Wall clock time and date at job start Tue Mar 31 2020 17:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47392 * 90.00282 * 3 2 1 5 5 H 1.48504 * 109.46871 * 209.99882 * 3 2 1 6 6 H 1.48497 * 109.47254 * 329.99637 * 3 2 1 7 7 C 1.38819 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99947 * 18.95997 * 7 2 1 9 9 N 1.36937 * 119.99646 * 198.96064 * 7 2 1 10 10 C 1.46927 * 120.62765 * 208.49635 * 9 7 2 11 11 C 1.52757 * 109.00981 * 233.58852 * 10 9 7 12 12 C 1.53045 * 109.38382 * 305.58717 * 11 10 9 13 13 C 1.53039 * 109.53270 * 61.24270 * 12 11 10 14 14 H 1.08998 * 109.50064 * 58.58490 * 13 12 11 15 15 C 1.53004 * 109.52196 * 178.66667 * 13 12 11 16 16 N 1.46497 * 109.47363 * 184.85262 * 15 13 12 17 17 C 1.34775 * 120.00495 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00402 * 180.02562 * 17 16 15 20 20 H 1.09009 * 109.68981 * 299.45355 * 19 17 16 21 21 C 1.53437 * 109.69198 * 178.87018 * 19 17 16 22 22 C 1.53115 * 109.54642 * 190.57064 * 21 19 17 23 23 C 1.53427 * 109.57731 * 70.06780 * 22 21 19 24 24 C 1.50594 * 108.33455 * 310.18377 * 23 22 21 25 25 N 1.32911 * 129.16036 * 196.61042 * 24 23 22 26 26 N 1.29020 * 108.63381 * 179.77305 * 25 24 23 27 27 N 1.29105 * 110.26077 * 0.02562 * 26 25 24 28 28 H 0.97001 * 126.00854 * 180.02562 * 27 26 25 29 29 C 1.34397 * 107.98529 * 0.06904 * 27 26 25 30 30 C 1.46918 * 120.63373 * 28.78627 * 9 7 2 31 31 H 0.97004 * 119.99847 * 175.21133 * 1 2 3 32 32 H 1.08999 * 109.58546 * 353.42594 * 10 9 7 33 33 H 1.09000 * 109.58269 * 113.84436 * 10 9 7 34 34 H 1.09004 * 109.56356 * 185.55835 * 11 10 9 35 35 H 1.08995 * 109.38836 * 65.51857 * 11 10 9 36 36 H 1.08992 * 109.45876 * 301.22390 * 12 11 10 37 37 H 1.08994 * 109.44801 * 181.25193 * 12 11 10 38 38 H 1.09001 * 109.47238 * 304.85314 * 15 13 12 39 39 H 1.09001 * 109.47145 * 64.85209 * 15 13 12 40 40 H 0.97000 * 119.99906 * 0.02562 * 16 15 13 41 41 H 1.09000 * 109.45863 * 310.59388 * 21 19 17 42 42 H 1.08997 * 109.46144 * 70.55127 * 21 19 17 43 43 H 1.09002 * 109.45971 * 310.03089 * 22 21 19 44 44 H 1.09005 * 109.43237 * 190.08508 * 22 21 19 45 45 H 1.09000 * 109.68937 * 190.47129 * 23 22 21 46 46 H 1.09003 * 109.68936 * 69.89542 * 23 22 21 47 47 H 1.09005 * 109.58303 * 246.15388 * 30 9 7 48 48 H 1.09001 * 109.58818 * 6.42868 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5477 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.5142 -2.1123 -0.3030 9 7 3.3239 -1.2341 0.3859 10 6 4.2378 -2.2500 -0.1540 11 6 4.9130 -2.9789 1.0063 12 6 5.5825 -1.9566 1.9277 13 6 4.5229 -1.0119 2.4995 14 1 3.7773 -1.5895 3.0458 15 6 5.1879 -0.0109 3.4464 16 7 4.1601 0.8175 4.0816 17 6 4.5148 1.7748 4.9615 18 8 5.6850 1.9503 5.2277 19 6 3.4574 2.6265 5.6153 20 1 2.9046 3.1754 4.8528 21 6 4.1168 3.6133 6.5879 22 6 3.0395 4.2902 7.4396 23 6 2.4417 3.2707 8.4180 24 6 2.0628 2.0363 7.6431 25 7 1.2603 1.0373 7.9957 26 7 1.2122 0.1857 7.0277 27 7 1.9524 0.5816 6.0468 28 1 2.0819 0.1158 5.2059 29 6 2.5130 1.7521 6.3961 30 6 3.8446 -0.2573 1.3518 31 1 -0.4850 -0.8372 -0.0701 32 1 3.6758 -2.9647 -0.7552 33 1 4.9968 -1.7680 -0.7703 34 1 5.6649 -3.6658 0.6178 35 1 4.1642 -3.5384 1.5669 36 1 6.3141 -1.3811 1.3606 37 1 6.0835 -2.4770 2.7439 38 1 5.7447 -0.5502 4.2127 39 1 5.8697 0.6254 2.8820 40 1 3.2241 0.6765 3.8696 41 1 4.8084 3.0761 7.2369 42 1 4.6620 4.3698 6.0236 43 1 2.2527 4.6755 6.7910 44 1 3.4838 5.1132 7.9995 45 1 1.5558 3.6928 8.8925 46 1 3.1797 3.0150 9.1784 47 1 4.5709 0.3906 0.8608 48 1 3.0236 0.3443 1.7420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023556027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:35 Heat of formation + Delta-G solvation = 36.983927 kcal Electronic energy + Delta-G solvation = -30088.204271 eV Core-core repulsion = 26178.791604 eV Total energy + Delta-G solvation = -3909.412666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.68322 -41.20572 -39.72088 -37.81802 -36.38511 -35.26655 -34.81871 -32.90565 -32.28668 -31.41415 -31.20039 -27.47689 -26.88496 -25.54236 -24.38172 -24.01423 -23.58542 -22.36039 -22.06898 -20.96581 -20.56766 -19.47465 -19.37292 -18.29862 -17.46376 -17.15791 -16.97176 -16.73162 -16.28776 -15.68372 -15.48422 -15.28696 -15.09265 -14.93241 -14.82288 -14.80111 -14.64714 -14.30008 -13.90311 -13.66397 -13.53075 -13.18925 -12.98303 -12.73445 -12.50153 -12.40711 -12.27269 -12.14178 -12.04510 -11.81941 -11.72662 -11.66384 -11.58111 -11.41354 -11.35353 -11.24261 -11.02339 -10.61361 -10.31074 -10.02279 -9.13485 -8.51024 -5.57993 0.32554 1.24373 1.29533 1.37831 1.51309 1.56303 1.68202 1.97729 2.45554 3.04841 3.12107 3.24629 3.31092 3.49307 3.68416 3.77337 3.86067 3.88046 3.91034 4.13653 4.23072 4.25070 4.30416 4.37761 4.42754 4.44650 4.56592 4.57891 4.68059 4.72481 4.80639 4.91560 4.97169 4.98246 5.02194 5.08502 5.10969 5.17002 5.17997 5.23895 5.26856 5.31292 5.45433 5.51355 5.62080 5.74891 6.16867 6.22051 6.89174 6.89881 7.25007 7.52836 8.05137 8.82555 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.003997 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.241381 B = 7003.754488 C = 7566.380012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.069 4.069 3 Si 1.103 2.897 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.311 1.311 7 C -0.331 4.331 8 H 0.028 0.972 9 N -0.621 5.621 10 C 0.136 3.864 11 C -0.126 4.126 12 C -0.098 4.098 13 C -0.110 4.110 14 H 0.069 0.931 15 C 0.130 3.870 16 N -0.732 5.732 17 C 0.519 3.481 18 O -0.549 6.549 19 C -0.033 4.033 20 H 0.141 0.859 21 C -0.093 4.093 22 C -0.112 4.112 23 C -0.036 4.036 24 C -0.010 4.010 25 N -0.285 5.285 26 N -0.110 5.110 27 N -0.375 5.375 28 H 0.450 0.550 29 C -0.011 4.011 30 C 0.126 3.874 31 H 0.247 0.753 32 H 0.041 0.959 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.396 0.604 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.035 0.965 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.542 7.453 13.448 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.263 4.263 3 Si 0.929 3.071 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.240 1.240 7 C -0.461 4.461 8 H 0.046 0.954 9 N -0.346 5.346 10 C 0.011 3.989 11 C -0.164 4.164 12 C -0.136 4.136 13 C -0.130 4.130 14 H 0.087 0.913 15 C 0.007 3.993 16 N -0.385 5.385 17 C 0.305 3.695 18 O -0.426 6.426 19 C -0.056 4.056 20 H 0.158 0.842 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.075 4.075 24 C -0.151 4.151 25 N -0.150 5.150 26 N -0.089 5.089 27 N -0.096 5.096 28 H 0.297 0.703 29 C -0.147 4.147 30 C 0.001 3.999 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.129 0.871 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.053 0.947 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.208 8.060 14.313 20.466 hybrid contribution -0.480 -2.181 -1.859 2.905 sum 11.728 5.880 12.454 18.089 Atomic orbital electron populations 1.71010 1.07280 1.29064 1.52464 1.27360 0.96500 1.04420 0.98062 0.83303 0.73793 0.72047 0.77939 1.18271 1.19941 1.24026 1.20140 0.87759 0.93694 1.44469 0.95402 1.44423 1.06688 1.35650 1.47820 1.21060 0.92114 0.90805 0.94871 1.21814 0.99514 0.97923 0.97188 1.21358 0.96434 0.96468 0.99301 1.21836 0.98600 0.96863 0.95715 0.91304 1.21471 0.90020 0.92342 0.95474 1.46350 1.11014 1.36439 1.44672 1.20707 0.90084 0.80122 0.78626 1.90701 1.19913 1.69063 1.62955 1.20284 0.92248 0.94295 0.98780 0.84176 1.21513 0.97970 0.96865 0.96796 1.21696 0.97973 0.97704 0.97586 1.20247 1.02305 0.87939 0.97025 1.22408 0.98988 0.99635 0.94025 1.74817 1.18176 1.01955 1.20081 1.78593 1.14908 1.21929 0.93422 1.44946 1.31156 1.16671 1.16839 0.70266 1.21775 1.03598 0.90737 0.98635 1.21502 0.96534 0.91836 0.89990 0.94356 0.94047 0.94913 0.89512 0.93504 0.90980 0.89887 0.90149 0.90712 0.76927 0.91092 0.88397 0.90464 0.87128 0.88390 0.88667 0.94694 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.47 13.70 21.65 0.30 -58.18 16 2 C -0.07 -3.84 5.25 84.86 0.45 -3.39 16 3 Si 1.10 49.62 24.69 68.60 1.69 51.31 16 4 H -0.26 -9.71 6.52 99.48 0.65 -9.07 16 5 H -0.27 -11.72 6.74 99.48 0.67 -11.05 16 6 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 7 C -0.33 -18.05 9.90 84.04 0.83 -17.22 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 9 N -0.62 -27.35 2.76 -699.94 -1.93 -29.29 16 10 C 0.14 5.00 6.49 86.22 0.56 5.55 16 11 C -0.13 -3.50 6.06 30.53 0.19 -3.31 16 12 C -0.10 -2.35 5.17 30.62 0.16 -2.19 16 13 C -0.11 -3.04 2.37 -10.72 -0.03 -3.06 16 14 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 15 C 0.13 3.11 5.07 86.38 0.44 3.55 16 16 N -0.73 -17.48 4.90 -463.06 -2.27 -19.75 16 17 C 0.52 12.36 7.15 87.66 0.63 12.99 16 18 O -0.55 -15.79 15.84 -3.05 -0.05 -15.83 16 19 C -0.03 -0.62 2.91 -12.19 -0.04 -0.65 16 20 H 0.14 2.19 8.14 -2.38 -0.02 2.17 16 21 C -0.09 -1.36 4.66 30.78 0.14 -1.22 16 22 C -0.11 -1.17 5.90 30.78 0.18 -0.99 16 23 C -0.04 -0.53 6.30 29.96 0.19 -0.34 16 24 C -0.01 -0.23 7.11 41.75 0.30 0.07 16 25 N -0.29 -8.56 12.40 -48.99 -0.61 -9.17 16 26 N -0.11 -3.42 13.40 37.02 0.50 -2.92 16 27 N -0.38 -9.69 6.76 -48.27 -0.33 -10.01 16 28 H 0.45 10.45 6.82 -219.68 -1.50 8.95 16 29 C -0.01 -0.25 6.38 41.50 0.26 0.01 16 30 C 0.13 4.62 3.29 86.36 0.28 4.90 16 31 H 0.25 15.42 8.73 -92.71 -0.81 14.61 16 32 H 0.04 1.61 7.93 -2.39 -0.02 1.59 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.40 9.37 5.74 -92.71 -0.53 8.84 16 41 H 0.07 1.23 7.75 -2.39 -0.02 1.21 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 44 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.04 1.26 7.10 -2.38 -0.02 1.24 16 48 H 0.05 2.14 3.68 -2.39 -0.01 2.13 16 Total: -1.00 -73.27 368.57 0.67 -72.59 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -1.17 Total: 26.54 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 4.54 Total: -5.30 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -4.34 Total: -129.32 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.05 Total: -15.83 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 1.69 Total: 51.31 kcal Total: -73.27 0.67 -72.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023556027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.577 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds