Wall clock time and date at job start Tue Mar 31 2020 18:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48493 * 109.47536 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47000 * 300.00783 * 3 2 1 6 6 H 1.48503 * 109.47056 * 60.00526 * 3 2 1 7 7 C 1.38812 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.37540 * 7 2 1 9 9 N 1.36940 * 119.99677 * 359.37419 * 7 2 1 10 10 C 1.46861 * 120.47119 * 144.16768 * 9 7 2 11 11 C 1.53315 * 109.10842 * 127.32172 * 10 9 7 12 12 C 1.52897 * 108.95878 * 54.09313 * 11 10 9 13 13 H 1.09004 * 109.52570 * 58.06177 * 12 11 10 14 14 C 1.53277 * 109.34730 * 298.02512 * 12 11 10 15 15 H 1.09003 * 109.46660 * 303.42799 * 14 12 11 16 16 C 1.52811 * 109.16811 * 183.61572 * 14 12 11 17 17 C 1.53151 * 109.26268 * 61.83117 * 16 14 12 18 18 C 1.53128 * 109.61212 * 299.14843 * 17 16 14 19 19 N 1.46710 * 110.28600 * 178.68263 * 12 11 10 20 20 C 1.34778 * 120.84863 * 354.14092 * 19 12 11 21 21 O 1.21283 * 119.99357 * 354.98252 * 20 19 12 22 22 C 1.50694 * 120.00092 * 174.98135 * 20 19 12 23 23 C 1.53004 * 109.46824 * 180.02562 * 22 20 19 24 24 C 1.50705 * 109.47009 * 179.97438 * 23 22 20 25 25 C 1.35345 * 126.91612 * 274.68400 * 24 23 22 26 26 N 1.33769 * 106.49864 * 179.90355 * 25 24 23 27 27 N 1.28640 * 108.88521 * 0.37264 * 26 25 24 28 28 N 1.28717 * 110.17616 * 359.76308 * 27 26 25 29 29 H 0.96997 * 125.86496 * 179.97438 * 28 27 26 30 30 C 1.47071 * 120.47537 * 324.13593 * 9 7 2 31 31 H 0.96993 * 120.00176 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.53410 * 7.42860 * 10 9 7 33 33 H 1.09006 * 109.52789 * 247.20182 * 10 9 7 34 34 H 1.09002 * 109.55710 * 294.25462 * 11 10 9 35 35 H 1.08997 * 109.56042 * 173.94109 * 11 10 9 36 36 H 1.09003 * 109.50812 * 301.89893 * 16 14 12 37 37 H 1.09007 * 109.50842 * 181.76851 * 16 14 12 38 38 H 1.09003 * 109.44345 * 59.19045 * 17 16 14 39 39 H 1.08995 * 109.44761 * 179.10027 * 17 16 14 40 40 H 1.08994 * 109.54063 * 173.85698 * 18 17 16 41 41 H 1.08999 * 109.54015 * 294.03411 * 18 17 16 42 42 H 1.09004 * 109.46873 * 299.99285 * 22 20 19 43 43 H 1.08998 * 109.47673 * 60.00106 * 22 20 19 44 44 H 1.08996 * 109.47241 * 299.99731 * 23 22 20 45 45 H 1.08994 * 109.47152 * 60.00084 * 23 22 20 46 46 H 1.08002 * 126.75113 * 0.04194 * 25 24 23 47 47 H 1.08997 * 109.69004 * 353.06600 * 30 9 7 48 48 H 1.08998 * 109.68682 * 113.60914 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0107 9 7 1.3256 -2.3880 0.0119 10 6 1.8349 -3.5498 -0.7282 11 6 1.9132 -4.7531 0.2187 12 6 0.5464 -4.9609 0.8718 13 1 -0.2071 -5.1138 0.0992 14 6 0.1864 -3.7231 1.7011 15 1 0.9712 -3.5361 2.4341 16 6 -1.1370 -3.9709 2.4238 17 6 -0.9766 -5.1571 3.3791 18 6 -0.6064 -6.4117 2.5830 19 7 0.5800 -6.1267 1.7619 20 6 1.6701 -6.9166 1.8253 21 8 2.6041 -6.7222 1.0764 22 6 1.7285 -8.0413 2.8266 23 6 3.0636 -8.7762 2.6908 24 6 3.1223 -9.9006 3.6925 25 6 3.5144 -9.8179 4.9853 26 7 3.4057 -11.0500 5.4948 27 7 2.9823 -11.8446 4.5760 28 7 2.7992 -11.1971 3.4788 29 1 2.4841 -11.5739 2.6423 30 6 0.0702 -2.5166 0.7671 31 1 -0.4850 0.8400 0.0004 32 1 2.8284 -3.3271 -1.1173 33 1 1.1617 -3.7794 -1.5542 34 1 2.6605 -4.5632 0.9891 35 1 2.1871 -5.6444 -0.3457 36 1 -1.9144 -4.1945 1.6932 37 1 -1.4142 -3.0820 2.9906 38 1 -0.1884 -4.9388 4.0997 39 1 -1.9145 -5.3265 3.9081 40 1 -0.3861 -7.2281 3.2708 41 1 -1.4388 -6.6930 1.9379 42 1 1.6385 -7.6356 3.8343 43 1 0.9100 -8.7366 2.6403 44 1 3.1542 -9.1818 1.6831 45 1 3.8818 -8.0807 2.8774 46 1 3.8472 -8.9311 5.5042 47 1 -0.1003 -1.6133 1.3527 48 1 -0.7596 -2.6689 0.0768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021673909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:10 Heat of formation + Delta-G solvation = 83.627335 kcal Electronic energy + Delta-G solvation = -29532.517485 eV Core-core repulsion = 25625.127428 eV Total energy + Delta-G solvation = -3907.390057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.62245 -40.56526 -37.91979 -35.86713 -34.79596 -33.50105 -32.88513 -32.64193 -30.56655 -30.03236 -29.02536 -25.90569 -25.57788 -24.20525 -23.28275 -22.57101 -22.40446 -21.75651 -20.27162 -19.40991 -18.88925 -18.52697 -16.77742 -16.69110 -16.38167 -15.91084 -15.69128 -14.86848 -14.73665 -14.56851 -14.34642 -14.05136 -13.94740 -13.61235 -13.42868 -12.98280 -12.79578 -12.63050 -12.45668 -12.24998 -12.05110 -12.02920 -11.64152 -11.50152 -11.14041 -11.00380 -10.95841 -10.90696 -10.90179 -10.79214 -10.70684 -10.22601 -10.04867 -10.01307 -9.83251 -9.52610 -9.48018 -8.81497 -8.46895 -8.29450 -6.50813 -5.78782 -3.31168 1.19736 2.22824 2.38605 2.66169 3.06927 3.35913 3.43653 3.45981 4.03835 4.31243 4.47914 4.52828 4.59407 4.69625 4.82138 4.90113 4.98417 5.08693 5.10789 5.16542 5.33346 5.40968 5.45133 5.54886 5.60508 5.63279 5.65045 5.72093 5.82142 5.88505 5.94226 6.11056 6.24022 6.29998 6.38741 6.43831 6.47417 6.56460 6.65954 6.80010 6.95004 7.02977 7.16861 7.37419 7.58678 7.72149 7.80665 8.11457 8.29175 8.53082 9.25088 9.84341 10.44313 11.28359 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.002617 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.550804 B =10696.914935 C =11216.038905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.595 5.595 10 C 0.139 3.861 11 C -0.120 4.120 12 C 0.157 3.843 13 H 0.063 0.937 14 C -0.121 4.121 15 H 0.065 0.935 16 C -0.112 4.112 17 C -0.133 4.133 18 C 0.107 3.893 19 N -0.606 5.606 20 C 0.512 3.488 21 O -0.530 6.530 22 C -0.139 4.139 23 C -0.033 4.033 24 C -0.004 4.004 25 C -0.046 4.046 26 N -0.266 5.266 27 N -0.086 5.086 28 N -0.390 5.390 29 H 0.447 0.553 30 C 0.182 3.818 31 H 0.253 0.747 32 H 0.055 0.945 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.192 0.808 47 H 0.094 0.906 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -18.515 6.705 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.317 5.317 10 C 0.012 3.988 11 C -0.159 4.159 12 C 0.055 3.945 13 H 0.081 0.919 14 C -0.142 4.142 15 H 0.083 0.917 16 C -0.150 4.150 17 C -0.172 4.172 18 C -0.016 4.016 19 N -0.339 5.339 20 C 0.300 3.700 21 O -0.408 6.408 22 C -0.179 4.179 23 C -0.073 4.073 24 C -0.138 4.138 25 C -0.203 4.203 26 N -0.133 5.133 27 N -0.066 5.066 28 N -0.111 5.111 29 H 0.293 0.707 30 C 0.056 3.944 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.209 0.791 47 H 0.112 0.888 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.070 -19.598 7.130 20.882 hybrid contribution -0.002 1.719 -0.938 1.958 sum -1.072 -17.879 6.193 18.951 Atomic orbital electron populations 1.69916 1.05292 1.25307 1.54551 1.25312 0.95530 0.98311 0.99975 0.86211 0.79424 0.83873 0.77251 1.20207 1.21548 1.21659 1.19214 0.90211 0.83219 1.45412 0.91965 1.44041 1.25302 1.08277 1.54095 1.21149 0.97555 0.87492 0.92603 1.22521 0.94230 0.99168 1.00000 1.21346 0.99335 0.83201 0.90577 0.91896 1.22287 0.96153 0.97019 0.98773 0.91696 1.21480 0.98237 0.97288 0.98002 1.21918 1.01504 0.95368 0.98387 1.21728 0.87976 0.97911 0.93965 1.48343 1.14606 1.28213 1.42689 1.20384 0.82352 0.82950 0.84325 1.90759 1.37022 1.70911 1.42080 1.21747 0.98423 0.97124 1.00655 1.19904 0.98642 0.92492 0.96268 1.22394 1.05788 0.87026 0.98577 1.23480 1.06701 0.97766 0.92401 1.75113 1.14492 1.00980 1.22745 1.78301 1.18090 1.20950 0.89235 1.45157 1.45477 1.07044 1.13442 0.70722 1.20816 0.87454 0.94270 0.91876 0.93648 0.92688 0.96881 0.92001 0.89974 0.92166 0.91514 0.91692 0.91209 0.90423 0.91488 0.88386 0.89358 0.89431 0.87612 0.79125 0.88802 0.96545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.76 10.86 55.49 0.60 -25.16 16 2 C 0.01 0.20 5.23 -17.43 -0.09 0.11 16 3 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.88 9.53 -15.06 -0.14 -7.02 16 8 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 9 N -0.59 -14.87 2.99 -172.28 -0.52 -15.39 16 10 C 0.14 3.01 6.50 -3.68 -0.02 2.99 16 11 C -0.12 -2.25 3.82 -26.62 -0.10 -2.35 16 12 C 0.16 2.61 2.63 -67.73 -0.18 2.43 16 13 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.12 -2.17 2.21 -90.56 -0.20 -2.37 16 15 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 16 C -0.11 -1.59 5.25 -26.75 -0.14 -1.73 16 17 C -0.13 -1.42 6.07 -26.59 -0.16 -1.58 16 18 C 0.11 1.03 6.35 -3.66 -0.02 1.01 16 19 N -0.61 -7.83 2.97 -165.32 -0.49 -8.32 16 20 C 0.51 6.31 7.58 -10.99 -0.08 6.23 16 21 O -0.53 -8.28 11.64 5.56 0.06 -8.21 16 22 C -0.14 -1.06 4.04 -27.88 -0.11 -1.17 16 23 C -0.03 -0.24 5.07 -27.88 -0.14 -0.38 16 24 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 25 C -0.05 -0.41 11.99 -17.74 -0.21 -0.63 16 26 N -0.27 -3.10 12.41 30.23 0.38 -2.72 16 27 N -0.09 -0.91 13.38 60.35 0.81 -0.10 16 28 N -0.39 -2.81 6.98 33.54 0.23 -2.58 16 29 H 0.45 1.63 8.96 -190.40 -1.71 -0.07 16 30 C 0.18 4.19 4.55 -3.72 -0.02 4.17 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 1.20 7.93 -51.93 -0.41 0.78 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 35 H 0.08 1.52 6.13 -51.93 -0.32 1.20 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.54 5.96 -51.93 -0.31 0.23 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.67 7.90 -51.93 -0.41 0.26 16 43 H 0.09 0.52 7.75 -51.93 -0.40 0.12 16 44 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 45 H 0.11 0.84 8.10 -51.93 -0.42 0.42 16 46 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -33.13 371.39 -9.40 -42.53 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.88 Total: -1.34 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.17 Total: -0.86 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 1.01 Total: -54.27 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.06 Total: -8.21 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.13 -9.40 -42.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021673909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.154 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds