Wall clock time and date at job start Tue Mar 31 2020 17:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00178 * 2 1 4 4 H 1.48496 * 109.47171 * 272.95685 * 3 2 1 5 5 H 1.48498 * 109.46899 * 32.95602 * 3 2 1 6 6 H 1.48501 * 109.46927 * 152.94862 * 3 2 1 7 7 C 1.38817 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00039 * 339.34016 * 7 2 1 9 9 N 1.36941 * 119.99704 * 159.34769 * 7 2 1 10 10 C 1.46927 * 120.63138 * 332.62135 * 9 7 2 11 11 C 1.53183 * 108.77419 * 233.61186 * 10 9 7 12 12 C 1.53045 * 109.31400 * 305.36329 * 11 10 9 13 13 C 1.53041 * 109.53533 * 61.36912 * 12 11 10 14 14 H 1.09002 * 109.50008 * 58.61667 * 13 12 11 15 15 C 1.53001 * 109.49640 * 178.68102 * 13 12 11 16 16 N 1.46504 * 109.47040 * 184.93417 * 15 13 12 17 17 C 1.34773 * 120.00180 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99704 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00218 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.72633 * 59.42827 * 19 17 16 21 21 C 1.53441 * 109.69555 * 179.97438 * 19 17 16 22 22 C 1.53106 * 109.54996 * 169.42167 * 21 19 17 23 23 C 1.53420 * 109.57743 * 289.92418 * 22 21 19 24 24 C 1.50601 * 108.32907 * 49.83385 * 23 22 21 25 25 N 1.32911 * 129.16163 * 163.38719 * 24 23 22 26 26 N 1.29019 * 108.63289 * 180.20883 * 25 24 23 27 27 N 1.29110 * 110.26248 * 359.97329 * 26 25 24 28 28 H 0.97001 * 126.00958 * 179.97438 * 27 26 25 29 29 C 1.34401 * 107.98364 * 359.93660 * 27 26 25 30 30 C 1.46935 * 120.60216 * 152.64471 * 9 7 2 31 31 H 0.97002 * 119.99774 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.58186 * 113.82141 * 10 9 7 33 33 H 1.09002 * 109.70331 * 353.47398 * 10 9 7 34 34 H 1.09008 * 109.49780 * 185.41495 * 11 10 9 35 35 H 1.08997 * 109.49939 * 65.31828 * 11 10 9 36 36 H 1.08992 * 109.46253 * 301.34836 * 12 11 10 37 37 H 1.09003 * 109.44567 * 181.37734 * 12 11 10 38 38 H 1.08998 * 109.46800 * 64.93856 * 15 13 12 39 39 H 1.08989 * 109.47185 * 304.93280 * 15 13 12 40 40 H 0.97007 * 119.99882 * 359.97438 * 16 15 13 41 41 H 1.08993 * 109.45790 * 289.45310 * 21 19 17 42 42 H 1.09001 * 109.45328 * 49.39751 * 21 19 17 43 43 H 1.08997 * 109.45276 * 49.97633 * 22 21 19 44 44 H 1.09011 * 109.44729 * 169.89939 * 22 21 19 45 45 H 1.08992 * 109.71009 * 290.11163 * 23 22 21 46 46 H 1.09004 * 109.71059 * 169.54433 * 23 22 21 47 47 H 1.09004 * 109.61555 * 6.62189 * 30 9 7 48 48 H 1.08995 * 109.56228 * 246.19141 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4352 2.0825 -1.3982 5 1 1.4804 2.6338 0.7616 6 1 3.5776 1.4229 0.6367 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3290 9 7 3.3137 -1.2401 -0.4188 10 6 3.8174 -0.2584 -1.3891 11 6 4.4617 -1.0078 -2.5594 12 6 5.5284 -1.9647 -2.0219 13 6 4.8747 -2.9903 -1.0930 14 1 4.1082 -3.5398 -1.6397 15 6 5.9364 -3.9664 -0.5822 16 7 5.2929 -5.0164 0.2113 17 6 6.0373 -5.9932 0.7666 18 8 7.2398 -6.0030 0.6089 19 6 5.3754 -7.0736 1.5823 20 1 4.6498 -7.6063 0.9676 21 6 6.4359 -8.0556 2.0974 22 6 5.8072 -8.9919 3.1329 23 6 5.4911 -8.2058 4.4119 24 6 4.7349 -6.9613 4.0282 25 7 4.0090 -6.1512 4.7919 26 7 3.5323 -5.2062 4.0540 27 7 3.9148 -5.3584 2.8303 28 1 3.6886 -4.7791 2.0859 29 6 4.6821 -6.4602 2.7693 30 6 4.2344 -2.2639 0.0941 31 1 -0.4850 0.8401 -0.0004 32 1 4.5600 0.3801 -0.9106 33 1 2.9924 0.3523 -1.7559 34 1 4.9243 -0.2922 -3.2392 35 1 3.6989 -1.5756 -3.0921 36 1 6.2778 -1.3991 -1.4683 37 1 6.0054 -2.4813 -2.8549 38 1 6.6541 -3.4302 0.0386 39 1 6.4536 -4.4166 -1.4293 40 1 4.3312 -5.0083 0.3377 41 1 6.8224 -8.6426 1.2643 42 1 7.2519 -7.4995 2.5588 43 1 4.8869 -9.4141 2.7291 44 1 6.5044 -9.7972 3.3647 45 1 6.4190 -7.9318 4.9137 46 1 4.8802 -8.8162 5.0771 47 1 3.6832 -2.9784 0.7055 48 1 5.0108 -1.7890 0.6938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023556028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:38 Heat of formation + Delta-G solvation = 40.919162 kcal Electronic energy + Delta-G solvation = -29757.440151 eV Core-core repulsion = 25848.198129 eV Total energy + Delta-G solvation = -3909.242022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.65461 -41.16234 -39.69491 -37.80162 -36.44501 -35.22187 -34.62574 -32.89311 -32.37444 -31.37122 -31.17680 -27.66808 -27.07159 -25.51836 -24.31639 -23.77083 -23.65223 -22.86524 -21.97805 -20.91324 -20.53020 -19.31775 -18.82307 -18.20423 -17.46088 -17.28324 -16.99382 -16.81014 -16.26757 -15.67060 -15.45812 -15.20974 -15.04125 -14.94065 -14.84623 -14.74289 -14.54687 -14.20636 -14.05119 -13.65130 -13.34816 -13.24955 -13.14898 -12.68534 -12.60669 -12.45485 -12.26408 -12.22579 -12.16066 -12.02339 -11.76165 -11.66145 -11.63482 -11.41818 -11.38778 -11.31334 -11.00560 -10.69958 -10.26450 -9.99916 -8.97186 -8.20466 -5.51752 0.36143 1.25173 1.27517 1.38082 1.41794 1.45269 1.61222 2.00344 2.37448 3.01514 3.14772 3.25035 3.29707 3.52404 3.71637 3.79566 3.89397 3.91162 3.94233 4.15936 4.21255 4.28063 4.32914 4.34717 4.45574 4.47224 4.56053 4.59817 4.72175 4.76056 4.78800 4.89503 4.98705 5.00207 5.05504 5.06215 5.13061 5.19412 5.20891 5.24887 5.29294 5.33224 5.47360 5.52967 5.66681 5.81978 6.08619 6.24377 6.87589 6.96376 7.29121 7.58304 7.98881 8.99019 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.003470 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.667454 B = 8066.359526 C = 9546.332234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.031 4.031 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.315 1.315 6 H -0.266 1.266 7 C -0.248 4.248 8 H 0.059 0.941 9 N -0.618 5.618 10 C 0.114 3.886 11 C -0.126 4.126 12 C -0.098 4.098 13 C -0.107 4.107 14 H 0.080 0.920 15 C 0.135 3.865 16 N -0.727 5.727 17 C 0.517 3.483 18 O -0.554 6.554 19 C -0.025 4.025 20 H 0.152 0.848 21 C -0.095 4.095 22 C -0.110 4.110 23 C -0.038 4.038 24 C -0.013 4.013 25 N -0.289 5.289 26 N -0.115 5.115 27 N -0.373 5.373 28 H 0.449 0.551 29 C -0.010 4.010 30 C 0.151 3.849 31 H 0.261 0.739 32 H 0.027 0.973 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.400 0.600 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.051 0.949 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.644 -18.993 -1.323 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.226 4.226 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.244 1.244 6 H -0.191 1.191 7 C -0.378 4.378 8 H 0.077 0.923 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.165 4.165 12 C -0.136 4.136 13 C -0.127 4.127 14 H 0.098 0.902 15 C 0.011 3.989 16 N -0.380 5.380 17 C 0.303 3.697 18 O -0.432 6.432 19 C -0.049 4.049 20 H 0.170 0.830 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.077 4.077 24 C -0.154 4.154 25 N -0.154 5.154 26 N -0.093 5.093 27 N -0.094 5.094 28 H 0.297 0.703 29 C -0.146 4.146 30 C 0.026 3.974 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.235 0.765 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.070 0.930 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 15.559 -18.060 -0.306 23.840 hybrid contribution -0.624 1.563 -0.834 1.878 sum 14.935 -16.497 -1.140 22.282 Atomic orbital electron populations 1.69948 1.07302 1.27119 1.55633 1.25839 0.95719 1.00689 1.00394 0.86003 0.78582 0.80851 0.77442 1.20056 1.24413 1.19113 1.18878 0.86663 0.93606 1.38607 0.92312 1.44431 1.07682 1.34473 1.47611 1.21443 0.96667 0.92145 0.90813 1.21899 0.98427 0.99136 0.97078 1.21358 0.97021 0.96247 0.98957 1.21790 0.97322 0.96064 0.97536 0.90199 1.21382 0.94787 0.87478 0.95255 1.46248 1.11099 1.27207 1.53405 1.20752 0.87233 0.82447 0.79273 1.90716 1.15266 1.75937 1.61255 1.20256 0.99098 0.94609 0.90905 0.83035 1.21518 0.95510 0.95863 1.00477 1.21676 1.02699 0.97647 0.92723 1.20248 0.98721 0.89040 0.99665 1.22442 1.02276 1.01378 0.89307 1.74841 1.11625 1.01864 1.27041 1.78681 1.21767 1.20460 0.88377 1.44969 1.33504 1.20389 1.10552 0.70279 1.21844 1.01360 0.91878 0.99561 1.21108 0.91660 0.90457 0.94137 0.93023 0.95463 0.93545 0.90062 0.92402 0.91713 0.89378 0.91918 0.89784 0.76453 0.88120 0.91715 0.89967 0.87400 0.89164 0.88498 0.93012 0.95730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.03 13.97 21.65 0.30 -58.73 16 2 C -0.03 -1.79 5.23 84.86 0.44 -1.34 16 3 Si 0.94 46.28 24.35 68.60 1.67 47.95 16 4 H -0.27 -12.66 6.62 99.48 0.66 -12.00 16 5 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 6 H -0.27 -12.68 6.63 99.48 0.66 -12.02 16 7 C -0.25 -13.37 10.03 84.03 0.84 -12.53 16 8 H 0.06 3.40 8.05 -2.91 -0.02 3.37 16 9 N -0.62 -26.88 2.77 -699.08 -1.94 -28.82 16 10 C 0.11 4.53 4.20 86.36 0.36 4.90 16 11 C -0.13 -3.72 6.08 30.67 0.19 -3.53 16 12 C -0.10 -2.30 5.17 30.62 0.16 -2.14 16 13 C -0.11 -2.63 2.37 -10.72 -0.03 -2.66 16 14 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 15 C 0.13 2.78 5.07 86.38 0.44 3.22 16 16 N -0.73 -13.77 4.89 -463.08 -2.27 -16.03 16 17 C 0.52 10.35 7.13 87.66 0.63 10.98 16 18 O -0.55 -14.65 15.83 -3.04 -0.05 -14.70 16 19 C -0.03 -0.37 2.90 -12.19 -0.04 -0.41 16 20 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 21 C -0.10 -1.13 4.67 30.78 0.14 -0.99 16 22 C -0.11 -0.89 5.90 30.77 0.18 -0.71 16 23 C -0.04 -0.52 6.30 29.96 0.19 -0.33 16 24 C -0.01 -0.29 7.11 41.75 0.30 0.00 16 25 N -0.29 -8.77 12.40 -48.98 -0.61 -9.38 16 26 N -0.11 -3.66 13.40 37.02 0.50 -3.16 16 27 N -0.37 -9.26 6.77 -48.27 -0.33 -9.59 16 28 H 0.45 9.95 6.41 -219.68 -1.41 8.55 16 29 C -0.01 -0.20 6.38 41.50 0.26 0.06 16 30 C 0.15 5.06 5.60 86.36 0.48 5.54 16 31 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.03 1.07 7.08 -2.39 -0.02 1.06 16 33 H 0.05 2.09 4.49 -2.39 -0.01 2.08 16 34 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.40 6.75 5.86 -92.70 -0.54 6.21 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.04 7.73 -2.39 -0.02 1.02 16 43 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 44 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.05 1.65 6.64 -2.38 -0.02 1.63 16 48 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.86 367.43 0.79 -75.07 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -1.05 Total: 17.31 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.56 Total: 0.07 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -4.34 Total: -125.70 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.05 Total: -14.70 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.67 Total: 47.95 kcal Total: -75.86 0.79 -75.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023556028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.992 kcal (2) G-P(sol) polarization free energy of solvation -75.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds