.01572 0.88083 1.23947 1.03179 0.96549 0.97280 1.75090 1.14891 1.22933 1.03965 1.78260 1.10087 0.99870 1.20948 1.45201 1.32571 1.24068 1.08001 0.69015 1.20407 0.97175 0.86285 0.93690 0.94151 0.99401 0.92298 0.92962 0.91140 0.92768 0.92219 0.88736 0.90728 0.91368 0.86295 0.86770 0.85646 0.87892 0.89552 0.76913 0.92605 0.98507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.94 11.19 21.65 0.24 -54.70 16 2 C -0.05 -2.75 4.93 84.86 0.42 -2.33 16 3 Si 0.97 43.68 29.59 68.60 2.03 45.71 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.26 -13.56 9.56 84.03 0.80 -12.76 16 8 H 0.07 3.57 7.87 -2.91 -0.02 3.55 16 9 N -0.59 -28.83 2.59 -706.94 -1.83 -30.66 16 10 C 0.18 8.44 5.30 86.32 0.46 8.89 16 11 C -0.13 -4.66 5.02 30.68 0.15 -4.50 16 12 C 0.16 5.26 2.64 44.79 0.12 5.38 16 13 H 0.06 2.51 7.06 -2.39 -0.02 2.49 16 14 C -0.10 -3.09 2.49 -11.02 -0.03 -3.11 16 15 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.10 -2.77 4.86 30.58 0.15 -2.63 16 17 C -0.13 -2.14 6.08 30.68 0.19 -1.95 16 18 C 0.10 1.62 5.86 86.34 0.51 2.13 16 19 N -0.60 -14.09 2.66 -794.76 -2.12 -16.21 16 20 C 0.51 11.27 7.71 87.66 0.68 11.94 16 21 O -0.59 -18.52 15.43 -3.03 -0.05 -18.57 16 22 C -0.12 -1.33 4.04 29.85 0.12 -1.21 16 23 C -0.03 -0.27 5.07 29.85 0.15 -0.12 16 24 C 0.01 0.12 6.56 41.36 0.27 0.39 16 25 C -0.05 -0.74 11.99 83.73 1.00 0.27 16 26 N -0.30 -6.38 12.41 -58.25 -0.72 -7.10 16 27 N -0.11 -2.18 13.38 37.02 0.50 -1.69 16 28 N -0.38 -4.50 6.98 -47.79 -0.33 -4.84 16 29 H 0.46 2.39 8.96 -219.96 -1.97 0.42 16 30 C 0.15 6.19 5.75 86.75 0.50 6.69 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.06 3.18 6.05 -2.39 -0.01 3.16 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.46 5.33 -2.39 -0.01 2.45 16 36 H 0.05 1.76 6.16 -2.39 -0.01 1.74 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.18 7.27 -2.39 -0.02 1.16 16 41 H 0.12 0.97 5.96 -2.38 -0.01 0.95 16 42 H 0.11 0.79 7.94 -2.39 -0.02 0.77 16 43 H 0.13 0.80 7.71 -2.39 -0.02 0.78 16 44 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16 45 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 46 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 47 H 0.06 2.22 7.85 -2.39 -0.02 2.21 16 48 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: -1.00 -74.63 371.11 2.22 -72.42 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -0.99 Total: 8.55 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 5.49 Total: 7.08 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -4.26 Total: -115.19 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -74.63 2.22 -72.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021673908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.070 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds