Wall clock time and date at job start Tue Mar 31 2020 17:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00178 * 2 1 4 4 H 1.48496 * 109.47171 * 272.95685 * 3 2 1 5 5 H 1.48498 * 109.46899 * 32.95602 * 3 2 1 6 6 H 1.48501 * 109.46927 * 152.94862 * 3 2 1 7 7 C 1.38817 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00039 * 339.34016 * 7 2 1 9 9 N 1.36941 * 119.99704 * 159.34769 * 7 2 1 10 10 C 1.46927 * 120.63138 * 332.62135 * 9 7 2 11 11 C 1.53183 * 108.77419 * 233.61186 * 10 9 7 12 12 C 1.53045 * 109.31400 * 305.36329 * 11 10 9 13 13 C 1.53041 * 109.53533 * 61.36912 * 12 11 10 14 14 H 1.09002 * 109.50008 * 58.61667 * 13 12 11 15 15 C 1.53001 * 109.49640 * 178.68102 * 13 12 11 16 16 N 1.46504 * 109.47040 * 184.93417 * 15 13 12 17 17 C 1.34773 * 120.00180 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99704 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00218 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.72633 * 59.42827 * 19 17 16 21 21 C 1.53441 * 109.69555 * 179.97438 * 19 17 16 22 22 C 1.53106 * 109.54996 * 169.42167 * 21 19 17 23 23 C 1.53420 * 109.57743 * 289.92418 * 22 21 19 24 24 C 1.50601 * 108.32907 * 49.83385 * 23 22 21 25 25 N 1.32911 * 129.16163 * 163.38719 * 24 23 22 26 26 N 1.29019 * 108.63289 * 180.20883 * 25 24 23 27 27 N 1.29110 * 110.26248 * 359.97329 * 26 25 24 28 28 H 0.97001 * 126.00958 * 179.97438 * 27 26 25 29 29 C 1.34401 * 107.98364 * 359.93660 * 27 26 25 30 30 C 1.46935 * 120.60216 * 152.64471 * 9 7 2 31 31 H 0.97002 * 119.99774 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.58186 * 113.82141 * 10 9 7 33 33 H 1.09002 * 109.70331 * 353.47398 * 10 9 7 34 34 H 1.09008 * 109.49780 * 185.41495 * 11 10 9 35 35 H 1.08997 * 109.49939 * 65.31828 * 11 10 9 36 36 H 1.08992 * 109.46253 * 301.34836 * 12 11 10 37 37 H 1.09003 * 109.44567 * 181.37734 * 12 11 10 38 38 H 1.08998 * 109.46800 * 64.93856 * 15 13 12 39 39 H 1.08989 * 109.47185 * 304.93280 * 15 13 12 40 40 H 0.97007 * 119.99882 * 359.97438 * 16 15 13 41 41 H 1.08993 * 109.45790 * 289.45310 * 21 19 17 42 42 H 1.09001 * 109.45328 * 49.39751 * 21 19 17 43 43 H 1.08997 * 109.45276 * 49.97633 * 22 21 19 44 44 H 1.09011 * 109.44729 * 169.89939 * 22 21 19 45 45 H 1.08992 * 109.71009 * 290.11163 * 23 22 21 46 46 H 1.09004 * 109.71059 * 169.54433 * 23 22 21 47 47 H 1.09004 * 109.61555 * 6.62189 * 30 9 7 48 48 H 1.08995 * 109.56228 * 246.19141 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4352 2.0825 -1.3982 5 1 1.4804 2.6338 0.7616 6 1 3.5776 1.4229 0.6367 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3290 9 7 3.3137 -1.2401 -0.4188 10 6 3.8174 -0.2584 -1.3891 11 6 4.4617 -1.0078 -2.5594 12 6 5.5284 -1.9647 -2.0219 13 6 4.8747 -2.9903 -1.0930 14 1 4.1082 -3.5398 -1.6397 15 6 5.9364 -3.9664 -0.5822 16 7 5.2929 -5.0164 0.2113 17 6 6.0373 -5.9932 0.7666 18 8 7.2398 -6.0030 0.6089 19 6 5.3754 -7.0736 1.5823 20 1 4.6498 -7.6063 0.9676 21 6 6.4359 -8.0556 2.0974 22 6 5.8072 -8.9919 3.1329 23 6 5.4911 -8.2058 4.4119 24 6 4.7349 -6.9613 4.0282 25 7 4.0090 -6.1512 4.7919 26 7 3.5323 -5.2062 4.0540 27 7 3.9148 -5.3584 2.8303 28 1 3.6886 -4.7791 2.0859 29 6 4.6821 -6.4602 2.7693 30 6 4.2344 -2.2639 0.0941 31 1 -0.4850 0.8401 -0.0004 32 1 4.5600 0.3801 -0.9106 33 1 2.9924 0.3523 -1.7559 34 1 4.9243 -0.2922 -3.2392 35 1 3.6989 -1.5756 -3.0921 36 1 6.2778 -1.3991 -1.4683 37 1 6.0054 -2.4813 -2.8549 38 1 6.6541 -3.4302 0.0386 39 1 6.4536 -4.4166 -1.4293 40 1 4.3312 -5.0083 0.3377 41 1 6.8224 -8.6426 1.2643 42 1 7.2519 -7.4995 2.5588 43 1 4.8869 -9.4141 2.7291 44 1 6.5044 -9.7972 3.3647 45 1 6.4190 -7.9318 4.9137 46 1 4.8802 -8.8162 5.0771 47 1 3.6832 -2.9784 0.7055 48 1 5.0108 -1.7890 0.6938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023556028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:39 Heat of formation + Delta-G solvation = 65.286794 kcal Electronic energy + Delta-G solvation = -29756.383492 eV Core-core repulsion = 25848.198129 eV Total energy + Delta-G solvation = -3908.185362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.69347 -40.23040 -38.37616 -37.04604 -35.25960 -34.15045 -33.11944 -31.35788 -30.97788 -30.45717 -30.33817 -26.45900 -25.43870 -24.65128 -23.32836 -22.85358 -22.20130 -21.57544 -21.02247 -19.86188 -19.55591 -18.39638 -17.46380 -16.81278 -16.49662 -16.03110 -15.84727 -15.48142 -15.16777 -14.60589 -14.25378 -14.15059 -14.03776 -13.93045 -13.75289 -13.56268 -13.33646 -12.79657 -12.69619 -12.47750 -12.26608 -11.83354 -11.79358 -11.61590 -11.60403 -11.57549 -11.36396 -10.94527 -10.92993 -10.74481 -10.70096 -10.55771 -10.32028 -10.17898 -9.99159 -9.77876 -9.54509 -9.33245 -9.09345 -8.71870 -7.10923 -6.05449 -3.42906 1.30519 2.19127 2.36233 2.50773 2.86177 3.24785 3.42808 3.44647 3.96555 4.04324 4.28779 4.39342 4.43870 4.55819 4.64515 4.83382 4.90482 4.97832 4.98915 5.04575 5.09501 5.11370 5.29150 5.30550 5.47417 5.53951 5.59182 5.60896 5.62249 5.69272 5.74832 5.83396 5.92395 5.93856 5.96050 6.00143 6.07413 6.20180 6.20579 6.34612 6.41152 6.51998 6.58988 6.60691 6.82606 7.11089 7.82110 7.83949 8.19898 8.29266 8.80427 9.60256 9.96728 11.10063 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.003470 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.667454 B = 8066.359526 C = 9546.332234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.268 4.268 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.123 3.877 11 C -0.134 4.134 12 C -0.100 4.100 13 C -0.123 4.123 14 H 0.080 0.920 15 C 0.125 3.875 16 N -0.730 5.730 17 C 0.516 3.484 18 O -0.524 6.524 19 C -0.031 4.031 20 H 0.120 0.880 21 C -0.097 4.097 22 C -0.119 4.119 23 C -0.035 4.035 24 C -0.005 4.005 25 N -0.260 5.260 26 N -0.067 5.067 27 N -0.376 5.376 28 H 0.447 0.553 29 C -0.020 4.020 30 C 0.158 3.842 31 H 0.264 0.736 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.394 0.606 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.048 0.952 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.985 -16.986 0.132 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.396 4.396 8 H 0.102 0.898 9 N -0.327 5.327 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.138 4.138 13 C -0.143 4.143 14 H 0.098 0.902 15 C 0.002 3.998 16 N -0.382 5.382 17 C 0.300 3.700 18 O -0.399 6.399 19 C -0.055 4.055 20 H 0.137 0.863 21 C -0.135 4.135 22 C -0.157 4.157 23 C -0.074 4.074 24 C -0.145 4.145 25 N -0.126 5.126 26 N -0.046 5.046 27 N -0.097 5.097 28 H 0.294 0.706 29 C -0.156 4.156 30 C 0.032 3.968 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.228 0.772 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.868 -16.051 1.156 20.605 hybrid contribution 0.146 1.036 -1.286 1.658 sum 13.014 -15.015 -0.130 19.871 Atomic orbital electron populations 1.69828 1.05760 1.26753 1.52310 1.25259 0.95194 0.97658 0.99065 0.86950 0.80042 0.84585 0.77007 1.21572 1.23046 1.19598 1.18848 0.84861 0.94775 1.41152 0.89823 1.44290 1.08484 1.33187 1.46746 1.21365 0.97362 0.91998 0.89474 1.21995 0.98011 0.98578 0.98751 1.21333 0.97799 0.96689 0.97979 1.22004 0.97025 0.96001 0.99278 0.90173 1.21542 0.95731 0.87704 0.94848 1.46255 1.10745 1.27523 1.53724 1.20393 0.87637 0.82308 0.79628 1.90723 1.13962 1.75216 1.60045 1.20051 0.98356 0.95204 0.91869 0.86282 1.21471 0.96457 0.96012 0.99566 1.21679 1.01648 0.97892 0.94515 1.20020 0.98962 0.90344 0.98122 1.21718 1.02797 1.00622 0.89365 1.74896 1.10544 1.01123 1.26004 1.78724 1.19610 1.19110 0.87153 1.44957 1.33620 1.19959 1.11120 0.70590 1.21416 1.02535 0.92847 0.98816 1.20887 0.92357 0.91235 0.92358 0.92617 0.95700 0.90873 0.92537 0.91646 0.92235 0.92607 0.91189 0.91209 0.77159 0.89744 0.89904 0.91118 0.89949 0.89625 0.89448 0.93371 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.97 55.49 0.78 -26.22 16 2 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 3 Si 0.88 21.94 24.35 -169.99 -4.14 17.80 16 4 H -0.29 -6.87 6.62 56.52 0.37 -6.50 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.65 6.63 56.52 0.37 -6.27 16 7 C -0.27 -7.09 10.03 -15.06 -0.15 -7.25 16 8 H 0.08 2.33 8.05 -52.49 -0.42 1.90 16 9 N -0.60 -13.28 2.77 -172.31 -0.48 -13.76 16 10 C 0.12 2.54 4.20 -3.71 -0.02 2.52 16 11 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 12 C -0.10 -1.36 5.17 -26.69 -0.14 -1.49 16 13 C -0.12 -1.67 2.37 -90.50 -0.21 -1.88 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 15 C 0.13 1.47 5.07 -4.04 -0.02 1.45 16 16 N -0.73 -7.72 4.89 -60.30 -0.29 -8.02 16 17 C 0.52 5.77 7.13 -10.99 -0.08 5.69 16 18 O -0.52 -7.51 15.83 5.56 0.09 -7.42 16 19 C -0.03 -0.27 2.90 -92.78 -0.27 -0.54 16 20 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.10 -0.72 4.67 -26.45 -0.12 -0.85 16 22 C -0.12 -0.69 5.90 -26.46 -0.16 -0.85 16 23 C -0.04 -0.28 6.30 -27.71 -0.17 -0.45 16 24 C 0.00 -0.06 7.11 -83.12 -0.59 -0.65 16 25 N -0.26 -3.89 12.40 33.17 0.41 -3.48 16 26 N -0.07 -1.04 13.40 60.35 0.81 -0.23 16 27 N -0.38 -4.68 6.77 33.39 0.23 -4.45 16 28 H 0.45 4.95 6.41 -190.07 -1.22 3.73 16 29 C -0.02 -0.22 6.38 -82.49 -0.53 -0.75 16 30 C 0.16 2.73 5.60 -3.71 -0.02 2.71 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.03 0.51 7.08 -51.93 -0.37 0.15 16 33 H 0.07 1.67 4.49 -51.93 -0.23 1.44 16 34 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.79 8.14 -51.94 -0.42 0.37 16 40 H 0.39 3.69 5.86 -40.82 -0.24 3.45 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.75 7.73 -51.93 -0.40 0.35 16 43 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 44 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.78 6.64 -51.93 -0.34 0.43 16 48 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -33.59 367.43 -8.13 -41.72 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.33 Total: 2.48 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.73 Total: -3.97 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 1.45 Total: -56.15 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.59 -8.13 -41.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023556028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.005 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds