Wall clock time and date at job start Tue Mar 31 2020 18:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48493 * 109.47536 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47000 * 300.00783 * 3 2 1 6 6 H 1.48503 * 109.47056 * 60.00526 * 3 2 1 7 7 C 1.38812 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.37540 * 7 2 1 9 9 N 1.36940 * 119.99677 * 359.37419 * 7 2 1 10 10 C 1.46861 * 120.47119 * 144.16768 * 9 7 2 11 11 C 1.53315 * 109.10842 * 127.32172 * 10 9 7 12 12 C 1.52897 * 108.95878 * 54.09313 * 11 10 9 13 13 H 1.09004 * 109.52570 * 58.06177 * 12 11 10 14 14 C 1.53277 * 109.34730 * 298.02512 * 12 11 10 15 15 H 1.09003 * 109.46660 * 303.42799 * 14 12 11 16 16 C 1.52811 * 109.16811 * 183.61572 * 14 12 11 17 17 C 1.53151 * 109.26268 * 61.83117 * 16 14 12 18 18 C 1.53128 * 109.61212 * 299.14843 * 17 16 14 19 19 N 1.46710 * 110.28600 * 178.68263 * 12 11 10 20 20 C 1.34778 * 120.84863 * 354.14092 * 19 12 11 21 21 O 1.21283 * 119.99357 * 354.98252 * 20 19 12 22 22 C 1.50694 * 120.00092 * 174.98135 * 20 19 12 23 23 C 1.53004 * 109.46824 * 180.02562 * 22 20 19 24 24 C 1.50705 * 109.47009 * 179.97438 * 23 22 20 25 25 C 1.35345 * 126.91612 * 274.68400 * 24 23 22 26 26 N 1.33769 * 106.49864 * 179.90355 * 25 24 23 27 27 N 1.28640 * 108.88521 * 0.37264 * 26 25 24 28 28 N 1.28717 * 110.17616 * 359.76308 * 27 26 25 29 29 H 0.96997 * 125.86496 * 179.97438 * 28 27 26 30 30 C 1.47071 * 120.47537 * 324.13593 * 9 7 2 31 31 H 0.96993 * 120.00176 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.53410 * 7.42860 * 10 9 7 33 33 H 1.09006 * 109.52789 * 247.20182 * 10 9 7 34 34 H 1.09002 * 109.55710 * 294.25462 * 11 10 9 35 35 H 1.08997 * 109.56042 * 173.94109 * 11 10 9 36 36 H 1.09003 * 109.50812 * 301.89893 * 16 14 12 37 37 H 1.09007 * 109.50842 * 181.76851 * 16 14 12 38 38 H 1.09003 * 109.44345 * 59.19045 * 17 16 14 39 39 H 1.08995 * 109.44761 * 179.10027 * 17 16 14 40 40 H 1.08994 * 109.54063 * 173.85698 * 18 17 16 41 41 H 1.08999 * 109.54015 * 294.03411 * 18 17 16 42 42 H 1.09004 * 109.46873 * 299.99285 * 22 20 19 43 43 H 1.08998 * 109.47673 * 60.00106 * 22 20 19 44 44 H 1.08996 * 109.47241 * 299.99731 * 23 22 20 45 45 H 1.08994 * 109.47152 * 60.00084 * 23 22 20 46 46 H 1.08002 * 126.75113 * 0.04194 * 25 24 23 47 47 H 1.08997 * 109.69004 * 353.06600 * 30 9 7 48 48 H 1.08998 * 109.68682 * 113.60914 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0107 9 7 1.3256 -2.3880 0.0119 10 6 1.8349 -3.5498 -0.7282 11 6 1.9132 -4.7531 0.2187 12 6 0.5464 -4.9609 0.8718 13 1 -0.2071 -5.1138 0.0992 14 6 0.1864 -3.7231 1.7011 15 1 0.9712 -3.5361 2.4341 16 6 -1.1370 -3.9709 2.4238 17 6 -0.9766 -5.1571 3.3791 18 6 -0.6064 -6.4117 2.5830 19 7 0.5800 -6.1267 1.7619 20 6 1.6701 -6.9166 1.8253 21 8 2.6041 -6.7222 1.0764 22 6 1.7285 -8.0413 2.8266 23 6 3.0636 -8.7762 2.6908 24 6 3.1223 -9.9006 3.6925 25 6 3.5144 -9.8179 4.9853 26 7 3.4057 -11.0500 5.4948 27 7 2.9823 -11.8446 4.5760 28 7 2.7992 -11.1971 3.4788 29 1 2.4841 -11.5739 2.6423 30 6 0.0702 -2.5166 0.7671 31 1 -0.4850 0.8400 0.0004 32 1 2.8284 -3.3271 -1.1173 33 1 1.1617 -3.7794 -1.5542 34 1 2.6605 -4.5632 0.9891 35 1 2.1871 -5.6444 -0.3457 36 1 -1.9144 -4.1945 1.6932 37 1 -1.4142 -3.0820 2.9906 38 1 -0.1884 -4.9388 4.0997 39 1 -1.9145 -5.3265 3.9081 40 1 -0.3861 -7.2281 3.2708 41 1 -1.4388 -6.6930 1.9379 42 1 1.6385 -7.6356 3.8343 43 1 0.9100 -8.7366 2.6403 44 1 3.1542 -9.1818 1.6831 45 1 3.8818 -8.0807 2.8774 46 1 3.8472 -8.9311 5.5042 47 1 -0.1003 -1.6133 1.3527 48 1 -0.7596 -2.6689 0.0768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021673909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:09 Heat of formation + Delta-G solvation = 61.600397 kcal Electronic energy + Delta-G solvation = -29533.472645 eV Core-core repulsion = 25625.127428 eV Total energy + Delta-G solvation = -3908.345216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.27252 -41.68115 -39.20347 -37.30559 -35.56471 -34.47201 -34.08934 -34.05064 -32.03506 -31.10023 -30.41399 -27.37996 -26.71201 -25.40701 -24.04340 -23.88642 -23.77623 -22.52799 -21.50737 -21.05132 -19.84087 -19.18222 -18.70305 -17.66856 -17.19502 -16.89203 -16.80872 -16.57164 -15.71494 -15.51842 -15.39935 -15.30906 -15.12931 -14.96819 -14.75249 -14.21470 -13.95950 -13.80775 -13.66440 -13.55153 -13.14168 -13.07475 -12.80480 -12.73812 -12.66860 -12.53823 -12.29184 -12.10351 -12.03666 -11.99207 -11.77466 -11.67600 -11.57624 -11.56666 -11.44233 -11.01204 -10.57884 -10.23049 -9.96989 -9.44609 -8.52681 -7.87609 -5.44794 0.57504 1.43724 1.45293 1.54627 1.55962 1.72602 1.86860 2.12344 2.47916 3.26441 3.37428 3.65219 3.68303 3.84256 3.89607 3.92333 4.02875 4.05659 4.13381 4.22788 4.33085 4.34526 4.38704 4.50512 4.53431 4.61204 4.67163 4.74984 4.83764 4.89217 4.95039 4.97925 5.04335 5.06349 5.08958 5.16037 5.22177 5.24223 5.36200 5.43201 5.47238 5.56856 5.64300 5.73262 5.82127 6.00937 6.43725 6.61260 7.16840 7.31991 7.44843 7.83958 8.38110 9.15999 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.002617 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.550804 B =10696.914935 C =11216.038905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.267 4.267 8 H 0.056 0.944 9 N -0.614 5.614 10 C 0.135 3.865 11 C -0.098 4.098 12 C 0.165 3.835 13 H 0.060 0.940 14 C -0.107 4.107 15 H 0.043 0.957 16 C -0.110 4.110 17 C -0.126 4.126 18 C 0.104 3.896 19 N -0.608 5.608 20 C 0.507 3.493 21 O -0.569 6.569 22 C -0.126 4.126 23 C -0.025 4.025 24 C 0.012 3.988 25 C -0.055 4.055 26 N -0.303 5.303 27 N -0.111 5.111 28 N -0.373 5.373 29 H 0.462 0.538 30 C 0.191 3.809 31 H 0.252 0.748 32 H 0.046 0.954 33 H 0.012 0.988 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.210 0.790 47 H 0.058 0.942 48 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -20.478 7.871 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.398 4.398 8 H 0.074 0.926 9 N -0.338 5.338 10 C 0.009 3.991 11 C -0.137 4.137 12 C 0.062 3.938 13 H 0.078 0.922 14 C -0.128 4.128 15 H 0.061 0.939 16 C -0.148 4.148 17 C -0.164 4.164 18 C -0.018 4.018 19 N -0.340 5.340 20 C 0.297 3.703 21 O -0.449 6.449 22 C -0.166 4.166 23 C -0.065 4.065 24 C -0.123 4.123 25 C -0.213 4.213 26 N -0.169 5.169 27 N -0.091 5.091 28 N -0.097 5.097 29 H 0.311 0.689 30 C 0.065 3.935 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.227 0.773 47 H 0.077 0.923 48 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -1.753 -21.624 8.311 23.233 hybrid contribution 0.221 2.349 -1.374 2.730 sum -1.532 -19.275 6.937 20.543 Atomic orbital electron populations 1.70088 1.06487 1.25789 1.55316 1.26027 0.96388 1.01365 1.00035 0.85202 0.78483 0.79743 0.77018 1.19443 1.21506 1.21319 1.19448 0.90287 0.84615 1.45430 0.92620 1.44313 1.25650 1.08584 1.55250 1.21265 0.96762 0.87840 0.93218 1.22256 0.95166 0.97529 0.98776 1.20926 0.97512 0.84455 0.90913 0.92216 1.21982 0.97873 0.95514 0.97402 0.93859 1.21459 0.95733 0.99050 0.98568 1.21887 1.03169 0.93854 0.97489 1.22040 0.86984 0.98421 0.94309 1.48348 1.16285 1.26890 1.42517 1.21198 0.81214 0.83445 0.84460 1.90733 1.38221 1.72098 1.43838 1.21717 0.99570 0.95651 0.99666 1.19809 0.98335 0.92047 0.96283 1.22327 1.05009 0.87004 0.97991 1.23910 1.06569 0.97670 0.93114 1.75088 1.15799 1.02189 1.23844 1.78250 1.19258 1.21465 0.90093 1.45173 1.44220 1.06854 1.13428 0.68900 1.20593 0.86110 0.95185 0.91645 0.93912 0.93563 0.97052 0.94105 0.89257 0.91723 0.92544 0.91994 0.87976 0.86434 0.90052 0.86543 0.86368 0.88999 0.88375 0.77336 0.92339 0.98581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 10.86 21.65 0.24 -54.58 16 2 C -0.04 -2.40 5.23 84.86 0.44 -1.95 16 3 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.27 -15.23 9.53 84.03 0.80 -14.43 16 8 H 0.06 3.17 7.83 -2.91 -0.02 3.15 16 9 N -0.61 -32.11 2.99 -698.98 -2.09 -34.20 16 10 C 0.14 6.09 6.50 86.42 0.56 6.65 16 11 C -0.10 -3.73 3.82 30.67 0.12 -3.62 16 12 C 0.17 5.40 2.63 45.01 0.12 5.52 16 13 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.11 -3.87 2.21 -10.76 -0.02 -3.90 16 15 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 16 C -0.11 -3.00 5.25 30.58 0.16 -2.84 16 17 C -0.13 -2.21 6.07 30.69 0.19 -2.03 16 18 C 0.10 1.52 6.35 86.31 0.55 2.06 16 19 N -0.61 -14.05 2.97 -795.33 -2.36 -16.41 16 20 C 0.51 11.04 7.58 87.66 0.66 11.71 16 21 O -0.57 -16.94 11.64 -3.04 -0.04 -16.98 16 22 C -0.13 -1.36 4.04 29.85 0.12 -1.24 16 23 C -0.02 -0.27 5.07 29.85 0.15 -0.12 16 24 C 0.01 0.14 6.56 41.36 0.27 0.41 16 25 C -0.05 -0.85 11.99 83.73 1.00 0.16 16 26 N -0.30 -6.58 12.41 -58.26 -0.72 -7.30 16 27 N -0.11 -2.16 13.38 37.02 0.50 -1.67 16 28 N -0.37 -4.36 6.98 -47.79 -0.33 -4.70 16 29 H 0.46 1.99 8.96 -219.96 -1.97 0.01 16 30 C 0.19 9.18 4.55 86.28 0.39 9.58 16 31 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 33 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.04 1.71 7.44 -2.39 -0.02 1.70 16 35 H 0.09 3.30 6.13 -2.39 -0.01 3.28 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 0.86 5.96 -2.39 -0.01 0.85 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 0.95 7.90 -2.38 -0.02 0.93 16 43 H 0.12 0.67 7.75 -2.39 -0.02 0.65 16 44 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 45 H 0.10 1.31 8.10 -2.39 -0.02 1.29 16 46 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 47 H 0.06 3.21 6.14 -2.39 -0.01 3.20 16 48 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: -1.00 -76.54 371.39 1.73 -74.81 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -1.00 Total: 7.69 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.52 Total: 5.96 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -4.78 Total: -118.86 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.04 Total: -16.98 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -76.54 1.73 -74.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021673909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.410 kcal (2) G-P(sol) polarization free energy of solvation -76.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds