Wall clock time and date at job start Tue Mar 31 2020 17:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47392 * 90.00282 * 3 2 1 5 5 H 1.48504 * 109.46871 * 209.99882 * 3 2 1 6 6 H 1.48497 * 109.47254 * 329.99637 * 3 2 1 7 7 C 1.38819 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99947 * 18.95997 * 7 2 1 9 9 N 1.36937 * 119.99646 * 198.96064 * 7 2 1 10 10 C 1.46927 * 120.62765 * 208.49635 * 9 7 2 11 11 C 1.52757 * 109.00981 * 233.58852 * 10 9 7 12 12 C 1.53045 * 109.38382 * 305.58717 * 11 10 9 13 13 C 1.53039 * 109.53270 * 61.24270 * 12 11 10 14 14 H 1.08998 * 109.50064 * 58.58490 * 13 12 11 15 15 C 1.53004 * 109.52196 * 178.66667 * 13 12 11 16 16 N 1.46497 * 109.47363 * 184.85262 * 15 13 12 17 17 C 1.34775 * 120.00495 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00402 * 180.02562 * 17 16 15 20 20 H 1.09009 * 109.68981 * 299.45355 * 19 17 16 21 21 C 1.53437 * 109.69198 * 178.87018 * 19 17 16 22 22 C 1.53115 * 109.54642 * 190.57064 * 21 19 17 23 23 C 1.53427 * 109.57731 * 70.06780 * 22 21 19 24 24 C 1.50594 * 108.33455 * 310.18377 * 23 22 21 25 25 N 1.32911 * 129.16036 * 196.61042 * 24 23 22 26 26 N 1.29020 * 108.63381 * 179.77305 * 25 24 23 27 27 N 1.29105 * 110.26077 * 0.02562 * 26 25 24 28 28 H 0.97001 * 126.00854 * 180.02562 * 27 26 25 29 29 C 1.34397 * 107.98529 * 0.06904 * 27 26 25 30 30 C 1.46918 * 120.63373 * 28.78627 * 9 7 2 31 31 H 0.97004 * 119.99847 * 175.21133 * 1 2 3 32 32 H 1.08999 * 109.58546 * 353.42594 * 10 9 7 33 33 H 1.09000 * 109.58269 * 113.84436 * 10 9 7 34 34 H 1.09004 * 109.56356 * 185.55835 * 11 10 9 35 35 H 1.08995 * 109.38836 * 65.51857 * 11 10 9 36 36 H 1.08992 * 109.45876 * 301.22390 * 12 11 10 37 37 H 1.08994 * 109.44801 * 181.25193 * 12 11 10 38 38 H 1.09001 * 109.47238 * 304.85314 * 15 13 12 39 39 H 1.09001 * 109.47145 * 64.85209 * 15 13 12 40 40 H 0.97000 * 119.99906 * 0.02562 * 16 15 13 41 41 H 1.09000 * 109.45863 * 310.59388 * 21 19 17 42 42 H 1.08997 * 109.46144 * 70.55127 * 21 19 17 43 43 H 1.09002 * 109.45971 * 310.03089 * 22 21 19 44 44 H 1.09005 * 109.43237 * 190.08508 * 22 21 19 45 45 H 1.09000 * 109.68937 * 190.47129 * 23 22 21 46 46 H 1.09003 * 109.68936 * 69.89542 * 23 22 21 47 47 H 1.09005 * 109.58303 * 246.15388 * 30 9 7 48 48 H 1.09001 * 109.58818 * 6.42868 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5477 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.5142 -2.1123 -0.3030 9 7 3.3239 -1.2341 0.3859 10 6 4.2378 -2.2500 -0.1540 11 6 4.9130 -2.9789 1.0063 12 6 5.5825 -1.9566 1.9277 13 6 4.5229 -1.0119 2.4995 14 1 3.7773 -1.5895 3.0458 15 6 5.1879 -0.0109 3.4464 16 7 4.1601 0.8175 4.0816 17 6 4.5148 1.7748 4.9615 18 8 5.6850 1.9503 5.2277 19 6 3.4574 2.6265 5.6153 20 1 2.9046 3.1754 4.8528 21 6 4.1168 3.6133 6.5879 22 6 3.0395 4.2902 7.4396 23 6 2.4417 3.2707 8.4180 24 6 2.0628 2.0363 7.6431 25 7 1.2603 1.0373 7.9957 26 7 1.2122 0.1857 7.0277 27 7 1.9524 0.5816 6.0468 28 1 2.0819 0.1158 5.2059 29 6 2.5130 1.7521 6.3961 30 6 3.8446 -0.2573 1.3518 31 1 -0.4850 -0.8372 -0.0701 32 1 3.6758 -2.9647 -0.7552 33 1 4.9968 -1.7680 -0.7703 34 1 5.6649 -3.6658 0.6178 35 1 4.1642 -3.5384 1.5669 36 1 6.3141 -1.3811 1.3606 37 1 6.0835 -2.4770 2.7439 38 1 5.7447 -0.5502 4.2127 39 1 5.8697 0.6254 2.8820 40 1 3.2241 0.6765 3.8696 41 1 4.8084 3.0761 7.2369 42 1 4.6620 4.3698 6.0236 43 1 2.2527 4.6755 6.7910 44 1 3.4838 5.1132 7.9995 45 1 1.5558 3.6928 8.8925 46 1 3.1797 3.0150 9.1784 47 1 4.5709 0.3906 0.8608 48 1 3.0236 0.3443 1.7420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023556027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:36 Heat of formation + Delta-G solvation = 60.163725 kcal Electronic energy + Delta-G solvation = -30087.199119 eV Core-core repulsion = 26178.791604 eV Total energy + Delta-G solvation = -3908.407515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.68546 -40.15686 -38.36767 -36.99249 -35.13642 -34.11099 -33.26471 -31.47544 -30.80156 -30.42999 -30.30825 -26.32592 -25.15174 -24.61550 -23.32582 -22.86894 -22.38034 -21.09868 -20.91553 -19.79114 -19.51615 -18.40375 -17.54337 -17.32237 -16.45005 -16.04375 -15.79428 -15.42609 -14.93613 -14.58888 -14.19613 -14.14867 -14.01239 -13.89431 -13.66671 -13.58219 -13.43025 -12.93706 -12.62957 -12.41455 -12.20437 -11.99760 -11.78904 -11.60210 -11.54388 -11.44584 -11.30671 -10.93032 -10.87757 -10.76332 -10.54762 -10.49948 -10.22818 -10.04399 -9.94664 -9.74374 -9.27828 -9.24024 -9.06619 -8.67985 -7.20253 -6.38894 -3.47934 1.32024 2.24730 2.36639 2.53222 2.95714 3.14941 3.38871 3.53078 4.00103 4.11510 4.34816 4.39348 4.46559 4.61389 4.67817 4.92171 4.98339 5.01379 5.04350 5.07965 5.13657 5.15803 5.32351 5.33459 5.46573 5.59717 5.61728 5.65676 5.66777 5.74980 5.78341 5.85783 5.94089 5.96437 6.01150 6.03915 6.13188 6.18852 6.25047 6.38688 6.40745 6.52225 6.57430 6.58912 6.82305 7.19846 7.87892 7.91896 8.28044 8.29473 8.92148 9.44756 10.05653 10.99853 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.003997 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.241381 B = 7003.754488 C = 7566.380012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.018 4.018 3 Si 1.067 2.933 4 H -0.298 1.298 5 H -0.285 1.285 6 H -0.298 1.298 7 C -0.344 4.344 8 H 0.067 0.933 9 N -0.604 5.604 10 C 0.144 3.856 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.122 4.122 14 H 0.076 0.924 15 C 0.124 3.876 16 N -0.730 5.730 17 C 0.518 3.482 18 O -0.525 6.525 19 C -0.036 4.036 20 H 0.123 0.877 21 C -0.095 4.095 22 C -0.121 4.121 23 C -0.034 4.034 24 C -0.005 4.005 25 N -0.259 5.259 26 N -0.075 5.075 27 N -0.377 5.377 28 H 0.447 0.553 29 C -0.013 4.013 30 C 0.131 3.869 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.394 0.606 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.029 0.971 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.676 5.696 12.137 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.899 3.101 4 H -0.227 1.227 5 H -0.211 1.211 6 H -0.226 1.226 7 C -0.472 4.472 8 H 0.085 0.915 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.174 4.174 12 C -0.138 4.138 13 C -0.142 4.142 14 H 0.095 0.905 15 C 0.000 4.000 16 N -0.383 5.383 17 C 0.302 3.698 18 O -0.401 6.401 19 C -0.059 4.059 20 H 0.140 0.860 21 C -0.134 4.134 22 C -0.159 4.159 23 C -0.074 4.074 24 C -0.146 4.146 25 N -0.125 5.125 26 N -0.054 5.054 27 N -0.098 5.098 28 H 0.294 0.706 29 C -0.149 4.149 30 C 0.005 3.995 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.229 0.771 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.047 0.953 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.312 6.350 12.973 17.185 hybrid contribution 0.379 -1.513 -1.383 2.084 sum 9.690 4.837 11.591 15.863 Atomic orbital electron populations 1.70891 1.05963 1.30087 1.49036 1.26194 0.96683 1.01049 0.98047 0.83766 0.74827 0.75870 0.75636 1.22711 1.21084 1.22601 1.20283 0.85715 0.95197 1.46052 0.91521 1.44310 1.07749 1.34271 1.46462 1.20884 0.92513 0.91520 0.93247 1.21920 0.99325 0.97570 0.98566 1.21326 0.96869 0.96939 0.98651 1.22023 0.98418 0.96720 0.97084 0.90521 1.21557 0.90171 0.92665 0.95594 1.46281 1.10969 1.36392 1.44658 1.20360 0.89967 0.80356 0.79088 1.90710 1.18803 1.68372 1.62178 1.20114 0.93068 0.94609 0.98150 0.85953 1.21464 0.97667 0.97181 0.97058 1.21695 0.98427 0.97789 0.97944 1.20019 1.01482 0.89164 0.96691 1.21708 1.00018 0.99187 0.93640 1.74856 1.16984 1.00990 1.19641 1.78633 1.13319 1.20912 0.92550 1.44908 1.31506 1.16296 1.17049 0.70615 1.21440 1.03845 0.91129 0.98492 1.21429 0.96703 0.92068 0.89305 0.92550 0.92306 0.96067 0.92519 0.92186 0.92112 0.92719 0.91322 0.90977 0.77064 0.89961 0.89618 0.90993 0.89893 0.89435 0.89655 0.95332 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.17 13.70 55.49 0.76 -26.41 16 2 C -0.02 -0.50 5.25 -17.43 -0.09 -0.59 16 3 Si 1.07 24.90 24.69 -169.99 -4.20 20.70 16 4 H -0.30 -6.19 6.52 56.52 0.37 -5.82 16 5 H -0.28 -6.48 6.74 56.52 0.38 -6.10 16 6 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.34 -9.12 9.90 -15.06 -0.15 -9.27 16 8 H 0.07 1.91 8.06 -52.48 -0.42 1.49 16 9 N -0.60 -13.44 2.76 -172.59 -0.48 -13.92 16 10 C 0.14 2.71 6.49 -3.93 -0.03 2.69 16 11 C -0.13 -2.04 6.06 -26.83 -0.16 -2.20 16 12 C -0.10 -1.38 5.17 -26.69 -0.14 -1.52 16 13 C -0.12 -1.84 2.37 -90.50 -0.21 -2.06 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.12 1.66 5.07 -4.04 -0.02 1.64 16 16 N -0.73 -9.59 4.90 -60.29 -0.30 -9.89 16 17 C 0.52 6.82 7.15 -10.99 -0.08 6.74 16 18 O -0.53 -8.22 15.84 5.55 0.09 -8.13 16 19 C -0.04 -0.39 2.91 -92.78 -0.27 -0.66 16 20 H 0.12 1.16 8.14 -51.92 -0.42 0.73 16 21 C -0.10 -0.85 4.66 -26.45 -0.12 -0.97 16 22 C -0.12 -0.85 5.90 -26.45 -0.16 -1.00 16 23 C -0.03 -0.30 6.30 -27.71 -0.17 -0.47 16 24 C -0.01 -0.07 7.11 -83.12 -0.59 -0.66 16 25 N -0.26 -3.92 12.40 33.16 0.41 -3.51 16 26 N -0.08 -1.16 13.40 60.35 0.81 -0.35 16 27 N -0.38 -4.96 6.76 33.39 0.23 -4.73 16 28 H 0.45 5.25 6.82 -190.07 -1.30 3.96 16 29 C -0.01 -0.16 6.38 -82.50 -0.53 -0.69 16 30 C 0.13 2.53 3.29 -3.72 -0.01 2.51 16 31 H 0.26 7.80 8.73 -40.82 -0.36 7.44 16 32 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.39 5.04 5.74 -40.82 -0.23 4.80 16 41 H 0.08 0.82 7.75 -51.93 -0.40 0.42 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.03 0.56 7.10 -51.93 -0.37 0.19 16 48 H 0.07 1.39 3.68 -51.93 -0.19 1.20 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -32.55 368.57 -8.30 -40.85 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.45 Total: 6.32 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.73 Total: -6.50 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 1.43 Total: -58.80 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -4.20 Total: 20.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.55 -8.30 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023556027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.015 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds